Flood‐deposited wood creates regeneration niches for riparian vegetation on a semi‐arid South African river

Question : The formation of large woody debris (LWD) piles during floods has significant impacts on riparian succession through pioneering plants often establishing in association with wood. We assess the importance of LWD for seed regeneration of riparian plants after a century‐scale flood disturbance in a semi‐arid environment. Location : The Sabie River within Kruger National Park in the semi‐arid northeast of South Africa. Methods : Our approach was to quantify the riparian soil seed bank, to record the frequency of establishment of riparian plants in woody debris piles, and to conduct experimental out‐plantings of common riparian trees in plots with and without LWD. Results : We found the abundance and diversity of seedlings were higher in soils taken from wood piles than from open reference areas, and most seedlings were herbaceous species. Surveys indicated that numbers of seedlings recorded within woody debris were significantly greater than in open reference areas or within established vegetation. Seedling establishment in various cover‐types also varied for different riparian tree species. Experimental out‐planting of seedlings of two riparian tree species (Philenoptera violacea and Combretum erythrophyllum) revealed that, after 433 days, planted seedlings survived only in woody debris piles. Conclusion : LWD formed after a large flood creates heterogeneous patches that may influence post‐disturbance regeneration of riparian vegetation by providing a variety of environmental niches for seedlings establishment. We suspect that higher seedling survival in LWD is due to increased moisture (particularly in the dry season) and nutrients, and protection from seasonal flooding and herbivory.     

Assessing soil seed bank persistence in flood‐meadows: The search for reliable traits

Abstract. To assess seed bank persistence of target species in endangered flood‐meadows (alliances Cnidion and Molinion), we investigated established vegetation and soil seed bank of 46 plots for 3 yr and 2 yr, respectively. As traits of seed persistence we calculated various continuous indices that refer to the frequency and abundance of species in above‐ground vegetation and at different soil depths. Furthermore, we tested the significance and soundness of easily observed traits such as maximum seed density per plot and seed attributes (mass, size and shape) as predictors of soil seed bank features. In linear regression, SAI, the seed accumulation index, showed the best agreement (R²= 0.64) with the seed longevity index that was derived from the database by Thompson et al. (1997) for a set of 115 species. The second best predictor (R²= 0.39) of the seed longevity index was maximum seed density per plot in the lower soil layer (5–10 cm). Depth distribution indices and seed attributes showed weaker but still significant relations. The dynamic character of flood‐meadows was reflected by a large proportion of species with a strong tendency to accumulate seeds in the soil relative to their importance in above‐ground vegetation. Most of these species have a ruderal strategy, exploiting gaps after flood disturbances, while the dominants of flood‐meadows tended to have short‐lived seed banks. Compared to other grassland types, a relatively large proportion of rare and endangered target species can be expected to form long‐term persistent seed banks. However, only under marginal conditions that facilitate seed survival in the soil (e.g. fallow) are these persistent seed banks likely to contribute to restoration. We conclude that easily observed traits of persistence such as seed weight, size and shape do not meet the accuracy needed in scientific and practical applications. Thus, there is a crucial demand for further seed bank studies in poorly investigated habitats and of rare species.     

Restoration success of low‐production plant communities on former agricultural soils after top‐soil removal

Abstract. The success inrestoring seven low‐production vegetation types on former agricultural soil after top‐soil removal was investigated. The colonization and establishment of target species in permanent plots was recorded during the first nine years after restoration measures were taken. For each permanent plot abiotic site conditions were used to determine which of the vegetation types could persist there. A comparison of the actual vegetation in the permanent plots with reference releves of the selected vegetation type revealed a gradually increasing similarity during consecutive years for five vegetation types. This was due to the occurrence of an increasing number of target species and the number of permanent plots they occurred in. However, nine years after top‐soil removal a large number of the target species were still lacking from the vegetation in the permanent plots, although most were present in the local species pool. Seed dispersal therefore seems to be a major limiting factor for restoration of these low‐production vegetation types on formerly agricultural soils.     

Effect of hydroxytyrosol‐rich preparations on phenolic‐linked antioxidant activity of seeds

Hydroxytyrosol‐rich extract (HRE) and hydroxytyrosol‐rich olive mill wastewater (HROMW) were used as exogenous growth enhancers to stimulate tomato seedling vigor. The tomato seeds soaking in 10% w/v HROMW or HRE solutions were optimum in maximally enhancing seedling performance according to biochemical seed vigor parameters. Biochemical parameters as the average glucose‐6‐phosphate dehydrogenase (G6PDH) activity in HRE‐treated seeds (915.11 nmoles min^?1 mg^?1 protein) was higher than control (629.58 nmoles min^?1 mg^?1 protein) and correlated with the increased phenolic content (3530 μg g^?1 fw) and 1,1‐diphenyl‐2‐picrylhydrazyl (DPPH)‐based antioxidant activity (70.60%), respectively. Some key enzymes, guaiacol peroxidase (GPX) (6100.65 nmoles min^?1 mg^?1 protein) and catalase (2.04 μmoles min^?1 mg^?1 protein), were also higher in response to treatments and correlated with enhanced phenolic content and antioxidant activity. This study supports the hypothesis that the exogenous phenolic application stimulates the pentose phosphate pathway through an over‐expression of endogenous phenolic synthesis and an increase in free‐radical scavenging antioxidant activity. Therefore, the current study indicates the enhancement of seed vigor by HRE especially and HROMW as reflected by the stimulation of biochemical responses.     

Immediate increase in plant species richness after clear‐cutting of boreal herb‐rich forests

Abstract. The flora of clear‐cuttings with soil scarification in forests was compared < 1–2 yr after cutting with that in mature herb‐rich forests in SW Finland. The total and mean numbers of vascular plant species both in the study areas and in the sample plots, were almost double in clear‐cut areas compared to mature forests. Clear‐cuttings and mature forests were distinctly separated by multivariate analyses (DCA). Several dozen species not found in forests were common in clear‐cut areas. Most of them probably belong to the neglected native species pool of early boreal forest succession and are dependent on the long‐term persistent seed bank or effective wind dispersal. It is emphasized that in forests many plant species are confined to the very early stages (< 2 yr) after disturbance. The storage effect of the long‐term persistent seed bank is crucial for the maintenance of plant diversity in boreal forests. Probably a considerable part of the flora of agricultural areas is composed of species that were originally disturbance dependent forest plants. Scarification is beneficial to disturbance dependent plants and may be useful in restoration of populations of species of early succession.     

Top‐soil translocation as a technique in the re‐creation of species‐rich meadows

Abstract. In France, most civil engineering and excavation projects are at present accompanied by compensatory measures with the aim of preserving biodiversity. In order to avoid the destruction of a habitat of high conservation interest in NE France, harbouring two legally protected plant species, an experiment of soil translocation was conducted on an area of 1 ha. The donor site was an extensively managed mesophilic meadow and the receiving site was a neighbouring arable land. The vegetation of the translocated meadow was described 8 and 17 months after soil translocation, and compared (1) with vegetation resulting from more classical restoration techniques tested on the arable land (natural regeneration and seed mixture sowing) and (2) with the soil seed bank and vegetation previously present on the donor site. Results showed that the soil translocation technique permitted the development of many meadow species, including two legally protected species, and few ruderal species despite a large area of bare ground. This technique seems effective in terms of number and abundance of meadow species compared to natural regeneration and commercial seed sowing. In the case of the two classical methods, species richness was lower and only widespread species were present. Topsoil translocation provides a good compensatory method to avoid habitat and species destruction. However, the study should be continued, with the aim of assessing the longer term development and stabilization of the vegetation of the translocated meadow.     

Seed dispersal in a polder after partial tidal restoration: Implications for salt‐marsh restoration

Question: The vegetation in a polder after partial tidal restoration does not resemble the targeted salt‐marsh vegetation. Is this difference in vegetation due to lack of dispersal or unsuitable abiotic conditions? What could be done for a better restoration of the site? Location: Northwestern France. Methods: Seeds were trapped at the single inlet of the polder with a 200‐μ m mesh net to estimate inputs of seeds from the bay. In parallel, seed dispersal was studied in the polder by placing Astroturf® seed traps on the surface of the sediment at three different elevations in three distinct areas. Abiotic conditions such as flooding frequency, water table level and soil salinity were monitored. Results: All but one species from the adjacent salt marshes were trapped at the inlet. Not all of these species were on the seed traps inside the polder. Seed dispersal was not homogeneous in the polder and seed trap content mostly discriminated in function of their elevation. Salinity and water logging at the bottom of the slope were very high compared to tolerance of most halophytes but decreased rapidly higher up the slope. Conclusions: The development of salt marsh target species is highly restricted by limited hydrochory inside the polder but also by unfavourable soil conditions induced by the actual hydrological regime. Halophytes are excluded at the bottom of the slope by abiotic conditions and out‐competed by sub‐halophytes higher up. In order to restore salt marsh vegetation inside the polder, a larger opening should be induced in order to increase the flooded surface, and diminish water logging and flooding frequencies.     

Plant traits: Their role in the regeneration of alpine plant communities in sub‐arctic Finland

Abstract. Question: How do the relative frequencies of plant traits (clonality, growth form, seed weight, diaspore morphology) vary during the life cycle and how does this affect regeneration? Location: Alpine meadow and heath communities at Kilpisjärvi, sub‐Arctic Finland. Methods: Control plots and three treatments were used to measure relative species abundances for five life cycle stages: standing vegetation, seed rain, seed bank and seedlings emerging in gaps and in closed vegetation. Results: The relative frequencies of plant traits varied between the life cycle stages. The meadows were dominated by weakly clonal herbs, small or intermediate seeds and unappendaged diaspores, while the heaths were dominated by clonal dwarf shrubs, small seeds and fleshy fruits. In the meadows, species with small seeds dominated during the seed rain and in the seedling stage in gaps, while species with intermediate seeds dominated the seed bank and the seedling stage in closed vegetation. Species with unappendaged diaspores dominated throughout the life cycle. In the heaths, seed bank and seedling stage were practically absent. Conclusions: The observed differences in plant trait spectra between life cycle stages indicate that important environmental factors differ among the stages. Small seeds are advantageous for dispersal, whereas intermediate seeds have a greater probability of germinating and establishing in closed vegetation. Appendages facilitate dispersal, whereas unappendaged diaspores favour seed burial. Although the plant growth form spectrum largely reflects environmental constraints during the regeneration cycle, information on seed weight and diaspore morphology improves our knowledge of the relative importance of morphological adaptations of sexual structures in different stages during the life cycle.     

Point Processes for Fine‐Scale Spatial Genetics and Molecular Ecology

This paper introduces point processes into fine‐scale spatial genetics and molecular ecology. Datasets given in the form of a complete map of individuals and their genotypes can be analyzed by means of the theory of marked or multivariate point processes. Beginning with reformulation of conventional spatial autocorrelation statistics in genetics by the language of point processes, this paper first shows an example of point process models that describe spatial patterns of both tree locations and their genotypes, on the assumption of limited seed dispersal and long pollen movement. The results show that isolation‐by‐distance slightly occurs from the assumption above, and more importantly, an increment of the degree of clustering of trees reduces the degree of genetic clustering. Next, the point process model is applied to field data of secondary forest regenerated after seed tree harvesting, and tests the hypothesis that the current population was formed only from a small number of seed trees. The hypothesis was not acceptable, instead, the alternative assuming advance reproduction conducted prior to the harvesting is supported. The results of this first trial of point process models suggest that point processes can provide a useful mathematical methodology in fine‐scale spatial genetics and molecular ecology.     

Vegetation restoration of secondary bare saline‐alkali patches in the Songnen plain,China

Questions: What factors limit vegetation restoration of secondary bare saline‐alkaline patches (BSAP) in the Songnen grassland of northeast China? Is there any adaptive approach to promote revegetation in the shortest time possible and at a low cost? Location: Northeast China. Methods: Considering the climate, soil saline‐alkalization and available seed sources, a new approach was adopted to restore vegetation in BSAP, which were formed by the degradation of typical Leymus chinensis grasslands owing to long‐term overgrazing. The experimental treatments included no treatment (CK), fencing (F), fencing+inserting cornstalks (FS), fencing+inserting cornstalks+sowing L. chinensis (FSL) and fencing+inserting cornstalks+sowing Puccinellia chinampoensis (FSP). The assumptions behind inserting cornstalks were not only that they would create safe sites for initial revegetation but also that they would enhance seed input by trapping and containing the seeds from seed movement on the BSAP surface. Results: Seed bank shortage was an important factor limiting initial revegetation in BSAP; seed movement on the BSAP surface could provide the necessary seed source if it were contained by effective measures. Vegetation at the sites FS, FSL and FSP was restored well in terms of the above‐ground biomass and coverage. Inserted cornstalks acted as safe sites that enhanced the plant survival rate in BSAP; they also enhanced the ability to contain seed movement, thus providing a seed source for initial revegetation. Along with initial revegetation, tussocks around cornstalks can provide better safe sites, which in turn can accelerate subsequent vegetation restoration in BSAP. Conclusions: The approach entails the strategic use of diverse seed sources and the construction of safe sites with agricultural byproducts (cornstalks); therefore, it is a low‐cost method and can be used on a widespread scale. The results provide vigorous support in favor of vegetation restoration in BSAP and severely degraded grasslands in the region. In practice, this approach can be used in degraded ecosystems with compacted soil surfaces (including arid and salt‐affected soils) to promote revegetation in various regions.     

Unintended changes in protein expression revealed by proteomic analysis of seeds from transgenic pea expressing a bean α‐amylase inhibitor gene

Seeds of genetically modified (GM) peas (Pisum sativum L.) expressing the gene for α‐amylase inhibitor‐1 (αAI1) from the common bean (Phaseolus vulgaris L. cv. Tendergreen) exhibit resistance to the pea weevil (Bruchus pisorum). A proteomic analysis was carried out to compare seeds from GM pea lines expressing the bean αAI1 protein and the corresponding αAI1‐free segregating lines and non‐GM parental line to identify unintended alterations to the proteome of GM peas due to the introduction of the gene for αAI1. Proteomic analysis showed that in addition to the presence of αAI1, 33 other proteins were differentially accumulated in the αAI1‐expressing GM lines compared with their non‐GM parental line and these were grouped into five expression classes. Among these 33 proteins, only three were found to be associated with the expression of αAI1 in the GM pea lines. The accumulation of the remaining 30 proteins appears to be associated with Agrobacterium‐mediated transformation events. Sixteen proteins were identified after MALDI‐TOF‐TOF analysis. About 56% of the identified proteins with altered accumulation in the GM pea were storage proteins including legumin, vicilin or convicilin, phaseolin, cupin and valosin‐containing protein. Two proteins were uniquely expressed in the αAI1‐expressing GM lines and one new protein was present in both the αAI1‐expressing GM lines and their αAI1‐free segregating lines, suggesting that both transgenesis and transformation events led to demonstrable changes in the proteomes of the GM lines tested.     

Seed bank dynamics of two obligate seeders, <Emphasis Type="Italic">Cistus monspeliensis</Emphasis> and <Emphasis Type="Italic">Rosmarinus officinalis</Emphasis>, in relation to time since fire

Many species in Mediterranean-type ecosystems regenerate after fire by seed germination from soil seed banks. Seed bank dynamics of two of those obligate seeders, Cistus monspeliensis and Rosmarinus officinalis, were investigated in relation to stand age since fire in southwestern Portugal. Soil seed density, annual seed input, annual seed losses through germination and seed persistence were compared between species at stands differing in age since fire (5, 10 and 35 years). Soil seed density and seed input increased over the first decade after fire and were lowest at 35-year-old stands for C. monspeliensis. In R. officinalis, few seeds were produced and found in the soil at early stages, and maximum seed input and soil seed density were attained at 35-year-old stands. Soil seed density was mostly driven by seed production in both species, which is largely dependent on plant traits and population dynamics related to fire. Overall, stand age since fire had a negligible effect on seed germination, seed persistence and viability. Ten to 39% of buried seeds were not recovered after 1 year, and viability of seeds recovered was 97–100% for C. monspeliensis and only 0–3% for R. officinalis. Variation in plant traits within the seeder syndrome was evidenced by this study. R. officinalis evidenced lower seed persistence, lower proportion of viable seed produced and lower density of viable soil seed than C. monspeliensis at any stage after fire. R. officinalis is expected to depend largely on previous year seed production for population replacement after fire.     

Long‐term seed bank dynamics in a temperate forest under conversion from coppice‐with‐standards to high forest management

Questions: How do changes in forest management, i.e. in disturbance type and frequency, influence species diversity, abundance and composition of the seed bank? How does the relationship between seed bank and vegetation change? What are the implications for seed bank dynamics? Location: An ancient Quercus petraea — Carpinus betulus forest in conversion from coppice‐with‐standards to regular Quercus high forest near Montargis, France. Methods: Seed bank and vegetation were sampled in six replicated stand types, forming a chronosequence along the conversion pathway. The stand types represented mid‐successional stages of stands in transition from coppice‐with‐standards (to high forest (16 plots) and early‐ and mid‐successional high forest stands (32 plots). Results: Seed bank density and species richness decreased with time since last disturbance. Adjusting for seed density effects obscured species richness differences between stand types, but species of later seres were nested subsets of earlier seres, implying concomitant shifts in species richness and composition with time since disturbance. Later seres were characterized by species with low seed weight and high seed longevity. Seed banks of early seres were more similar to vegetation than to later seres. Conclusions: Abandonment of the coppice‐with‐standards regime altered the seed bank characteristics, as well as its relationship with vegetation. Longer management cycles under high forest yield impoverished seed banks. For their persistence, seed bank species will increasingly rely on management of permanently open areas in the forest landscape. Thus, revegetation at the beginning of new high‐forest cycles may increasingly depend on inflow from seed sources.     

Restoration of species‐rich flood‐plain meadows from abandoned arable fields in NE France

Abstract. Attempts to restore species‐rich flood‐plain meadows from abandoned arable fields in the valley of the river Meuse, NE France, were studied. The study area was sown with a commercial seed mixture, composed of Phleumpratense, Festuca pratensis, Lolium perenne and Trifolium repens. The above‐ground vegetation in the study area 1, 2 and 3 yr after restoration was compared to (1) the vegetation present during the previous 5‐yr fallow stage and (2) target flood‐plain meadows. Before restoration, the above‐ground fallow vegetation was dominated by ruderal and annual species, while only very few meadow species were present. Sowing led to tall, dense vegetation, mainly dominated by the sown species. Ruderal and annual species had decreased 3 yr after restoration, but target species were still poorly represented. Species richness was significantly lower in the sown site than in the semi‐natural target meadows and the vegetation had a different composition. Analysis of the soil seed bank of the restored meadow showed that only a few meadow species were present and that it was dominated by a few ruderal species. Three years after sowing, the vegetation of our experimental site is moving slowly towards the target communities but impoverished seed sources seem to limit the success of this restoration operation and will lead to under‐saturated communities.