Analytical and numerical solutions of the potential and electric field generated by different electrode arrays in a tumor tissue under electrotherapy

Background

During the cardiac cycle, the heart normally produces repeatable physiological sounds. However, under pathologic conditions, such as with heart valve stenosis or a ventricular septal defect, blood flow turbulence leads to the production of additional sounds, called murmurs. Murmurs are random in nature, while the underlying heart sounds are not (being deterministic).

Innovation

We show that a new analytical technique, which we call Digital Subtraction Phonocardiography (DSP), can be used to separate the random murmur component of the phonocardiogram from the underlying deterministic heart sounds.

Methods

We digitally recorded the phonocardiogram from the anterior chest wall in 60 infants and adults using a high-speed USB interface and the program Gold Wave http://www.goldwave.com. The recordings included individuals with cardiac structural disease as well as recordings from normal individuals and from individuals with innocent heart murmurs. Digital Subtraction Analysis of the signal was performed using a custom computer program called Murmurgram. In essence, this program subtracts the recorded sound from two adjacent cardiac cycles to produce a difference signal, herein called a "murmurgram". Other software used included Spectrogram (Version 16), GoldWave (Version 5.55) as well as custom MATLAB code.

Results

Our preliminary data is presented as a series of eight cases. These cases show how advanced signal processing techniques can be used to separate heart sounds from murmurs. Note that these results are preliminary in that normal ranges for obtained test results have not yet been established.

Conclusions

Cardiac murmurs can be separated from underlying deterministic heart sounds using DSP. DSP has the potential to become a reliable and economical new diagnostic approach to screening for structural heart disease. However, DSP must be further evaluated in a large series of patients with well-characterized pathology to determine its clinical potential.     

Quantitative comparison of stability of ANAMMOX process in different reactor configurations

A new stability evaluating system for ANAMMOX comprising three instability indices i.e. coefficient of variation ratio, coefficient of range ratio and coefficient of regression function derivative was established. Three lab-scale ANAMMOX reactors viz upflow anaerobic sludge blanket (UASB) reactor, upflow stationary fixed film (USFF) reactor and anaerobic sequencing batch reactor (ASBR) were compared for their stability based on the established criterion against the hydraulic and substrate concentration shocks. The results showed that all ANAMMOX reactors under investigation were more tolerant to the hydraulic shock than substrate concentration shock. The UASB reactor was the most stable reactor configuration towards substrate concentration shock, followed by the USFF reactor and ASBR. However, the ASBR proved the most tolerant to hydraulic shock, followed by the UASB reactor and USFF reactor. In terms of stability, UASB reactor was more suitable configuration compared with USFF reactor. The instability indices proved to be effective and explicit for the evaluation of ANAMMOX systems.     

Application of electric field fusion in plant tissue culture

Manipulation of protoplasts via fusion and organelle transfer is expected to be facilitated by the technique known as electric field fusion. Construction and use are described of three flow-through fusion chambers that incorporate flat-sided electrodes in a manner that makes fusion of protoplasts possible througout the chambers' total volume (4, 49 or 110 μl) under constant electrical, chemical and physical conditions. Brassica napus L. protoplasts subjected to fusogenic conditions, that is, application of voltages that induce reversible membrane breakdown, were capable not only of survival but also of cell wall resynthesis, cell division and subsequent growth and development. Intraspecific ( B. napus × B. napus ), interspecific. ( B. napus × B. campestris L.) and intergeneric ( B. napus × Primula acaulis L.) fusion and engulfment events were followed by using on the one hand autofluorescence and fluorescein isothiocynate as respective markers or on the other hand autofluorescence and vacuolar anthocyanin ( Primula ). Properties and merits of flat-sided versus cylindrical electrodes are discussed.     

Analytical comparison of absolute quantification strategies to investigate the insulin signaling pathway in fat cells

So far, mass spectrometry-based targeted proteomics is the most sensitive approach to answer and address specific biological questions in an accurate and quantitative fashion. However, the data analysis design used for such quantification varies in the field leading to discrepancies in the reported values. In this study, different quantification strategies based on calibration curves were evaluated and compared. The best accuracy and coefficient of variation was achieved by ratio to ratio calibration curves. We applied the ratio to ratio quantification approach to analyze very low abundant insulin signaling proteins such as PIK3RA (0.10–0.93 fmol/μg), AKT1 (0.1–0.39 fmol/μg), and the insulin receptor (0.22–2.62 fmol/μg) in a fat cell model and demonstrated the adaptation of this pathway at different states of insulin sensitivity.     

A comparison of different culture media for the membrane filter quantification of Aeromonas in water

A comparative assessment of culture media for the membrane filter enumeration of Aeromonas spp. in water was performed, testing the effects of different incubation conditions (aerobic and anaerobic), temperatures (30 and 37 degrees C) and times (24 and 48 h). Different water samples seeded with test suspensions of Aeromonas spp., fecal material or raw sewage were examined. Results indicate clearly that plates should be incubated aerobically at 30 degrees C for 24 h. If the bacterial contamination is likely to be low, the use of most sensitive culture media, such as SAA, mA, ADA or PADE Agar, is recommended. By contrast, samples with an expected high level of background microbial flora should be analysed through more selective media, such as MIX Agar. However, the low selectivity of all media tested and the high likelihood of false negatives based upon the macroscopic examination of colonies means that further research directed to the development of more efficient media is needed.     

Constituent-specific material behavior of soft biological tissue: experimental quantification and numerical identification for lung parenchyma

Biomechanics and Modeling in Mechanobiology - In this study, we present a method to experimentally quantify and numerically identify the constituent-specific material behavior of soft biological...     

Analytical strategies for the global quantification of intact proteins

The quantification of intact proteins is a relatively recent development in proteomics. In eukaryotic organisms, proteins are present as multiple isoforms as the result of variations in genetic code, alternative splicing, post-translational modification and other processing events. Understanding the identities and biological functions of these isoforms and how their concentrations vary across different states is the central goal of proteomics. To date, the bulk of proteomics research utilizes a "bottom-up" approach, digesting proteins into their more manageable constitutive peptides, but sacrificing information about the specific isoform and combinations of post-translational modifications present on the protein. Very specific strategies for protein quantification such as the enzyme-linked immunosorbent assay and Western blot are commonplace in laboratories and clinics, but impractical for the study of global biological changes. Herein, we describe strategies for the quantification of intact proteins, their distinct advantages, and challenges to their employment. Techniques contained in this review include the more traditional and widely employed methodology of differential gel electrophoresis and more recently developed mass spectrometry-based techniques including metabolic labeling, chemical labeling, and label-free methodologies.     

Inter-laboratory comparison of numerical dosimetry for human exposure to 60 Hz electric and magnetic fields

In recent years, with the availability of high resolution models of the human body, numerical computations of induced electric fields and currents have been made in more than one laboratory for various exposure conditions. Despite the verification of computational methods, questions are often asked about the reliability of these data. In this paper, computational results from two laboratories that presented data in compatible formats are compared, supplemented with additional data from the third laboratory. Two exposures to uniform fields at 60 Hz are evaluated. The human body models used in the computations are different and so are the computation al methods and codes. There are some differences in the conductivity values used for some of the tissues, as well. The results of the comparison confirm that these data are reliable, as the overall agreement is reasonably good and the differences can be rationally explained. This comparison also underscores the importance of accurate data on the dielectric properties of tissues.     

Analytical and numerical tools for diffusion-based movement models

I present a general diffusion-based modeling framework for the analysis of animal movements in heterogeneous landscapes, including terms representing advection, mortality, and edge-mediated behavior. I use adjoint operator theory to develop mathematical machinery for the assessment of a number of biologically relevant quantities, such as occupancy times, hitting probabilities, quasi-stationary distributions, the backwards equation, and conditional probability densities. I derive finite-element approximations, which can be used to obtain numerical solutions in domains which do not allow for an analytical treatment. As an example, I model the movements of the butterfly Melitaea cinxia in an island consisting of a set of habitat patches and the intervening matrix habitat. I illustrate the behavior of the model and the mathematical theory by examining the effects of a hypothetical movement barrier and advection caused by prevailing wind conditions.     

Characteristic radiation of nitrogen under subnanosecond breakdown in a highly nonuniform electric field near the positive-polarity electrode

Results are presented from experimental studies of elevated-pressure diffuse discharge in a highly nonuniform electric field. It is shown that, in discharges in nitrogen and air, the characteristic radiation (the K-line of nitrogen) is generated at the positive polarity of the electrode with a small curvature radius. X-ray bremsstrahlung from the anode was detected in a discharge in atmospheric-pressure air at a 12-kV amplitude of the incident voltage pulse.     

The local electric field within phospholipid membranes modulates the charge transfer reactions in reaction centres

Three different cholesterol derivatives and phloretin, known to affect the local electric field in phospholipid membranes, have been introduced into Rhodobacter sphaeroides reaction centre-containing phospholipid liposomes. We show that cholesterol and 6-ketocholestanol significantly slow down the interquinone first electron transfer (∼ 10 times), whereas phloretin and 5-cholesten-3β-ol-7-one leave the kinetics essentially unchanged. Interestingly, the two former compounds have been shown to increase the dipole potential, whereas the two latter decrease it. We also measured in isolated RCs the rates of the electron and proton transfers at the first flash. Over the pH range 7-10.5 both reactions display biphasic behaviors with nearly superimposable rates and amplitudes, suggesting that the gating process limiting the first electron transfer is indeed the coupled proton entry. We therefore interpret the effects of cholesterol and 6-ketocholestanol as due to dipole concentration producing an increased free energy barrier for protons to enter the protein perpendicular to the membrane. We also report for the first time in R. sphaeroides RCs, at room temperature, a biphasicity of the P⁺Q_A⁻ charge recombination, induced by the presence of cholesterol derivatives in proteoliposomes. We propose that these molecules decrease the equilibration time between two RC conformations, therefore revealing their presence.     

A fluorometric approach to local electric field measurements in a voltage-gated ion channel

Site-specific electrostatic measurements have been limited to soluble proteins purified for in vitro spectroscopic characterization or proteins of known structure; however, comparable measurements have not been made for functional membrane bound proteins. Here, using an electrochromic fluorophore, we describe a method to monitor localized electric field changes in a voltage-gated potassium channel. By coupling the novel probe Di-1-ANEPIA to cysteines in Shaker and tracking field-induced optical changes, in vivo electrostatic measurements were recorded with submillisecond resolution. This technique reports dynamic changes in the electric field during the gating process and elucidates the electric field profile within Shaker. The extension of this method to other membrane bound proteins, including transporters, will yield insight into the role of electrical forces on protein function.     

Effect of electrode configurations on phytoremediation efficiency and environmental risk

Plant and Soil - Some experiments were designed to evaluate the influences of field directions and voltages on the remediation efficiency and environmental risk during the chelator assisted...     

60-Hz electric field alters the steroidogenic response of rat adrenal tissue, in vitro

Exposure to a 60-Hz electric field at 10 kV/m but not at 5 kV/m, 100 kV/m or 1000 kV/m caused a highly significant, threefold elevation in the steroidogenic response of rat adrenal cortical tissue after the administration of 10 mU of adrenocorticotrophic hormone (ACTH) under in vitro, superfusion conditions. A 60-Hz electric field can directly influence the function of mammalian tissue in the absence of central-nervous-system mediation.     

An LED-based fluorometer for chlorophyll quantification in the laboratory and in the field

The chlorophyll content is an important experimental parameter in agronomy and plant biology research. In this report, we explore the feasibility of determining total concentration of extracts containing chlorophyll a and chlorophyll b by chlorophyll fluorescence. We found that an excitation at 457?nm results in the same integrated fluorescence emission for a molecule of chlorophyll a and a molecule of chlorophyll b. The fluorescence yield induced by 457?nm is therefore proportional to total molar chlorophyll concentration. Based on this observation, we designed an instrument to determine total chlorophyll concentrations. A single light emitting diode (LED) is used to excite chlorophyll extracts. After passing through a long-pass filter, the fluorescence emission is assessed by a photodiode. We demonstrate that this instrument facilitates the determination of total chlorophyll concentrations. We further extended the functionality of the instrument by including LEDs emitting at 435 and 470?nm wavelengths, thereby preferentially exciting chlorophyll a and chlorophyll b. This instrument can be used to determine chlorophyll a and chlorophyll b concentrations in a variety of organisms containing different ratios of chlorophylls. Monte-Carlo simulations are in agreement with experimental data such that a precise determination of chlorophyll concentrations in carotenoid-containing biological samples containing a concentration of less than 5?nmol/mL total chlorophyll can be achieved.     

Model development and numerical simulation of electric-stimulus-responsive hydrogels subject to an externally applied electric field

Based on a multi-phasic mixture theory with consideration of ionic diffusion and convection, a multi-physic model, called the multi-effect-coupling electric-stimulus (MECe) model, is developed for simulation of responsive behavior of the electric-sensitive hydrogels when they are immersed into a bathing solution subject to an externally applied electric field. In the developed model, with chemo-electro-mechanical coupling effects, the convection-diffusion equations for concentration distribution of diffusive ions incorporate the influence of electric potential. The electroneutrality condition is replaced by the Poisson equation for distribution of electric potential. The steady and transient analyses of hydrogel deformation are easily carried out by the continuity and momentum equations of the mixture phase. Further, the computational domain of the present model covers both the hydrogel and the surrounding solution. In order to solve the present mathematical model consisting of multi-field coupled nonlinear partial differential governing equations, a hierarchical iteration technique is proposed and a meshless Hermite-Cloud method (HCM) is employed. The steady-state simulation of the electric-stimulus responsive hydrogel is numerically conducted when it is subjected to an externally applied electric field. The hydrogel deformation and the ionic concentrations as well as electric potentials of both the hydrogel and external solution are investigated. The parameter influences on the swelling behaviors of the hydrogel are also discussed in detail. The simulating results are in good agreement with the experimental data and they validate the presently developed model.     

Spectroscopic measurements and numerical simulations of the electrode plasma of an electrode microwave discharge in hydrogen

The structure of an electrode microwave discharge in hydrogen at pressures of 1–8 torr and incident powers of 20–100 W is studied using optical spectroscopy. A two-dimensional computer code is developed for self-consistently simulating a self-sustained steady-sate electrode microwave discharge ignited at the end of the inner conductor of a coaxial line. The model is based on simultaneously solving time-dependent Maxwell’s equations, the balance equations for charged particles, and a homogeneous Boltzmann equation. The numerical results referring to the electrode region of the discharge are in fair agreement with the experimental data. This confirms the early suggestion (inferred from experimental data) of the combined “self-sustained-non-self-sustained” character of the electrode discharge. It is shown that the self-sustained discharge domain is located in the electrode region of the discharge.     

Analytical and numerical construction of equivalent cables

The mathematical complexity experienced when applying cable theory to arbitrarily branched dendrites has lead to the development of a simple representation of any branched dendrite called the equivalent cable. The equivalent cable is an unbranched model of a dendrite and a one-to-one mapping of potentials and currents on the branched model to those on the unbranched model, and vice versa. The piecewise uniform cable, with a symmetrised tri-diagonal system matrix, is shown to represent the canonical form for an equivalent cable. Through a novel application of the Laplace transform it is demonstrated that an arbitrary branched model of a dendrite can be transformed to the canonical form of an equivalent cable. The characteristic properties of the equivalent cable are extracted from the matrix for the transformed branched model. The one-to-one mapping follows automatically from the construction of the equivalent cable. The equivalent cable is used to provide a new procedure for characterising the location of synaptic contacts on spinal interneurons.