Complex migration and breeding strategies in an elusive bird species illuminated by genetic and isotopic markers

Unlike the annual bi‐directional movements of over 200 bird species within the Palaearctic–Afrotropical region, irregular movements such as irruptive migration with a low degree of philopatry are reported for a variety of species depending on highly seasonal and unpredictable resources. These flexible movements allow for itinerant breeding – consecutive breeding attempts in two or more geographically different regions during the same annual reproductive cycle. In order to illuminate migratory and breeding strategies of the erratic wetland species Baillon's crake Zapornia pusilla across the W‐Palaearctic–Afrotropical region, we used a set of six DNA microsatellites as well as δ²H_f values of individuals sampled at one African and four European breeding sites. We investigated the degree of genetic population structure within and among different sites and assigned individuals’ feathers of unknown origin to their probable moulting (hence breeding) site using a likelihood approach. We found three genetic clusters, differentiating into one ‘European’ and two ‘African’ populations. Connectivity between the sampling sites was probable as genetic ‘African’ individuals were found in breeding conditions in Europe and vice versa. Likewise, assigned moulting locations based on δ²H isoscapes suggested trans‐continental movements as well as moulting and possibly breeding by the same individual both in African and European breeding grounds. Both isotopic and genetic data reveal the Baillon's crake pursue a complex migration and breeding strategy, allowing as well for irruptive movements and itinerant breeding across the W‐Palaearctic–Afrotropical region. However, a better knowledge about the species’ distribution as well as a more comprehensive data set, including samples from the southern and eastern boundaries of the distribution area would be necessary to improve the spatial resolution to the precision required to unambiguously infer migration directions and extent of exchange between African and European breeding grounds.     

Migration and dispersal patterns of bats and their influence on genetic structure

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Flyway structure in the circumpolar greater white‐fronted goose

Dispersal and migratory behavior are influential factors in determining how genetic diversity is distributed across the landscape. In migratory species, genetic structure can be promoted via several mechanisms including fidelity to distinct migratory routes. Particularly within North America, waterfowl management units have been delineated according to distinct longitudinal migratory flyways supported by banding data and other direct evidence. The greater white‐fronted goose (Anser albifrons) is a migratory waterfowl species with a largely circumpolar distribution consisting of up to six subspecies roughly corresponding to phenotypic variation. We examined the rangewide population genetic structure of greater white‐fronted geese using mtDNA control region sequence data and microsatellite loci from 23 locales across North America and Eurasia. We found significant differentiation in mtDNA between sampling locales with flyway delineation explaining a significant portion of the observed genetic variation (~12%). This is concordant with band recovery data which shows little interflyway or intercontinental movements. However, microsatellite loci revealed little genetic structure suggesting a panmictic population across most of the Arctic. As with many high‐latitude species, Beringia appears to have played a role in the diversification of this species. A common Beringian origin of North America and Asian populations and a recent divergence could at least partly explain the general lack of structure at nuclear markers. Further, our results do not provide strong support for the various taxonomic proposals for this species except for supporting the distinctness of two isolated breeding populations within Cook Inlet, Alaska (A. a. elgasi) and Greenland (A. a. flavirostris), consistent with their subspecies status.     

Migratory strategies of waterbirds shape the continental‐scale dispersal of aquatic organisms

Long distance dispersal (LDD) of propagules is an important determinant of population dynamics, community structuring and biodiversity distribution at landscape, and sometimes continental, scale. Although migratory animals are potential LDD vectors, migratory movement data have never been integrated in estimates of propagule dispersal distances and LDD probability. Here we integrated migratory movement data of two waterbird species (mallard and teal) over two continents (Europe and North America) and gut retention time of different propagules to build a simple mechanistic model of passive dispersal of aquatic plants and zooplankton. Distance and frequency of migratory movements differed both between waterbird species and continents, which in turn resulted in changes in the shapes of propagule dispersal curves. Dispersal distances and the frequency of LDD events (generated by migratory movements) were mainly determined by the disperser species and, to a lesser extent, by the continent. The gut retention time of propagules also exerted a significant effect, which was mediated by the propagule characteristics (e.g. seeds were dispersed farther than Artemia cysts). All estimated dispersal curves were skewed towards local‐scale dispersal and, although dispersal distances were lower than previous estimates based only on the vector flight speed, had fat tails produced by LDD events that ranged from 230 to 1209 km. Our results suggest that propagule dispersal curves are determined by the migratory strategy of the disperser species, the region (or flyway) through which the disperser population moves, and the propagule characteristics. Waterbirds in particular may frequently link wetlands separated by hundreds of kilometres, contributing to the maintenance of biodiversity and, given the large geographic scale of the dispersal events, to the readjustment of species distributions in the face of climate change.     

Panmixia on a continental scale in a widely distributed colonial waterbird

Many highly mobile species, such as migratory birds, can move and disperse over long distances, yet exhibit high levels of population genetic structuring. Although movement capabilities may enable dispersal, gene flow may be restricted by behavioural constraints such as philopatry. In the present study, we examined patterns of genetic differentiation across the range of a highly mobile, colonial waterbird. American white pelicans (Pelecanus erythrorhynchos) breed across continental North America and are currently experiencing a range expansion, especially on the eastern range limit. To assess patterns of genetic structuring, we sampled 333 individuals from 19 colonies across their North American range. The use of ten variable microsatellite markers revealed high levels of allelic richness with no population differentiation. Both Bayesian and frequentist approaches to examining genetic structuring revealed a single panmictic population. We found no evidence of genetic structuring across the Continental Divide or between migratory and non‐migratory colonies. The lack of any genetic structure across the range indicates that, unlike other waterbirds with similar life‐history characteristics, extensive gene flow and presumably low philopatry appear to preclude genetic differentiation. The lack of population genetic structure in American white pelicans provides an example of range‐wide panmixia, a rare phenomenon in any terrestrial species. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 583–592.     

Migratory patterns and connectivity of two North American grassland bird species

Effective management and conservation of migratory bird populations require knowledge and incorporation of their movement patterns and space use throughout the annual cycle. To investigate the little‐known migratory patterns of two grassland bird species, we deployed 180 light‐level geolocators on Grasshopper Sparrows (Ammodramus savannarum) and 29 Argos‐GPS tags on Eastern Meadowlarks (Sturnella magna) at Konza Prairie, Kansas, USA, and six US Department of Defense (DoD) installations distributed across the species' breeding ranges. We analyzed location data from 34 light‐level geolocators and five Argos‐GPS tags attached for 1 year to Grasshopper Sparrows and Eastern Meadowlarks, respectively. Grasshopper Sparrows were present on the breeding grounds from mid‐April through early October, substantially longer than previously estimated, and migrated on average ~2,500 km over ~30 days. Grasshopper Sparrows exhibited strong migratory connectivity only at a continental scale. The North American Great Lakes region likely serves as a migratory divide for Midwest and East Coast Grasshopper Sparrows; Midwest populations (Kansas, Wisconsin, and North Dakota; n = 13) largely wintered in Texas or Mexico, whereas East Coast populations (Maryland and Massachusetts, n = 20) wintered in the northern Caribbean or Florida. Our data from Eastern Meadowlarks provided evidence for a diversity of stationary and short‐ and long‐distance migration strategies. By providing the most extensive examination of the nonbreeding movement ecology for these two North American grassland bird species to date, we refine information gaps and provide key insight for their management and conservation.     

Postglacial northward expansion and genetic differentiation between migratory and sedentary populations of the broad‐tailed hummingbird (Selasphorus platycercus)

Unlike other migratory hummingbirds in North America, the broad‐tailed hummingbird (Selasphorus platycercus) exhibits both long‐distance migratory behaviour in the USA and sedentary behaviour in Mexico and Guatemala. We examined the evolution of migration linked to its northward expansion using a multiperspective approach. We analysed variation in morphology, mitochondrial and nuclear DNA, estimated migration rates between migratory and sedentary populations, compared divergence times with the occurrence of Quaternary climate events and constructed species distribution models to predict where migratory and sedentary populations resided during the Last Glacial Maximum (LGM) and Last Interglacial (LIG) events. Our results are consistent with a recent northward population expansion driven by migration from southern sedentary populations. Phylogeographical analyses and population genetics methods revealed that migratory populations in the USA and sedentary populations in Mexico of the platycercus subspecies form one admixed population, and that sedentary populations from southern Mexico and Guatemala (guatemalae) undertook independent evolutionary trajectories. Species distribution modelling revealed that the species is a niche tracker and that the climate conditions associated with modern obligate migrants in the USA were not present during the LIG, which provides indirect evidence for recent migratory behaviour in broad‐tailed hummingbirds on the temporal scale of glacial cycles. The finding that platycercus hummingbirds form one genetic population and that suitable habitat for migratory populations was observed in eastern Mexico during the LIG also suggests that the conservation of overwintering sites is crucial for obligate migratory populations currently facing climate change effects.     

A combined genetic-morphometric analysis unravels the complex biogeographical history of Polyommatus icarus and Polyommatus celina common blue butterflies

Widespread species have the potential to reveal large‐scale biogeographical patterns, as well as responses to environmental changes possibly unique to habitat generalists. This study presents a continental‐scale phylogeographical analysis of Polyommatus icarus, one of the most common Palaearctic butterflies, and the morphologically and ecologically similar Polyommatus celina, a recently discovered cryptic species. By combining data from mitochondrial [cytochrome c oxidase subunit I (COI)] and nuclear [internal transcribed spacer (ITS2)] molecular markers with geometric morphometrics, we document a complex phylogeographical history for the two species. Despite morphological similarities, the genetic divergence between these two species is high (more than 5% at COI) and they are not sister species. For the first time, we show that P. celina occurs not only in North Africa but also in Europe, where it inhabits several west Mediterranean islands, as well as large parts of Iberia, where it occurs in parapatry with P. icarus. The two species appear to completely exclude each other on islands, but we provide morphological and molecular evidence that introgression occurred in the Iberian Peninsula. We discovered strongly diverged lineages that seem to represent relict populations produced by past range expansions and contractions: Crete and Iberian isolates for P. icarus, Balearics–Sardinia and Sicily–Lipari for P. celina. This study shows that a combined genetic‐morphometric approach can shed light on cryptic diversity while providing the necessary resolution to reconstruct a fine‐scale phylogeographical history of species at both spatial and temporal levels.     

Geography is more important than host plant use for the population genetic structure of a generalist insect herbivore

Population divergence can occur due to mechanisms associated with geographic isolation and/or due to selection associated with different ecological niches. Much of the evidence for selection‐driven speciation has come from studies of specialist insect herbivores that use different host plant species; however, the influence of host plant use on population divergence of generalist herbivores remains poorly understood. We tested how diet breadth, host plant species and geographic distance influence population divergence of the fall webworm (Hyphantria cunea; FW). FW is a broadly distributed, extreme generalist herbivore consisting of two morphotypes that have been argued to represent two different species: black‐headed and red‐headed. We characterized the differentiation of FW populations at two geographic scales. We first analysed the influence of host plant and geographic distance on genetic divergence across a broad continental scale for both colour types. We further analysed the influence of host plant, diet breadth and geographic distance on divergence at a finer geographic scale focusing on red‐headed FW in Colorado. We found clear genetic and morphological distinction between red‐ and black‐headed FW, and Colorado FW formed a genetic cluster distinct from other locations. Although both geographic distance and host plant use were correlated with genetic distance, geographic distance accounted for up to 3× more variation in genetic distance than did host plant use. As a rare study investigating the genetic structure of a widespread generalist herbivore over a broad geographic range (up to 3,000 km), our study supports a strong role for geographic isolation in divergence in this system.     

Novel statistical methods for integrating genetic and stable isotope data to infer individual‐level migratory connectivity

Methods for determining patterns of migratory connectivity in animal ecology have historically been limited due to logistical challenges. Recent progress in studying migratory bird connectivity has been made using genetic and stable‐isotope markers to assign migratory individuals to their breeding grounds. Here, we present a novel Bayesian approach to jointly leverage genetic and isotopic markers and we test its utility on two migratory passerine bird species. Our approach represents a principled model‐based combination of genetic and isotope data from samples collected on the breeding grounds and is able to achieve levels of assignment accuracy that exceed those of either method alone. When applied at large scale the method can reveal specific migratory connectivity patterns. In Wilson's warblers (Wilsonia pusilla), we detect a subgroup of birds wintering in Baja that uniquely migrate preferentially from the coastal Pacific Northwest. Our approach is implemented in a way that is easily extended to accommodate additional sources of information (e.g. bi‐allelic markers, species distribution models, etc.) or adapted to other species or assignment problems.     

Habitat predictors of genetic diversity for two sympatric wetland‐breeding amphibian species

Population genetic diversity is widely accepted as important to the conservation and management of wildlife. However, habitat features may differentially affect evolutionary processes that facilitate population genetic diversity among sympatric species. We measured genetic diversity for two pond‐breeding amphibian species (Dwarf salamanders, Eurycea quadridigitata; and Southern Leopard frogs, Lithobates sphenocephalus) to understand how habitat characteristics and spatial scale affect genetic diversity across a landscape. Samples were collected from wetlands on a longleaf pine reserve in Georgia. We genotyped microsatellite loci for both species to assess population structures and determine which habitat features were most closely associated with observed heterozygosity and rarefied allelic richness. Both species exhibited significant population genetic structure; however, structure in Southern Leopard frogs was driven primarily by one outlier site. Dwarf salamander allelic richness was greater at sites with less surrounding road area within 0.5 km and more wetland area within 1.0 and 2.5 km, and heterozygosity was greater at sites with more wetland area within 0.5 km. In contrast, neither measure of Southern Leopard frog genetic diversity was associated with any habitat features at any scale we evaluated. Genetic diversity in the Dwarf salamander was strongly associated with land cover variables up to 2.5 km away from breeding wetlands, and/or results suggest that minimizing roads in wetland buffers may be beneficial to the maintenance of population genetic diversity. This study suggests that patterns of genetic differentiation and genetic diversity have associations with different habitat features across different spatial scales for two syntopic pond‐breeding amphibian species.     

Flies on vacation: evidence for the migration of Australian Syrphidae (Diptera)

1. Hover flies (Syrphidae: Diptera) are a cosmopolitan group of insects that provide important ecosystem services including pollination and pest control. The seasonal migration of hover flies is probably best known in Europe, but it remains unstudied in many other parts of the world. 2. Australia is believed to be home to around 160 hover fly species, some of which are common in urban and agricultural environments. The current evidence for hover fly migration in Australia is scarce and anecdotal, yet migration may be critical to the success of pollination and the biological control of aphids. 3. In this study, species occurrence records from an online biodiversity database (Atlas of Living Australia) were used to look for evidence of migratory behaviours in all Australian hover flies with more than 200 occurrence records. 4. Four of the 10 species displayed seasonal changes in their distribution consistent with migration, including Australia's two most abundant species: Melangyna viridiceps and Simosyrphus grandicornis. This work is an important first step in understanding the prevalence of migration in Australian hover flies. However, confirmation of our findings requires additional evidence to rule out other plausible explanations for the observed patterns. 5. Based on changes in summer and winter latitudinal distribution, it is estimated that some Australian hover flies may make annual migrations of 400–1800 km. 6. This work suggests that the management of beneficial insects requires consideration of factors at both local and continental scales, as landscape use changes may have an impact on ecosystem services delivered hundreds of kilometres away.     

Restricted dispersal in a continuously distributed marine species: common bottlenose dolphins Tursiops truncatus in coastal waters of the western North Atlantic

The marine environment provides an opportunity to examine population structure in species with high dispersal capabilities and often no obvious barriers to genetic exchange. In coastal waters of the western North Atlantic, common bottlenose dolphins, Tursiops truncatus, are a highly mobile species with a continuous distribution from New York to Florida. We examine if the highly mobile nature coupled with no obvious geographic barriers to movement in this region result in a large panmictic population. Mitochondrial control region sequences and 18 microsatellite loci indicate dolphins are partitioning the habitat both latitudinally and longitudinally. A minimum of five genetically differentiated populations were identified among 404 samples collected in the range of New Jersey to northern Florida using both genetic marker types, some inhabiting nearshore coastal waters and others utilizing inshore estuarine waters. The genetic results reject the hypothesis of a single stock of coastal bottlenose dolphins put forth after the 1987–1988 epizootic that caused a large‐scale die‐off of dolphins and suggest instead the disease vector was transferred from one population to the next as a result of seasonal migratory movements of some populations. These coastal Atlantic populations also differ significantly from bottlenose dolphin samples collected in coastal waters of the northern Gulf of Mexico, implying a long‐term barrier to movement between the two basins.     

Migration of wild and captive‐bred Little Bustards Tetrax tetrax: releasing birds from Spain threatens attempts to conserve declining French populations

Populations of the Little Bustard Tetrax tetrax in the farmlands of Europe have declined greatly over the last century. In Western Europe, France now holds the only remaining migratory population, which currently numbers fewer than 300 displaying males. However, the movements of these birds are virtually unknown, in spite of the important implications of this information for the conservation of this species. We identified migratory movements and overwintering areas of French migratory populations, using wild individuals fitted with satellite or radio‐transmitters. Little Bustards completed their migration journey over a relatively short time period (2–5 days), with nocturnal migration flights of 400–600 km per night. All birds overwintered in Iberia. In addition, we tested the consequences of captive rearing on migratory movements. French wild adults and French captive‐bred juveniles behaved similarly with regard to migration, suggesting that hand‐raising does not alter migratory movements. However, birds originating from eggs collected in Spain and reared in western France did not migrate, suggesting a genetic component to migratory behaviour. These results therefore suggest that a conservation strategy involving the release in France of birds hatched from eggs collected in Spain may imperil the expression of migratory movements of the French population. More generally, to maintain the integrity of native populations, the introduced individuals should mimic their migratory movements and behaviour.     

Multispecies genetic structure and hybridization in the Betula genus across Eurasia

Boreal and cool temperate forests are the major land cover of northern Eurasia, and information about continental‐scale genetic structure and past demographic history of forest species is important from an evolutionary perspective and has conservation implications. However, although many population genetic studies of forest tree species have been conducted in Europe or Eastern Asia, continental‐scale genetic structure and past demographic history remain poorly known. Here, we focus on the birch genus Betula, which is commonly distributed in boreal and cool temperate forests, and examine 129 populations of two tetraploid and four diploid species collected from Iceland to Japan. All individuals were genotyped at seven to 18 nuclear simple sequence repeats (nSSRs). Pairwise among the six species ranged from 0.285 to 0.903, and genetic differentiation among them was clear. structure analysis suggested that Betula pubescens is an allotetraploid and one of the parental species was Betula pendula. In both species pairs of B. pendula and B. plathyphylla, and B. pubescens and B. ermanii, genetic diversity was highest in central Siberia. A hybrid zone was detected around Lake Baikal for eastern and western species pairs regardless of ploidy level. Approximate Bayesian computation suggested that the divergence of B. pendula and B. platyphylla occurred around the beginning of the last ice age (36 300 years BP, 95% CI: 15 330–92 700) and hybridization between them was inferred to have occurred after the last glacial maximum (1614 years BP, 95% CI: 561–4710), with B. pendula providing a higher contribution to hybrids.     

Low genetic differentiation among reed warbler Acrocephalus scirpaceus populations across Europe

Migratory birds generally have higher dispersal propensity than resident species and are thus expected to show less genetic differentiation. On the other hand, specific migration patterns may promote genetic structure, such as in situations where migratory divides impede random mixing of individuals. Here we investigated population genetic structure and gene flow patterns in a polytypic passerine, the reed warbler Acrocephalus scirpaceus which shows a migratory divide in central Europe. Using ten polymorphic microsatellite loci and extensive sampling we found low but significant overall genetic differentiation (F_ST=0.013, G’_ST=0.078, D=0.063). Hierarchical F‐statistics and barrier analyses showed low but significant genetic differentiation of Iberian populations, and also slight genetic differences across the migratory divide and between subspecies (A. s. scirpaceus and A. s. fuscus). Three individual‐based Bayesian methods, however, inferred a single genetic unit. Our study thus found low levels of genetic differentiation among reed warbler populations but this genetic differentiation was not pronounced enough to detect a clear population structure using the microsatellite data and no prior information on geographic location of the sampled individuals. This result indicates high levels of gene flow and suggests a possibly recent divergence of European populations after a rapid range expansion. Further studies are necessary to assess divergence times and to reveal the evolutionary history of the reed warbler populations.     

Noctuid migration in Texas within the nocturnal aeroecological boundary layer

Long-distance migration of adult corn earworm moths (Helicoverpazea), and several other noctuid moth species, facilitates seasonalexpansion of pest populations and consequent increased infestationsof agricultural crops on a continental scale in North America.Long-term field studies of population dynamics and migratoryflights of H. zea and fall armyworm (Spodoptera frugiperda)in the United States were evaluated using X-band radar observationsand profiles of atmospheric conditions. These studies identifiedcharacteristic patterns of migratory flight that are largelyassociated with vertical profiles of temperature and wind speed.Collective patterns of moth migrations were generally highlycorrelated with wind headings, but often at a significant angulardeviation. Preliminary analyses are presented between moth distributionsin the aerosphere estimated from discrete moth counts usingX-band radar and bulk reflectivity data from NEXRAD Dopplerradar. Identification of associations between atmospheric factorsand noctuid population dynamics and migratory flights will improvethe ability to predict infestations by pest species throughouttheir broad seasonal range expansion.     

Genetic variability in migratory and endemic island songbirds (genus Vireo): A comparative assessment using molecular and morphological traits

Low genetic variation is thought to increase the risk of extinction in island species; however, these species can differ both in terms of endemism and gene flow. In a previous study, the endemic species of Puerto Rico (V. latimeri) and Jamaica (V. modestus and V. osburni) were shown to have less genetic variability than a continental relative, V. griseus. In this study, a migratory island species, V. altiloquus, is analyzed together with the endemics in order to (1) compare levels of genetic variation in migratory and endemic island species, and (2) assess this variation using both molecular markers and morphological traits. Each island species is also compared to a continental relative (V. griseus for the endemic species, and V. olivaceus for the migratory species). Variability in random amplified polymorphic DNA markers was significantly lower in the endemic species than in either migratory population. All island populations had significantly lower levels of variation than their respective continental relatives, but with significantly greater reduction in the endemic species. In contrast, the morphological measures revealed only two cases with a significantly lower CV in an endemic species compared to V. altiloquus or V. griseus. All others exhibited either no differences in CV or greater levels in the island populations. While the molecular results generally correspond to predictions of lower variability in endemic vs. migratory island species and island vs. continental species, the morphological comparisons do not, and therefore may not be useful for quick, field-based assessments of underlying genetic variability. This revised version was published online in July 2006 with corrections to the Cover Date.     

Extreme genetic similarity does not predict non‐breeding distribution of two closely related warblers

Detailed knowledge of migratory connectivity can facilitate effective conservation of Neotropical migrants by helping biologists understand where and when populations may be most limited. We studied the migratory behavior and non‐breeding distribution of two closely related species of conservation concern, the Golden‐winged Warbler (Vermivora chrysoptera) and Blue‐winged Warbler (Vermivora cyanoptera). Although both species have undergone dynamic range shifts and population changes attributed to habitat loss and social interactions promoting competition and hybridization, full life‐cycle conservation planning has been limited by a lack of information about their non‐breeding ecology. Because recent work has demonstrated that the two species are nearly identical genetically, we predicted that individuals from a single breeding population would have similar migratory timing and overwintering locations. In 2015, we placed light‐level geolocators on 25 males of both species and hybrids in an area of breeding sympatry at the Fort Drum Military Installation in Jefferson and Lewis counties, New York. Despite extreme genetic similarity, non‐breeding locations and duration of migration differed among genotypes. Golden‐winged Warblers (N = 2) overwintered > 1900 km southeast of the nearest Blue‐winged Warbler (N = 3) and spent nearly twice as many days in migration; hybrids (N = 2) had intermediate wintering distributions and migratory timing. Spring migration departure dates were staggered based on distance from the breeding area, and all birds arrived at the breeding site within 8 days of each other. Our results show that Golden‐winged Warblers and Blue‐winged Warblers in our study area retain species‐specific non‐breeding locations despite extreme genetic similarity, and suggest that non‐breeding locations and migratory timing vary along a genetic gradient. If the migratory period is limiting for these species, our results also suggest that Golden‐winged Warblers in our study population may be more vulnerable to population decline than Blue‐winged Warblers because they spend almost twice as many days migrating.     

Local adaptation and oceanographic connectivity patterns explain genetic differentiation of a marine diatom across the North Sea–Baltic Sea salinity gradient

Drivers of population genetic structure are still poorly understood in marine micro‐organisms. We exploited the North Sea–Baltic Sea transition for investigating the seascape genetics of a marine diatom, Skeletonema marinoi. Eight polymorphic microsatellite loci were analysed in 354 individuals from ten locations to analyse population structure of the species along a 1500‐km‐long salinity gradient ranging from 3 to 30 psu. To test for salinity adaptation, salinity reaction norms were determined for sets of strains originating from three different salinity regimes of the gradient. Modelled oceanographic connectivity was compared to directional relative migration by correlation analyses to examine oceanographic drivers. Population genetic analyses showed distinct genetic divergence of a low‐salinity Baltic Sea population and a high‐salinity North Sea population, coinciding with the most evident physical dispersal barrier in the area, the Danish Straits. Baltic Sea populations displayed reduced genetic diversity compared to North Sea populations. Growth optima of low salinity isolates were significantly lower than those of strains from higher native salinities, indicating local salinity adaptation. Although the North Sea–Baltic Sea transition was identified as a barrier to gene flow, migration between Baltic Sea and North Sea populations occurred. However, the presence of differentiated neutral markers on each side of the transition zone suggests that migrants are maladapted. It is concluded that local salinity adaptation, supported by oceanographic connectivity patterns creating an asymmetric migration pattern between the Baltic Sea and the North Sea, determines genetic differentiation patterns in the transition zone.