Skeletal biological distance studies in American physical anthropology: recent trends

Biological distance analysis, the dominant type of skeletal biological research during the 19th century, has become less visible in recent years. Although the proportion of American Journal of Physical Anthropology articles and published abstracts focusing on biodistance has remained fairly constant over the three decades between 1955 and 1985, the proportion of biodistance contributions relative to other skeletal biology studies has decreased. Emphasis in skeletal biology has shifted from the analysis of biological variation to investigations of health and diet, and within biodistance studies methodological issues have assumed prominence over purely analytical approaches. This paper investigates trends in biological distance analysis through a survey of articles and meetings abstracts published in the American Journal of Physical Anthropology from 1955 to 1985. The survey provides the historical context for five symposium papers on skeletal biological distance presented at the 1986 meeting of the American Association of Physical Anthropologists.     

Expression of genetic and environmental variation during ageing

Summary A selection experiment with Drosophila melanogaster was carried out to test some theories of ageing by calculating genetic parameters for a reproductive fitness trait at different ages. Successful selection for increased lifespan showed that longevity is a trait under genetic control. Positive genetic correlations between early and late fitness were found. These results do not support the pleiotropy theory of ageing which predicts a negative genetic correlation. Both environmental and additive genetic variation clearly increased with age. Increased environmental variation probably reflects the individuals' difficulties in coping with environmental stress. The increase in additive genetic variation supports the mutation accumulation theory of ageing, as well as other theories that postulate increased additive genetic variation with age.     

A 3-D geometric morphometric study of intraspecific variation in the ontogeny of the temporal bone in modern Homo sapiens

This study addresses how the human temporal bone develops the population-specific pattern of morphology observed among adults and at what point in ontogeny those patterns arise. Three-dimensional temporal bone shape was captured using 15 landmarks on ontogenetic series of specimens from seven modern human populations. Discriminant function analysis revealed that population-specific temporal bone morphology is evident early in ontogeny, with significant shape differences among many human populations apparent prior to the eruption of the first molar. As early as five years of age, temporal bone shape reflects population history and can be used to reliably sort populations, although those in closer geographic proximity and molecular affinity are more likely to be misclassified. The deviation of cold-adapted populations from this general pattern of congruence between temporal bone morphology and genetic distances, identified in previous work, was confirmed here in adult and subadult specimens, and was revealed to occur earlier in ontogeny than previously recognized. Significant differences exist between the ontogenetic trajectories of some pairs of populations, but not among others, and the angles of these trajectories do not reflect genetic relationships or final adult temporal bone size. Significant intrapopulation differences are evident early in ontogeny, with differences becoming amplified by divergent trajectories in some groups. These findings elucidate how the congruence between adult human temporal bone morphology and population history develops, and reveal that this pattern corresponds closely to that described previously for facial ontogeny.     

A review of recent regulatory and environmental toxicology studies on 1080: Results and implications

Sodium monofluoroacetate (1080) is a highly toxic vertebrate pesticide that has been widely used for possum and rabbit control in New Zealand since the 1950s. Because of its importance in pest control and the highly toxic nature of this compound, its environmental fate, persistence, non-target impacts and general toxicology have been and continue to be extensively studied. A series of in vitro (cell culture) and laboratory animal studies (in rats and mice) have recently been undertaken to update the regulatory toxicology database for 1080. Results of three different, complementary tests indicate that 1080 is not mutagenic, and therefore unlikely to cause cancer. Results of developmental toxicity studies indicate that 1080 causes developmental defects in rats when pregnant females are exposed to relatively high doses (0.33 and 0.75 mg kg(-1) day(-1)) on a daily basis during the period of organogenesis (from days 6 through to 17 of gestation). The developmental abnormalities observed were mild skeletal effects: slightly curved forelimbs, and bent or "wavy" ribs. These results highlight the highly toxic nature of 1080 and the need for extreme care when handling this pesticide during the manufacture and distribution of bait, but do not preclude its proper use. The morphological changes in foetuses observed in the recently completed rat developmental toxicity studies are likely to raise concern regarding the exposure of humans (particularly pregnant mothers) to 1080 through contamination of waterways after the aerial sowing of 1080 baits. However, ongoing monitoring (1990-98) of waterways from areas where 1080 baits have been aerially sown confirms that there is negligible risk of human contact with 1080 through this route of exposure.     

Pseudohypericin and hyperforin in two Turkish Hypericum species: Variation among plant parts and phenological stages

The genus Hypericum has received considerable interest from scientists, as it contains the variety of structurally diverse natural products which possess a wide array of biological properties, mainly hypericins and hyperforin. In the present study, variations of pseudohypericin and hyperforin were investigated in two Turkish species of Hypericum, namely Hypericum perfoliatum and Hypericum origanifolium. Wild growing plants were harvested at vegetative, floral budding, flowering, fresh fruiting and mature fruiting stages, and dissected into stem, leaf and reproductive tissues and assayed for chemical contents by high performance liquid chromatography method. Content of pseudohypericin and hyperforin in samples of the whole plant increased during the course of ontogenesis in both species. The highest levels of the chemicals were reached at full flowering (2.62 mg/g dry weight (DW) pseudohypericin and 1.84 mg/g DW hyperforin for H. perfoliatum; 0.93 mg/g DW pseudohypericin and 1.63 mg/g DW hyperforin for H. origanifolium). Among different reproductive parts, full opened flowers produced the highest amount of pseudohypericin (1.18 mg/g DW) and hyperforin (4.36 mg/g DW) in H. origanifolium. Similarly, the highest pseudohypericin accumulation was observed in full opened flowers in H. perfoliatum (7.41 mg/g DW) while floral buds of this species produced the highest amount of hyperforin (7.80 mg/g DW). These data can be useful when elucidating the medicinal properties of the species and the chemosystematic significance of hyperforin and pseudohypericin in the relationships among species of Hypericum.     

The environmental fate and behaviour of antifouling paint booster biocides: A review

Antifouling paint booster biocides are a group of organic compounds added to antifouling paints to improve their efficacy. They have become prevalent since the requirement for alternative antifouling paints formulations for small boats (< 25 m). This need followed a ban on the use of triorganotin biocides in antifouling paints for small boats, in the late 1980's. Worldwide, around eighteen compounds are currently used as antifouling biocides, viz. benzmethylamide, chlorothalonil, copper pyrithione, dichlofluanid, diuron, fluorofolpet, Irgarol 1051, Sea‐Nine 211, Mancozeb, Polyphase, pyridine‐triphenyl‐borane, TCMS (2,3,5,6‐tetrachloro‐4‐methylsulfonyl) pyridine, TCMTB [2‐(thiocyanomethylthio)benzothia‐zole], Thiram, tolyfluanid, zinc pyrithione (ZPT), ziram and Zineb. Any booster biocide released into the environment is subjected to a complex set of processes. These processes include transport mechanisms, transformation, degradation, cross media partitioning, and bioaccumulation. This paper reviews the fate and behaviour data currently available in the public domain concerning antifouling paint booster biocides.     

The studies of ecological environmental quality assessment in Anhui Province based on ecological footprint

Under the dual pressures of the socio-economic development and the increase in population density, the ecological environmental quality issues in Anhui Province have become increasingly prominent, which seriously handicap the sustainable development of regional economy, and it is more important to evaluate ecological environmental quality. By using the data of ecological environment, society, economy and population in Anhui Province, this paper measures ecological footprint, ecological environmental carrying capacity and ecological deficit and surplus in Anhui Province based on ecological footprint. The results show that ecological environmental quality in Anhui Province is not in the best state of the coordinated development, and the relationship between the supply and the demand of per ecological footprint almost is not in balance.     

环境因素对DNA甲基化的影响

在哺乳动物中, DNA甲基化是指在DNA 甲基转移酶(DNA-methyl transferase, DNMT)的作用下, 以S-腺苷甲硫氨酸提供甲基供体, 将其甲基转移到脱氧胞嘧啶环第5位碳原子形成甲基化脱氧胞嘧啶的共价修饰。DNA甲基化改变组蛋白和DNA之间的相互作用, 使染色质构象发生改变从而影响基因的表达, 总体来说DNA甲基化水平与基因的表达呈负相关。越来越多的报道证实, 环境因素可以影响表观遗传修饰, 其并没有涉及遗传信息的改变, 所以在一定范围内可以解释表型变化。文章围绕环境因素(温度、营养供给、异常化学因子、早期环境刺激和辐射等)对DNA甲基化产生的影响进行综述, 这些影响包括亲代和子代DNA甲基化的改变及子代行为和表型变化等方面, 以期进一步阐释环境因素与基因互作的关系。     

IGG: A tool to integrate GeneChips for genetic studies

To facilitate genetic studies using high-throughput genotyping technologies, we have developed an open source tool to integrate genotype data across the Affymetrix and Illumina platforms. It can efficiently integrate a large amount of data from various GeneChips, add genotypes of the HapMap Project into a specific project, flexibly trim and export the integrated data with different formats of popular genetic analysis tools, and highly control the quality of genotype data. Furthermore, this tool has sufficiently simplified its usage through its user-friendly graphic interface and is independent of third-party databases. IGG has successfully been applied to a genome-wide linkage scan in a Charcot-Marie-Tooth disease pedigree by integrating three types of GeneChips and HapMap project genotypes.     

A new approach for environmental risk assessment

Environmental problems, such as global warming, the limited supply of sustainable energy, the depletion of natural resources, hazardous emissions released into the atmosphere and waste, are increasing global concerns. Therefore, individuals, communities, and businesses need to address environmental protection and sustainability. Environmental impact assessments are needed to identify, mitigate, and control aspects that affect the environment or a company's products, services, or activities. In this study, a general environmental aspect and impact assessment approach, which can be applied to any company that is involved in the production or service sector, is created. An environmental impact pattern that consists of 10 main and 32 sub-categories was formed based on the ISO 14001, environmental studies and field applications. The developed approach was applied to the dyeing units of a manufacturing firm. Sixteen environmental aspects were identified and assessed using the environmental impact template via the environmental failure mode and effect analysis (E-FMEA) method. The developed-approach can be applied to each sector, which will enable us to perform a detailed analysis of the environmental aspects in the environmental impact category. This approach provides a checklist for the environmental impact studies of businesses and has been pioneered as an effective method for company resources to improve their environmental performance.     

Ontogenetic variation in occlusal shape of evergrowing molars in voles: An intravital study in Microtus gregalis (Arvicolinae,Rodentia)

In order to reveal patterns of ontogenetic change in occlusal shape of evergrowing molars in arvicolines, an intravital tooth printing method was applied to 20 individuals of Microtus gregalis born in captivity. Complexity patterns of the first lower molar were assessed by morphotype analysis of the anteroconid complex. Morphotype dental patterns were monitored using tooth prints at 0.5, 1, 2, 3 months of age, and postmortem. Ontogenetic changes in molar complexity and bilateral symmetry among right and left molars of the same individual during the process of tooth wear were assessed. Our results suggested that morphotype dental patterns could not be clearly established in half-month old animals due to presence of juvenile characters. For animals of 1 month and older, age differences in morphotype dental patterns were non-significant and negligible compared to among-individual variation. Within-individual differences among right and left molars, when present, were not related to age of an animal suggesting that bilateral asymmetry of morphotype dental pattern could be regarded as inherent characteristic of an individual persisting during post-juvenile tooth wear.     

The immaturity interval in Tetrahymena: Genetic and environmental sources of variation

The development of sexual maturity has been studied in Tetrahymena hegewischi. Progeny lines do not typically change from immaturity to mating with all different mating types during a single test interval, but about 30% do mature abruptly. Some testers are more likely than others to participate in the earliest mating reactions of progeny lines which do not mature abruptly. Subcaryonidal vegetative pedigrees of 10 pairs from 4 crosses revealed considerable intrapair variation in the time, measured in fissions, of maturity. The average intrapair coefficient of variation was 20%. A nested ANOVA revealed significant genomic effects on the immaturity interval, but no significant cytoplasmic or caryonidal effects; 56% of the total variation was non-genomic. Growth in different environments had highly significant effects on the immaturity interval. Subclones grown at 27°C with alternate day transfers took on the average 2 to 3 times as many fissions to mature as sister subclones grown at 27°C with daily transfers. Subclones grown at 18°C or 34°C and transferred on alternate days had intermediate maturation times. The greatest range in the immaturity interval among lines of the same genotype was from 34 to 143 fissions. The development of maturity in this species involves genetic control of timing, but the genetic differences are obscured by a large amount of intraclonal variation and sensitivity to the environment.     

Inadequacy of species-level designations for ecological studies of coastal migratory fishes

Synopsis The species is not always appropriate as a unit of measure when used in quantitative ecological studies. Analyses of fish trophic relationships in coastal areas indicate that, in many instances, more substantial ecological differences exist among life stages of a given species than among similar trophic units of different species. The use of a species in quantitative ecological studies can lead to problems of interpretation concerning the relationships of coastal fishes to complex habitats. Use of the species as a convenient unit of measure substitutes a basically taxonomic entity for more relevant life-history stages in ecological determinations. Niche breadth of a given species can be so extensive that quantitative determinations of significant ecological processes are difficult to make. Migratory coastal fishes undergo diverse ontogenetic trophic transformations. Without adequate recognition of the complex ecological stages that characterize such fishes, the oversimplification that characterizes many ecological studies in coastal areas will continue. This simplification, and the attendant overgeneralization that follows, tends to add to the continuing problem of unverified models and the inability to identify causal relationships in estuarine and coastal systems. Quantitative ecological studies would benefit from an approach that includes the use of identifiable, ontological trophic entities.     

dendroTools: R package for studying linear and nonlinear responses between tree-rings and daily environmental data

We introduce in this paper the dendroTools R package for studying the statistical relationships between tree-ring parameters and daily environmental data. The core function of the package is daily_response(), which works by sliding a moving window through daily environmental data and calculating statistical metrics with one or more tree ring proxies. Possible metrics are correlation coefficient, coefficient of determination and adjusted coefficient of determination. In addition to linear regression, it is possible to use a nonlinear artificial neural network with the Bayesian regularization training algorithm (brnn). dendroTools provides the opportunity to use daily climate data and robust nonlinear functions for the analysis of climate-growth relationships. Models should thus be better adapted to the real (continuous) growth of trees and should gain in predictive capabilities. The dendroTools R package is freely available in the CRAN repository. The functionality of the package is demonstrated on two examples, one using a mean vessel area (MVA) chronology and one a traditional tree-ring width (TRW).     

呼伦贝尔草原生物量变化及其与环境因子的关系

根据呼伦贝尔草原大范围草地生物量的调查和实验数据,分析了该地区草地生物量的动态变化规律及其与环境因子的关系。结果表明,沿着环境梯度,不同区域草地生物量差异显著,其变化与水分、温度变化关系不显著,与0～20cm土层的土壤有机碳含量呈正相关,而与土壤容重呈负相关。逐步多元回归表明,土壤有机碳是制约生物量变化的主要因素,可能是当地草地利用方式使土壤养分成为制约草地植物生长的限制因子,从而影响草地生物量。     

Weighted average regression and environmental calibration as a tool for quantifying climate-driven changes in vegetation

Aims Studies of the climatic responses of plant assemblages via vegetation-based environmental reconstructions by weighted averaging (WA) regression and calibration are a recent development in modern vegetation ecology. However, the performance of this technique for plot-based vegetation datasets has not been rigorously tested. We assess the estimation accuracy of the WA approach by comparing results, mainly the root mean square error of prediction (RMSEP) of WA regressions for six different vegetation datasets (total species, high-frequency species and low-frequency species as both abundance and incidence) each from two sites.     

Direct and plant trait‐mediated effects of the local environmental context on butterfly oviposition patterns

Variation in the intensity of plant–animal interactions over different spatial scales is widespread and might strongly influence fitness and trait selection in plants. Differences in traits among plant individuals have been shown to influence variation in interaction intensities within populations, while differences in environmental factors and community composition are shown to be important for variation over larger scales. However, little is still known about the relative importance of the local environmental context vs. plant traits for the outcome of interactions within plant populations. We investigated how oviposition by the seed‐predator butterfly Phengaris alcon on its host plant Gentiana pneumonanthe was related to host plant traits and to local environmental variation, as well as how oviposition patterns translated into effects on host plant fruit set. We considered the local environmental context in terms of height of the surrounding vegetation and abundance of the butterfly's second host, Myrmica ants. The probability of oviposition was higher in plants that were surrounded by lower vegetation, and both the probability of oviposition and the number of eggs increased in early‐flowering and tall plants with many flowers in the three study populations. Flowering phenology, shoot height and flower production were, in turn, related to higher surrounding vegetation. Myrmica abundance was correlated with vegetation height, but had no effect on oviposition patterns. Oviposition and subsequent seed predation by the caterpillars strongly reduced host plant fruit set. Our results show that plant–animal interactions are context‐dependent not only because the context influences the abundance or the behavior of the animal interactor, but also because it influences the expression of plant traits that affect the outcome of the interaction. The results also demonstrate that heterogeneity in environmental conditions at a very local scale can be important for the outcomes of interactions.     

土壤水分时空变异及其与环境因子的关系

土壤水分的时空变异是指在一定的景观内,不同时间、地点和土层的土壤水分特征存在明显的差异性和多样性。土壤水分时空变异是由多重尺度上的土地利用（植被）、气象（降雨）、地形、土壤、人为活动等诸因子综合作用的结果,但就其某一具体地区而言存在着重点尺度和主控因子,土壤水分时空变异的重点尺度与主控因子的时空关系因时间、空间和尺度而异。本文综述了土壤水分（尤其是黄土高原地区）的时空变异与其环境因子时空关系的研究进展,并提出了广眨开展多重时空尺度上土壤水分的时空变异与其诸因素的时空关系,研究土壤水分时空变异性的尺度转换规律,确定重点尺度及其相应的主控因子。     

Utilization of juvenile animal studies to determine the human effects and risks of environmental toxicants during postnatal developmental stages

BACKGROUND: Toxicology studies utilizing animals and in vitro cellular or tissue preparations have been used to study the toxic effects and mechanism of action of drugs and chemicals and to determine the effective and safe dose of drugs in humans and the risk of toxicity from chemical exposures. Testing in animals could be improved if animal dosing using the mg/kg basis was abandoned and drugs and chemicals were administered to compare the effects of pharmacokinetically and toxicokinetically equivalent serum levels in the animal model and human. Because alert physicians or epidemiology studies, not animal studies, have discovered most human teratogens and toxicities in children, animal studies play a minor role in discovering teratogens and agents that are deleterious to infants and children. In vitro studies play even a less important role, although they are helpful in describing the cellular or tissue effects of the drugs or chemicals and their mechanism of action. One cannot determine the magnitude of human risks from in vitro studies when they are the only source of toxicology data. METHODS: Toxicology studies on adult animals is carried out by pharmaceutical companies, chemical companies, the Food and Drug Administration (FDA), many laboratories at the National Institutes of Health, and scientific investigators in laboratories throughout the world. Although there is a vast amount of animal toxicology studies carried out on pregnant animals and adult animals, there is a paucity of animal studies utilizing newborn, infant, and juvenile animals. This deficiency is compounded by the fact that there are very few toxicology studies carried out in children. That is one reason why pregnant women and children are referred to as "therapeutic orphans." RESULTS: When animal studies are carried out with newborn and developing animals, the results demonstrate that generalizations are less applicable and less predictable than the toxicology studies in pregnant animals. Although many studies show that infants and developing animals may have difficulty in metabolizing drugs and are more vulnerable to the toxic effects of environmental chemicals, there are exceptions that indicate that infants and developing animals may be less vulnerable and more resilient to some drugs and chemicals. In other words, the generalization indicating that developing animals are always more sensitive to environmental toxicants is not valid. For animal toxicology studies to be useful, animal studies have to utilize modern concepts of pharmacokinetics and toxicokinetics, as well as "mechanism of action" (MOA) studies to determine whether animal data can be utilized for determining human risk. One example is the inability to determine carcinogenic risks in humans for some drugs and chemicals that produce tumors in rodents, When the oncogenesis is the result of peroxisome proliferation, a reaction that is of diminished importance in humans. CONCLUSIONS: Scientists can utilize animal studies to study the toxicokinetic and toxicodynamic aspects of drugs and environmental toxicants. But they have to be carried out with the most modern techniques and interpreted with the highest level of scholarship and objectivity. Threshold exposures, no-adverse-effect level (NOAEL) exposures, and toxic effects can be determined in animals, but have to be interpreted with caution when applying them to the human. Adult problems in growth, endocrine dysfunction, neurobehavioral abnormalities, and oncogenesis may be related to exposures to drugs, chemicals, and physical agents during development and may be fruitful areas for investigation. Maximum permissible exposures have to be based on data, not on generalizations that are applied to all drugs and chemicals. Epidemiology studies are still the best methodology for determining the human risk and the effects of environmental toxicants. Carrying out these focused studies in developing humans will be difficult. Animal studies may be our only alternative for answering many questions with regard to specific postnatal developmental vulnerabilities.     

Advances in two-dimensional transition metal dichalcogenides-based sensors for environmental,food, and biomedical analysis: A review

Transition metal dichalcogenides (TMDCs) are versatile two-dimensional (2D) nanomaterials used in biosensing applications due to their excellent physical and chemical properties. Due to biomaterial target properties, biosensors' most significant challenge is improving their sensitivity and stability. In environmental analysis, TMDCs have demonstrated exceptional pollutant detection and removal capabilities. Their high surface area, tunable electronic properties, and chemical reactivity make them ideal for sensors and adsorbents targeting various contaminants, including heavy metals, organic pollutants, and emerging contaminants. Furthermore, their unique electronic and optical properties enable sensitive detection techniques, enhancing our ability to monitor and mitigate environmental pollution. In the food analysis, TMDCs-based nanomaterials have shown remarkable potential in ensuring food safety and quality. These nanomaterials exhibit high specificity and sensitivity for detecting contaminants, pathogens, and adulterants in various food matrices. Their integration into sensor platforms enables rapid and on-site analysis, reducing the reliance on centralized laboratories and facilitating timely interventions in the food supply chain. In biomedical studies, TMDCs-based nanomaterials have demonstrated significant strides in diagnostic and therapeutic applications. Their biocompatibility, surface functionalization versatility, and photothermal properties have paved the way for novel disease detection, drug delivery, and targeted therapy approaches. Moreover, TMDCs-based nanomaterials have shown promise in imaging modalities, providing enhanced contrast and resolution for various medical imaging techniques. This article provides a comprehensive overview of 2D TMDCs-based biosensors, emphasizing the growing demand for advanced sensing technologies in environmental, food, and biomedical analysis.