系统生物学研究及其在医学中的应用

目前,系统生物学研究已初显端倪。生物学正从分子生物学走向系统生物学,由精细的分解研究转向系统的整体研究,由还原论的研究方法过渡到系统论的研究方法。简要论述了系统生物学的产生背景、结构和内容、研究思路和方法、与医学的关系等,重点介绍系统生物学的内容和研究方法,以及在疾病治疗和药物开发中的研究进展。     

Conceptual tensions between theory and program: The chromosome theory and the Mendelian research program

Laudan's thesis that conceptual problem solving is at least as important as empirical problem solving in scientific research is given support by a study of the relation between the chromosome theory and the Mendelian research program. It will be shown that there existed a conceptual tension between the chromosome theory and the Mendelian program. This tension was to be resolved by changing the constraints of the Mendelian program. The relation between the chromosome theory and the Mendelian program is shown to be a good illustration of the influence of science itself on the rational standards governing scientific development.I thank A. A. Derksen, N. Roll-Hansen and the anonymous referees for their helpful comments.     

Psychopathology or adaptation? Genetic and evolutionary perspectives on individual differences and psychopathology

A greater understanding of psychopathology will be found in the integration of genetic and evolutionary perspectives on adaptation and function. Evolutionary theory proposes that adaptive traits are reproduced more successfully than maladaptive ones. However, some traits, while contributing to fitness in the ancestral environment, may contribute to fitness no longer. This is known as mismatch theory. Evolutionarily informed research into various "pathologies" has yielded interesting results, some based on this theory. This paper serves to distinguish between genetic and evolutionary perspectives on psychopathology as well as to examine some recent research on the selective forces that may be implicated in psychopathy, anorexic behavior, and ADHD. We suggest that research into psychopathy in general would benefit from an evolutionary perspective and an examination of the assumptions behind past research.     

Landscape ecology development supported by geospatial technologies: A review

Numerous technologies have contributed to the recent development of landscape ecology, especially the geospatial technological advances constitute a revolution in landscape ecology. Extensive applications of geospatial technologies, such as fractal theory, geographic information systems (GIS) and remote sensing (RS) in landscape ecology research, suggest the necessity of such a review of research progress in this field. In this study, a brief introduction to fractal theory, GIS and RS and how they were applied in landscape ecology were provided first. Then, the current state-of-the-art was summarized and analyzed as reference for further promoting the development of landscape ecology science and its applications. Finally, opportunities and challenges of landscape ecology applications using these new technologies were discussed and concluded for future research. It was contended that a combination and integration of these technologies can substantially advance the study of landscape ecology for data acquisition, process modeling, scale transformation, result analysis and visualization. However, as no theoretical framework and application cases of applying an integration of fractal theory, GIS and RS techniques to landscape ecology research have been established, further studies are still much needed.     

医学科研资源管理中的博弈问题探讨

医学科研资源管理是医学科研的调控手段,涉及医学科研团队和医科管理部门之间的利益损益。基于利益差异的行为冲突就成为了制约医学科研顺利进行的主要因素之一。博弈理论的思想和方法适用于分析存在的互动关系的行为人决策过程及其规律,为解释医学科研进程中的利益冲突、分析医科管理缺陷的形成机理提供了很好的思路和方法。     

The search for a macroevolutionary theory in German paleontology

Summary Six schools of thought can be detected in the development of evolutionary theory in German paleontology between 1859 and World War II. Most paleontologists were hardly affected in their research by Darwin's Origin of Species. The traditionalists (School 1) accepted evolution within lower taxa (genera and families) but not for organisms in general. They also rejected Darwin's theory of selection. The early Darwinians (School 2) accepted Darwin's theory of transmutation and theory of selection as axioms and applied them fruitfully to the fossil record, thereby laying the foundation for the new research areas of phylogeny and paleo-biology. The enthusiasm of the early Darwinians faded when the fossil record and the problems of its interpretion became more widely known. The pluralists of the turn of the century (School 3) invented and adopted a wealth of hypothetical mechanisms in order to explain individual features of the fossil record. They failed, however, to provide one coherent theory. Dissatisfaction with this situation led to adoption of a dogmatic neo-Lamarckism (School 4), which was regarded as a coherent theory providing a fruitful research program. The rejection of the Lamarckian mechanism early in this century left paleontologists with only one kind of evolutionary mechanism: inner causes.Like many neo-Lamarckians several orthogeneticists (School 5) were highly interested in adaptation and did not see any contradiction between the inner causes of evolution and adaptation. The dominance of stratigraphical research programs in paleontology led in the 1930s and 1940s to a decrease in interest in adaptation. Stratigraphical records of taxa were accepted as meaningful in the context of evolutionary theory. Orthogenesis and the new concepts of saltation and cyclicism were amalgamated into one theory: typostrophism (School 6). This theory dominated German paleontology for decades after the war and only recently has the synthetic theory been seriously considered.Evolution was never very intensively discussed in German paleontology in the hundred years after Darwin's book. Most information used here comes from textbooks or from papers given on special occasions. It has been impossible to summarize how members of one school defended their views or discussed the ideas of competing schools.     

跨通道迁移及其认知神经机制

跨通道迁移是指将在一种感觉通道获得的知识应用于另一感觉通道的能力。跨通道迁移的相关研究探索了大脑表征不同感觉通道信息的方式,为减少重复学习、提高认知加工效率提供了新的见解。为较好地概括跨通道迁移的特点和机制,本文首先介绍了在物体识别、类别学习和时间知觉等不同领域对跨通道迁移效应的实验研究,之后介绍了支持跨通道迁移的表征类型和相关理论,梳理了跨通道迁移产生的理论及采用事件相关电位（ERP）和功能磁共振成像（fMRI）等技术探讨跨通道迁移神经机制的研究进展,并指出了影响跨通道迁移的因素。最后,对目前跨通道迁移研究成果及其潜在应用进行了总结,并对这一领域未来的研究问题进行了展望。     

Psychoses and creativity: is the missing link a biological mechanism related to phospholipids turnover?

Recent evidence suggests that genetic and biochemical factors associated with psychoses may also provide an increased propensity to think creatively. The evolutionary theories linking brain growth and diet to the appearance of creative endeavors have been made recently, but they lack a direct link to research on the biological correlates of divergent and creative thought. Expanding upon Horrobin's theory that changes in brain size and in neural microconnectivity came about as a result of changes in dietary fat and phospholipid incorporation of highly unsaturated fatty acids, we propose a theory relating phospholipase A2 (PLA2) activity to the neuromodulatory effects of the noradrenergic system. This theory offers probable links between attention, divergent thinking, and arousal through a mechanism that emphasizes optimal individual functioning of the PLA2 and NE systems as they interact with structural and biochemical states of the brain. We hope that this theory will stimulate new research in the neural basis of creativity and its connection to psychoses.     

生态系统多稳态研究进展

在多稳态的生态系统中,外力可能导致生态系统状态突然之间发生不可逆转的转变,从而达到一个新的平衡状态。但目前对多稳态理论的系统研究很少,如何使用预警信号来预测生态系统的状态转变依旧是个难题。通过多稳态理论的梳理提出了一个更加综合的多稳态定义,并以放牧模型为例,系统总结了多稳态理论的相关概念,将多稳态理论应用在生态系统演替和扰沌理论的解释中;通过对生态系统稳态转换预警信号的原理、优缺点和应用条件的分析,对不同尺度下多稳态的研究方法进行了归纳;最后提出了目前多稳态领域的研究问题和未来的研究重点。结果表明:(1)将时间和空间预警信号结合在一起,并量化正确预警信号的概率,对错误预警信号的比例进行加权,可能会提供更准确的稳态转换的预报。(2)定量观测试验适用于小尺度的研究,而较大尺度的研究则采用简化的模型来模拟研究,选择正确的尺度极有可能改变预警信号的可靠性。(3)结合多稳态理论研究生态系统临界转换和反馈控制机制,并将基于性状的特征指标和进化动力学纳入其中,是生态系统修复实践的重要研究方向。(4)将多稳态相关理论和生态保护管理政策的实践相结合,是多稳态理论未来应用的前景。本研究为多稳态理论和实践的...     

竞争-耐胁迫-杂草型植物对策理论及其应用研究进展

竞争-耐胁迫-杂草型植物(CSR)对策理论主要研究植物对环境胁迫和干扰的适应性特化。从功能生态学角度讲,CSR理论是通过解释各种功能性状协同变异的主导维度来反映植物的生态对策。而物种所采取的生态对策将决定其在群落中的生态位,并最终会影响生态系统过程与功能。自1974年Grime首次提出CSR对策的概念以来,CSR对策思想就受到了生态学家很大的关注,经过近半个世纪的发展,目前已经形成了比较完整的理论和研究方法体系。试图在回顾CSR理论及其研究方法发展的基础上,阐述其基本内涵,并重点从功能性状变异空间、植物适应性、群落过程和生态系统特性等4个方面概述CSR理论及其分析模型的验证及应用,梳理其最新研究进展。CSR理论已经得到了很多研究的广泛验证并应用于多种尺度上的植物生态学研究,但仍有一些方面值得进一步发展完善,如第四区缺失问题、功能性状变异主轴以外的变异、CSR对策与功能性状种内变异和谱系关系的联系等方面需要深入研究。     

The Stagnancy of Family Studies in Modern Academia: Resistances Toward the Integration of Evolutionary Theory

The theory of natural selection has been vital in unifying the biological sciences and their research with a single testable metatheory. Despite a plethora of research supporting natural selection, teaching the theory of evolution remains controversial in high schools and higher education (Wilson et al. 2009; Scott 1997). In this article, we sample the attitudes toward evolution of 170 faculty and graduate and undergraduate students in family studies and human development programs from across the United States to determine whether resistances toward evolution remain and to describe the correlates of these resistances. Results reveal that an individual’s prosocial meliorist attitudes, religious ideation, and his or her reported interest in and knowledge of evolution all uniquely contribute to whether they report evolutionary theory as being applicable to their area of research interests. We discuss the relevance of including evolutionary theory within family studies and human development research programs and make suggestions for how to implement an evolutionary studies program (Wilson et al. 2009).     

Microbial landscapes: new paths to biofilm research

It is the best of times for biofilm research. Systems biology approaches are providing new insights into the genetic regulation of microbial functions, and sophisticated modelling techniques are enabling the prediction of microbial community structures. Yet it is also clear that there is a need for ecological theory to contribute to our understanding of biofilms. Here, we suggest a concept for biofilm research that is spatially explicit and solidly rooted in ecological theory, which might serve as a universal approach to the study of the numerous facets of biofilms.     

基于知识发现的生物信息学

生物信息学的研究热点及方向的基本工具是知识发现,而知识发现是计算机科学近期研究的热点,具有一定的理论基础,基于知识发现的生物信息学是理论、应用相结合的必由之路 。     

International research and just sharing of benefits in Mexico

International research enrolling human subjects has raised an ethical concern regarding the just distribution of benefits between the countries that design the research and the host communities. Although several universal declarations have expressed this concern, a gap between theory and practice continues to exist, as well as a significant divergence between the design of the research protocol and the social context where it will be implemented. Although institutional review boards have made a valuable effort to evaluate international research, their sensitivity to the just sharing of research benefits as well as their attention to the social context must be evaluated. This article analyzes the distribution of benefits in a review of international research in Mexico and produces an ethical reflection based on the results.     

Supporting families involved in court cases about life‐sustaining treatment: Working as academics,advocates and activists

This article explores the links between our roles as academics, advocates, and activists, focusing on our research on treatment decisions for patients in vegetative and minimally conscious states. We describe how our work evolved from personal experience through traditional social science research to public engagement activities and then to advocacy and activism. We reflect on the challenges we faced in navigating the relationship between our research, advocacy, and activism, and the implications of these challenges for our research ethics and methodology—giving practical examples of how we worked with research participants, wrote up case studies and developed interventions into legal debates. We also address the implications of the impact agenda—imposed by the British Research Excellence Framework— for our actions as scholar‐activists. Finally, we ask how practicing at the borders of academia, advocacy, and activism can inform research—helping to contextualize, sensitize, and engage theory with practice, leading to a more robust analysis of data and its implications, and helping to ensure a dialogue between research, theory, lived experience, front‐line practice, law, and public policy.     

Are aposematic signals honest? A review

We explore the relevance of honest signalling theory to the evolution of aposematism. We begin with a general consideration of models of signal stability, with a focus on the Zahavian costly signalling framework. Next, we review early models of signalling in the context of aposematism (some that are consistent and some inconsistent with costly honest signalling). We focus on controversies surrounding the idea that aposematic signals are handicaps in a Zahavian framework. Then, we discuss how the alignment of interests between signaller and predator influences the evolution of aposematism, highlight the distinction between qualitative and quantitative honesty and review theory and research relevant to these categories. We also review recent theoretical treatments of the evolution of aposematism that have focused on honest signalling as well as empirical research on a variety of organisms, including invertebrates and frogs. Finally, we discuss future directions for empirical and theoretical research in this area.     

The derivation of D’Arcy Thompson’s theory of transformations from the theory of optimal design

It is shown informally that Cohn’s theory of Optimal Forms can be construed as a comparative theory, and that when this is done the celebrated theory of transformations of D’Arcy Thompson follows as a consequence. The implications of this type of theoretical foundation for the Thompson theory with regard to problems of comparative morphology are discussed, and some suggestions for the further implementation of the theory are described. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command, under Contract No. AF 49(638)-917.