Influence of Captan on some microorganisms and microbial processes related to the nitrogen cycle

Captan was applied to laboratory-incubated agricultural soil and to bacterial cultures to determine its effects on total counts of soil microorganisms, nitrification, ammonification of urea and asymbiotic dinitrogen fixation. In Captan-treated soils, total count of fungi, bacteria and actinomycetes decreased significantly only at a relatively high fungicide concentration (1000 μg.g⁻¹). Fungi and actinomycetes were more affected than bacteria. While oxidation of ammonia in an enriched, actively nitrifying culture was almost totally inhibited by Captan, ammonification of urea in incubated soil was only partly depressed. The depressing effect of Captan was more pronounced in cultures of Micrococcus than in those of Proteus. Asymbiotic dinitrogen fixation in nutrient-ammended soil was promoted during the first week and depressed on prolonged exposure to the fungicide depending on its first concentration. In autoclaved Azotobacter-inoculated soil a similar but less pronounced effect was noticed. Fixation by Azotobacter caltures was insensitive to Captan. In contrast, growth ofRhizobium phaseoli, R. leguminosarum andR. japonicum in yeast-extract-mannitol medium was adversly affected by Captan, particularly at 200 μg.ml⁻¹. Nodulation of pea and mung bean (1 month old potted plants) grown from surface-sterilized inoculated seeds in aptan-treated soil was also significantly depressed. Both total number of nodules decreased with increasing concentration of the fungicide, but the inhibitory effect was more pronounced in the number of effective nodules.     

Accumulation of Heavy Metals by Ectomycorrhizal Fungi Colonizing Birch Trees Growing in an Industrial Desert Soil

The results of analyses conducted to determine contents of Cd(II) and Pb(II) in mushrooms of mycorrhizal fungi and selected parts of birches growing in an industrial desert surrounding a nonferrous works are presented in this study. The fruiting bodies of fungi accumulated several times higher contents (up to 80 μg g⁻¹ dry weight) of Cd(II) compared to those found in the soil (20 μg g⁻¹ dry weight). In contrast, the mushroom contents of Pb(II) were only slightly increased (up to 895 μg g⁻¹ dry weight) than those present in the soil (500 μg g⁻¹ dry weight). However, fivefold higher concentrations of the metals were found in the mycorrhizal roots. Comparing the distribution of the metals analysed, the protective role of the ectomycorrhizae in relation to the host tree was indicated. Mycorrhizal fungi persistently fixed heavy metals, forming an efficient biological barrier that reduced movement of the metals in birch tissues.     

Linkages between N turnover and plant community structure in a tundra landscape

The spatial distribution of organic soil nitrogen (N) in alpine tundra was studied along a natural environmental gradient, covering five plant communities, at the Latnjajaure Field Station, northern Swedish Lapland. The five communities (mesic meadow, meadow snowbed, dry heath, mesic heath, and heath snowbed) are the dominant types in this region and are differentiated by soil pH. Net N mineralization, net ammonification, and net nitrification were measured using 40-day laboratory incubations based on extractable NH₄⁺ and NO₃⁻. Nitrification enzyme activity (NEA), denitrification enzyme activity (DEA), amino acid concentrations, and microbial respiration were measured for soils from each plant community. The results show that net N mineralization rates were more than three times higher in the meadow ecosystems (mesic meadow 0.7 μg N g⁻¹ OM day⁻¹ and meadow snowbed 0.6 μg N g⁻¹ OM day⁻¹) than the heath ecosystems (dry heath 0.2 μg N g⁻¹ OM day⁻¹, mesic heath 0.1 μg N g⁻¹ OM day⁻¹ and heath snowbed 0.2 μg N g⁻¹ OM day⁻¹). The net N mineralization rates were negatively correlated to organic soil C/N ratio (r = −0.652, P < 0.001) and positively correlated to soil pH (r = 0.701, P < 0.001). Net nitrification, inorganic N concentrations, and NEA rates also differed between plant communities; the values for the mesic meadow were at least four times higher than the other plant communities, and the snowbeds formed an intermediate group. Moreover, the results show a different pattern of distribution for individual amino acids across the plant communities, with snowbeds tending to have the highest amino acid N concentrations. The differences between plant communities along this natural gradient also illustrate variations between the dominant mycorrhizal associations in facilitating N capture by the characteristic functional groups of plants. Responsible Editor: Bernard Nicolardot     

Effect of nitrate and glucose addition on denitrification and nitric oxide reductase (<Emphasis Type="Italic">cnorB</Emphasis>) gene abundance and mRNA levels in <Emphasis Type="Italic">Pseudomonas mandelii</Emphasis> inoculated into anoxic soil

The effect of glucose addition (0 and 500 μg C g⁻¹ soil) and nitrate (NO₃) addition (0, 10, 50 and 500 μg NO₃–N g⁻¹ soil) on nitric oxide reductase (cnorB) gene abundance and mRNA levels, and cumulative denitrification were quantified over 48 h in anoxic soils inoculated with Pseudomonas mandelii. Addition of glucose-C significantly increased cnorB _p (P. mandelii and related species) mRNA levels and abundance compared with soil with no glucose added, averaged over time and NO₃ addition treatments. Without glucose addition, cnorB _p mRNA levels were higher when 500 μg NO₃–N g⁻¹ soil was added compared with other NO₃ additions. In treatments with glucose added, addition of 50 μg NO₃–N g⁻¹ soil resulted in higher cnorB _p mRNA levels than soil without NO₃ but was not different from the 10 and 500 μg NO₃–N g⁻¹ treatments. cnorB _p abundance in soils without glucose addition was significantly higher in soils with 500 μg NO₃–N g⁻¹ soil compared to lower N-treated soils. Conversely, addition of 500 μg NO₃–N g⁻¹ soil resulted in lower cnorB _p abundance compared with soil without N-addition. Over 48 h, cumulative denitrification in soils with 500 μg glucose-C g⁻¹ soil, and 50 or 500 μg NO₃–N g⁻¹ was higher than all other treatments. There was a positive correlation between cnorB _p abundance and cumulative denitrification, but only in soils without glucose addition. Glucose-treated soils generally had higher cnorB _p abundance and mRNA levels than soils without glucose added, however response of cnorB _p abundance and mRNA levels to NO₃ supply depended on carbon availability.     

Low Nitrification Rates in Acid Scots Pine Forest Soils Are Due to pH-Related Factors

In a previous study, ammonia-oxidizing bacteria (AOB)-like sequences were detected in the fragmentation layer of acid Scots pine (Pinus sylvestris L.) forest soils (pH 2.9–3.4) with high nitrification rates (>11.0 μg g⁻¹ dry soil week⁻¹), but were not detected in soils with low nitrification rates (<0.5 μg g⁻¹ dry soil week⁻¹). In the present study, we investigated whether this low nitrification rate has a biotic cause (complete absence of AOB) or an abiotic cause (unfavorable environmental conditions). Therefore, two soils strongly differing in net nitrification were compared: one soil with a low nitrification rate (location Schoorl) and another soil with a high nitrification rate (location Wekerom) were subjected to liming and/or ammonium amendment treatments. Nitrification was assessed by analysis of dynamics in NH₄ ⁺-N and NO₃ ⁻-N concentrations, whereas the presence and composition of AOB communities were assessed by polymerase chain reaction–denaturing gradient gel electrophoresis and sequencing of the ammonia monooxygenase (amoA) gene. Liming, rather than ammonium amendment, stimulated the growth of AOB and their nitrifying activity in Schoorl soil. The retrieved amoA sequences from limed (without and with N amendment) Schoorl and Wekerom soils exclusively belong to Nitrosospira cluster 2. Our study suggests that low nitrification rates in acidic Scots pine forest soils are due to pH-related factors. Nitrosospira cluster 2 detected in these soils is presumably a urease-positive cluster type of AOB.     

Natural and induced cadmium-accumulation in poplar and willow: Implications for phytoremediation

Potentially poplars and willows may be used for the in situ decontamination of soils polluted with Cd, such as pasturelands fertilised with Cd-rich superphosphate fertiliser. Poplar (Kawa and Argyle) and willow (Tangoio) clones were grown in soils containing a range (0.6–60.6 μg g⁻¹ dry soil) of Cd concentrations. The willow clone accumulated significantly more Cd (9–167 μg g⁻¹ dry matter) than the two poplar clones (6–75 μg g⁻¹), which themselves were not significantly different. Poplar trees (Beaupré) sampled in situ from a contaminated site near the town of Auby, Northern France, were also found to accumulate significant quantities (up to 209 μg g⁻¹) of Cd. The addition of chelating agents (0.5 and 2 g kg⁻¹ EDTA, 0.5 g kg⁻¹ DTPA and 0.5 g kg⁻¹NTA) to poplar (Kawa) clones caused a temporary increase in uptake of Cd. However, two of the chelating agents (2 g kg⁻¹ EDTA and 0.5 g kg⁻¹ NTA) also resulted in a significant reduction in growth, as well as abscission of leaves. If the results obtained in these pot experiments can be realised in the field, then a single crop of willows could remove over 100 years worth of fertiliser-induced Cd contamination from pasturelands. This revised version was published online in June 2006 with corrections to the Cover Date.     

Soil algal communities inhabiting zinc and lead mine spoils

Algal communities inhabiting four calamine mine spoils differing in time since cessation of exploitation and loaded with high concentrations of zinc (20,284–61,599 μg g⁻¹ soil DW), lead (2,620–3,885 μg g⁻¹ DW) and cadmium (104–232 μg g⁻¹ DW) were studied. In dump soils of slightly alkaline pH (7.28–7.52) and low nutrient (, , ) concentrations, chlorophyll a content ranged from 0.41 to 2.27 μg g⁻¹ soil DW. In total, 23 algal species were recorded. Chlorophyta were the dominant taxonomic group (42–55% of all identified species) followed by Cyanobacteria (28–36%) and Heterokontophyta (13–21%). The highest species richness (18) was observed in the oldest dump (120 years old) with natural succession, while in younger dumps it was lower (11–15). Total algal abundance ranged between 5.5 and 19.1 × 10² ind. g⁻¹ soil DW, and values of Margalef’s diversity indices (1.59–2.25) were low. These results may suggest that both high concentrations of heavy metals and low nutrient content influenced the algal communities in all the dumps studied. The differences in algal microflora observed between tailing dumps may indicate that habitat quality improved with time and that algae isolated from Zn/Pb-loaded soils may be Zn/Pb-resistant ecotypes of ubiquitous species.     

An evaluation of carbon disulphide as a sulphur fertilizer and as a nitrification inhibitor

There was little release of extractable SO₄-S during four weeks from CS₂ applied by injecting into two S-deficient soils. In this incubation experiment, the rate of CS₂ was 30 μg S g⁻, placement was injection at 9 cm depth, soil temperature was 20°C, and soil moisture tension was 33 kPa. The yield of barley forage after seven weeks in the greenhouse showed only small increases from 10 or 30 μg S g⁻¹ of CS₂ as compared to Na₂SO₄, on the two soils. While CS₂ supplied little plant available S in the short term, it was an effective inhibitor of nitrification. In the laboratory, or in the field, the injection of CS₂ (with N fertilizers) at a point 9 cm into the soils either stopped or reduced nitrification. In one laboratory experiment, 35 μg of CS₂ g⁻¹ of soil with urea reduced nitrification for at least four weeks; and in another experiment 20 μg of CS₂ g⁻¹ of soil with aqua NH₃ nearly or completely inhibited nitrification at 20 days. In two field experiments, 3 and 12 μg of CS₂ g⁻¹ of soil (or 6 and 24 kg ha⁻¹) with aqua NH₃ inhibited nitrification from October to the subsequent May. In addition, CS₂ reduced the amount of ammonium produced from the soil N, both in these two field experiments and in the laboratory experiments. That is to say, CS₂ injected at a point, inhibited both nitrification and ammonification. In other field experiments, CS₂ at a rate of 10 kg ha⁻¹ was injected in bands 9 cm deep with urea in October, and by May there was still reduced nitrification. Less than half of the fall-applied urea alone was recovered as mineral N, but with the application of CS₂ the recovery was increased to three-quarters. The yield and N uptake of barley grain was increased where fall-applied banded urea or aqua NH₃ received banded CS₂, (NH₄)₂CS₃, or K₂CS₃. The average increase in yield from fall-applied fertilizer, from inhibitor with fall-applied fertilizer, and from spring-applied fertilizer was 800, 1370, and 1900 kg ha⁻¹, respectively. In the same order, the apparent % recovery of fertilizer N in grain was 24, 42, and 60.     

Critical Levels of Selenium in Different Crops Grown in an Alkaline Silty Loam Soil Treated with Selenite-Se

Critical levels of selenium in raya (Brassica juncea Czern L.), maize (Zea mays L.), wheat (Triticum aestivum L.) and rice (Oryza sativa L.) were worked out by growing these crops in an alkaline silty loam soil treated with different levels of selenite-Se ranging from 1 to 25 μg g⁻¹ soil. Significant decrease in dry matter yield was observed above a level of 5 μg Se g⁻¹ soil in raya and maize; 4 μg Se g⁻¹ soil in wheat and 10 μg Se g⁻¹ soil in rice shoots. The critical level of Se in plants above which significant decrease in yield would occur was found to be 104.8 μg g⁻¹ in raya, 76.9 μg g⁻¹ in maize, 41.5 μg g⁻¹ in rice and 18.9 μg g⁻¹ in wheat shoots. Significant coefficients of correlation were observed between Se content above the critical level and dry matter yield of raya as well as rice (r = −0.99, P ≤ 0.01), wheat (r = −0.97, P ≤ 0.01) and maize ((r = −0.96, P ≤ 0.01). A synergistic relationship was observed between S and Se content of raya (r = 0.96, P ≤ 0.01), wheat (r = 0.89, P ≤ 0.01), rice (r = 0.85, P ≤ 0.01) and maize (r = 0.84, P ≤ 0.01). Raya, maize and rice absorbed Se in levels toxic for animal consumption (i.e. > 5 mg Se kg⁻¹) when the soil was treated with more than 1.5 μg Se g⁻¹. In case of wheat, application of Se more than 3 μg g⁻¹ soil resulted in production of toxic plants.     

Response of cyanobacteria to arsenic toxicity

Arsenic content of cyanobacterial biomass, soil and water samples from arsenic-contaminated area of eastern India were estimated. It was found that arsenic content in cyanobacterial biomass (276.9 μg g⁻¹) was more than soil (19.01 μg g⁻¹) or water sample (244.13 μg L⁻¹). Shallow tube well water showed more arsenic (244.13 μg L⁻¹) than deep tube well water (146.13 μg L⁻¹). Arsenic resistant genera recorded from the contaminated area were Oscillatoria princeps, Oscillatoria limosa, Anabaena sp. and Phormidium laminosum. Among these, P. laminosum was isolated and exposed to different concentration of Arsenic in vitro (0.1–100 ppm) to study the toxicity level of arsenic. Modulation in stress enzymes and stress-related compounds were studied in relation to lipid peroxidase, catalase, super oxide dismutase (SOD), ascorbate peroxidase (APX), reduced glutathione and carotenoids in arsenic exposed biomass to understand the resistance mechanism of the genus both in laboratory condition as well as in natural condition. Arsenic content of cyanobacterial biomass from contaminated area was more (276.9 μg g⁻¹) than laboratory exposed sample (37.17 μg g⁻¹), indicating bioconcentration of arsenic in long-term-exposed natural biomass. Overall, more activity of catalase was recorded in cyanobacterial biomass of natural condition whereas SOD and APX were at higher level in laboratory culture.     

Hyperaccumulation of nickel by two Alyssum species from the serpentine soils of Iran

Serpentine soils, which contain relatively high concentrations of nickel and some other metals, are the preferred substrate for some plants, especially those that accumulate Ni in their tissues. In temperate regions more Ni-hyperaccumulator plants are found in Alyssum than in any other genus. In this study, serpentine soils of two areas (Marivan and Dizaj) in the west/northwest of Iran and also perennial Alyssum plants growing on these soils were analyzed for Ni and some other metals. The highest concentrations of total metals in the soils of these areas for Ni, Cr, Co and Mn were 1,350, 265, 94 and 1,150 μg g⁻¹, respectively, while concentrations of Fe, Mg and Ca reached 3.55%, 16.8% and 0.585% respectively. The concentration of exchangeable Ni in these soils is up to 4.5 μg g⁻¹. In this study two Alyssum species, A. inflatum and A. longistylum, have been collected from Marivan and Dizaj, respectively. Analysis of leaf dry matter shows that they can contain up to 3,700 and 8,100 μg Ni g⁻¹, respectively. This is the first time that such high Ni concentrations have been found in these species. The concentrations of other metals determined in these species were in the normal range for serpentine plants, except for Ca, which was higher, up to 5.3% and 3.5%, respectively     

Microbial diversity of topographical gradient profiles in Fushan forest soils of Taiwan

To evaluate the microbial diversity of Fushan forest soils, the variation of soil properties, microbial populations, and soil DNA with soil depth in three sites of different altitude were analyzed. Microbial population, moisture content, total organic carbon (C_org), and total nitrogen (N_tot) decreased with increasing soil depth. The valley site had the lowest microbial populations among the three tested sites due to the low organic matter content. Bacterial population was the highest among the microbial populations. The ratios of cellulolytic microbes to the total bacteria in organic layers were high, implying their roles in the carbon cycle. The microbial biomass carbon (C_mic) and nitrogen (N_mic) contents ranged from 130.5 to 564.1 μg g⁻¹ and from 16.7 to 95.4 μg g⁻¹, respectively. The valley had the lowest C_mic and N_mic. The organic layer had the highest C_mic and N_mic and decreased with soil depth. Analysis using denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction (PCR) amplicons of 16S rDNA showed that the bacterial diversity of the three sites were very similar to each other in the major bands, and the variation was in the minor bands. However, the patterns in PCR-DGGE profile through gradient horizons were different, indicating the prevalence of specific microbes at different horizons. These results suggest that the microbial diversity in the deeper horizons is not simply the diluted analogs of the surface soils and that some microbes dominate only in the deeper horizons. Topography influenced the quantity and diversity of microbial populations.     

Influence of the herbicide glyphosate on soil microbial community structure

The side effects of glyphosate on the soil microflora were monitored by applying a range of glyphosate concentrations (0, 2, 20, and 200 μg g⁻¹ herbicide) to incubated soil samples, and following changes in various microbial groups over 27 days. Bacterial propagule numbers were temporarily enhanced by 20 μg g⁻¹ and 200 μg g⁻¹ glyphosate, while actinomycete and fungal propagule numbers were unaffected by glyphosate. The frequency of three fungal species on organic particles in soil was temporarily enhanced by 200 μg g⁻¹ glyphosate, while one was inhibited. One species was temporily enhanced on mineral particles. However, many of these fungi were inhibited by 200 μg g⁻¹ glyphosate in pure culture. There was little agreement between species responses to glyphosate in incubated soil samples and in pure culture.     

Effect of Watering and Soil Moisture on Mercury Emissions from Soils

This paper presents data from experiments that measured Mercury (Hg) flux as a function of water addition and subsequent soil drying, and maintenance of soil water content over time utilizing small dynamic gas exchange chambers and large mesocosms. When soil surfaces were dry and water was added at an amount less than that necessary to saturate the soil an immediate large (relative to dry soil flux) release of Hg occurred. Diel Hg emissions from soils, unenriched (0.02 μg g⁻¹) and enriched (3 μg g⁻¹) in Hg and wet below saturation, were significantly elevated above that occurring from dry soils (2–5 times depending on soil water content) for weeks to months. Enhancement of emissions from wet soils in direct sunlight were greater than that from soils shaded or in the dark suggesting that a synergism exists between soil moisture and light. When soils were watered to saturation Hg emissions were suppressed or remained the same depending on the degree of saturation. It is hypothesized that the addition of soil water in amounts less than that necessary to saturate the soil surface results in an immediate release of elemental Hg from soil surface as the more polar water molecule out competes Hg for binding sites. As the water moves into the soil, Hg adsorbed to soil particles is desorbed into soil gas and dissolved in the soil water. The process of evaporation facilitates movement of Hg as mass flow to the soil surface where it is made available for subsequent release. The latter is hypothesized to be an important process by which Hg is recharged at the soil–air interface.     

The vitamin content of microalgae used in aquaculture

The vitamin content in four Australian microalgae, a Nannochloropsis-like sp., Pavlova pinguis, Stichococcus sp. and Tetraselmis sp., were examined. These were grown under a 12:12 h light:dark regimen (100 μmol photon m⁻²s⁻¹) and harvested during late-logarithmic phase. Typically, the content showed a two- to three fold range between the species. When expressed on a dry weight basis, the content of ascorbate ranged from 1.3 to 3.0 mg g⁻¹, β-carotene from 0.37 to 1.05 mg g⁻¹, α-tocopherol from 0.07 to 0.29 mg g⁻¹, thiamine from 29 to 109 μg g⁻¹, riboflavin from 25 to 50 μg g⁻¹, total folates from 17 to 24 μg g⁻¹, pyridoxine from 3.6 to 17 μg g⁻¹, cobalamin from 1.70 to 1.95 μg g⁻¹ and biotin from 1.1 to 1.9 μg g⁻¹. Retinol was detected only in Tetraselmis sp. (2.2 μg g⁻¹); any vitamins D₂ or D₃ were below the detection limit (≤0.45 μg g⁻¹). Nannochloropsis sp. was also grown under a 24:0 h light:dark light cycle and harvested at stationary phase. The content of most vitamins in Nannochloropsis sp. cultures differed significantly, and the degree of variation was similar to that observed between the four species grown under 12:12 h light:dark regimen (100 μmol photon m⁻²s⁻¹) and harvested during late-logarithmic phase. Thiamine content was also examined in six non-Australian strains commonly used in aquaculture, Chaetoceros muelleri, Thalassiosira pseudonana, Nannochloris atomus, Nannochloropsis oculata, Isochrysis sp. (T.ISO) and Pavlova lutheri. Values (average 61 μg g⁻¹; range 40 to 82) were similar to those in the Australian strains (average 61 μg g⁻¹; range 29 to 109) and increased during stationary phase (average 94 μg g⁻¹; 38 to 131). Comparison of the data with the known nutritional requirements for marine fish species and prawns suggests that the microalgae should provide excess or adequate levels of the vitamins for aquaculture food chains. The data may be used to guide the content of vitamins included in micro-diets developed as replacements for live diets. This revised version was published online in July 2006 with corrections to the Cover Date.     

Effects of three herbicides on soil microbial biomass and activity

Three post-emergence herbicides (2,4-D, picloram and glyphosate) were applied to samples of an Alberta agricultural soil at concentrations of 0, 2, 20, and 200 μg g⁻¹. The effects of these chemicals on certain microbial variables was monitored over 27 days. All herbicides caused enhancement of basal respiration but only for 9 days following application, and only for concentrations of 200 μg g⁻¹. Substrate-induced respiration was temporarily depressed by 200 μg g⁻¹ picloram and 2,4-D, and briefly enhanced by 200 μg g⁻¹ glyphosate. It is concluded that because changes in microbial variables only occurred at herbicide concentrations of much higher than that which occurs following field application, the side-effects of these chemicals is probably of little ecological significance.     

Inhibition of mycorrhizal symbiosis in Leucaena leucocephala by chlorothalonil

The effect of the fungicide, chlorothalonil, on vesicular-arbuscular mycorrhizal (VAM) symbiosis was studied in a greenhouse using Leucaena leucocephala as test plant. Chlorothalonil was applied to soil at 0, 50, 100 and 200 μg g⁻¹. The initial soil solution P levels were 0.003 μg mL⁻¹ (sub-optimal) and 0.026 μg mL⁻¹ (optimal). After 4 weeks, the sub-optimal P level was raised to 0.6 μg mL⁻¹ (high). The soil was either uninoculated or inoculated with the VAM fungus, Glomus aggregatum. The fungicide reduced mycorrhizal colonization of roots, development of mycorrhizal effectiveness, shoot P concentration and uptake and dry matter yields at all concentrations tested, although the highest inhibitory effect was noted as the concentration of the fungicide was increased from 50 to 100 μg g⁻¹. Phosphorus applied after four weeks tended to partially offset the deleterious effects of chlorothalonil in plants grown in the inoculated and uninoculated soil which suggests that the fungicide was interfering with plant P uptake. The results suggest that the use of chlorothalonil should be restricted to levels below 50 μg g⁻¹ if the benefits of mycorrhizal symbiosis are to be expected. Contribution from Hawaii Institute of Tropical Agriculture and Human Resources Journal Series No. 3464. Contribution from Hawaii Institute of Tropical Agriculture and Human Resources Journal Series No. 3464.     

Colonization of contaminated soil by an introduced bacterium: effects of initial pentachlorophenol levels on the survival of Sphingomonas chlorophenolica strain RA2

The survival of a Sphingomonas species that was introduced into pentachlorophenol (PCP)-contaminated soil was monitored with two complementary methods, a respiration-based assay and a most probable number (MPN) technique. Sphingomonas chlorophenolicastrain RA2 is a PCP-mineralizing bacterium that was introduced into soil contaminated with a range of PCP concentrations (0–300 μg PCP g⁻¹ soil). The population of introduced microorganisms was followed for 170 days using a substrate-induced growth-response method and a MPN assay that specifically targets PCP-mineralizing bacteria. Varying the initial PCP concentration resulted in the emergence of three distinct patterns of survival. In soil contaminated with 300 μg PCP g⁻¹ the population of S. chlorophenolica strain RA2 immediately declined following introduction, increased by 200-fold and leveled off by the end of the 170-day incubation. In contrast, populations of S. chlorophenolica strain RA2 declined to levels below detection limits in uncontaminated soil by the end of the experiment. Intermediate PCP concentrations (10–100 μg PCP g⁻¹ soil) resulted in the establishment of S. chlorophenolica strain RA2 that slowly declined in numbers. These results indicate that Sphingomonas chlorophenolica strain RA2 is an effective colonizer of PCP-contaminated soil but will not persist in the absence of PCP. Received 14 April 1999/ Accepted in revised form 24 June 1999     

Guggulsterone production in cell suspension cultures of the guggul tree, <Emphasis Type="Italic">Commiphora wightii</Emphasis>, grown in shake-flasks and bioreactors

Cell suspension cultures of Commiphora wightii, grown in modified MS medium containing 2,4-dichlorophenoxyacetic acid (0.5 mg l⁻¹) and kinetin (0.25 mg l⁻¹), produced ∼5 μg guggulsterone g⁻¹ dry wt. In a 2 l stirred tank bioreactor, the biomass was 5.5 g l⁻¹ and total guggulsterone was 36 μg l⁻¹.     

Recycling coffee and tea wastes to increase plant available Fe in alkaline soils

Coffee beans and tea leaves contain large amounts of potentially metal-chelating substances which could remain in the wastes after extraction by hot water. The following two experiments have been carried out: a) an incubation experiment with the objective of verify whether coffee grounds and green tea wastes could be used as an Fe chelating agent to increase Fe availability to plants in the soil; b) a pot experiment to verify the effect of those composts on the Fe content of the edible part of vegetables. Japanese leaf radish (Raphanus raphanus sp), whose the leaves are the edible part, was chosen as test plant. Calcareous subsoil (shell fossil soil) with original pH 9.3 and a B horizon of Andisol (Typic melanudand) with pH adjusted to 7.7 were used. For the incubation experiment, the treatments included of the direct addition of Fe at rates of 0 (control), 10, 20 and 40 μg g⁻¹ dry soil as ferrous sulfate (FS); coffee waste compost (CWC) and tea waste compost (TWC). Both composts contained approximately 40 g Fe kg⁻¹ dry mass. Thus, the total amounts of CWC and TWC added were of 0, 0.25, 0.5 and 1.0 mg g⁻¹ soil. Considering a soil density of 1 g cm⁻³ and 10 cm of plow layer, the total amounts of compost applied were of 0, 0.25, 0.5 and 1.0 ton ha⁻¹. Soil samples were collected after 30 and 60 days of incubation and then analyzed for plant available Fe. For the pot experiment, the doses of 0 (control) and 1 mg g⁻¹ soil of CWC or TWC were used to grow radish. Plants were harvested after 60 days. For samples incubated for 30 days, the CWC and TWC treatments led to the largest increase in the ammonium bicarbonate diethylene triamine pentaacetic acid (AB-DTPA) extractable Fe levels of both soils (P < 0.05). After 60 days of incubation the amounts of AB-DTPA-extractable Fe in soil samples treated with both composts were always higher than in those treated with FS alone. For both soils, the application of 40 μg Fe g⁻¹ dry soil as CWC or TWC enhanced significantly (P < 0.05) the total Fe content of radish shoots compared to the control. We concluded that it has been possible to increase the plant-available Fe in neutral to alkaline soils using coffee grounds and tea leaf wastes composted with FS. However, more research on the effectiveness in field conditions are necessary.