Characterisation of rye B chromosome DNA by DNA/DNA hybridisation

The DNAs of wheat and rye plants with rye B chromosomes have been compared with wheat, rye and oats DNAs by DNA/DNA hybridisation. The presence of DNA from B chromosomes made no significant difference to the proportion of repeated sequence DNA. The repeated sequence fractions of these cereal DNAs were quantitatively divided into eight different groups on the basis of the amount of DNA/DNA hybridisation occurring between the different DNAs. Rye A and B chromosomes contained similar proportions of three of the groups. These results, together with estimates of the thermal stabilities of all the renatured DNA duplexes suggest that rye B chromosome DNA is very similar to rye A chromosome DNA in the proportion and heterogeneity of its repeated sequences.     

Mature Tissue and Crop Canopy Respiratory Characteristics of Rye, Triticale and Wheat

Crop dry matter and its chemical composition, together withcanopy and mature tissue respiration rates were measure at equivalentgrowth stages and temperatures for spring and winter rye, triticaleand wheat crops grown under irrigated field conditions. Canopyrespiration was partitioned into growth and maintenance respirationusing information from the chemical composition analysis ofthe crop biomass. Rates of dry matter accumulation early inthe growing season were significantly greater for rye cropsin comparison to triticale and wheat. However, when dry matterwas measured at similar ontogenetic stages, the productivityadvantage of the rye crop was no longer evident. Nevertheless,canopy respiration rates per unit ground area were significantlylower for rye than wheat over all temperatures and growth stages.Intergeneric differences in the respiration rates of matureleaf and stem tissues were consistent with those measured atcanopy scales. Differences in the chemical composition of thebiomass among genera were minimal, and insufficient to accountfor differences in canopy respiration due to synthesis respirationrequirement. Estimates of biomass maintenance requirements appearto be significantly lower for rye than wheat when calculatedat similar temperatures and ontogenetic stages. The maintenancecoefficient (m) depended on stage of development, suggestingthat m will decline earlier chronologically for rye than wheat,which implies that greater carbon retention is another aspectcontributing to the higher early-season crop growth rates ofspring and winter rye. Considering the lower respiration ratesof mature stems relative to leaves, the dependence of m on stem:leafratio was suggested as a useful approach to modelling ontogeneticeffects on maintenance respiration.Copyright 1993, 1999 AcademicPress Rye, triticale, wheat, dry matter, growth and maintenance respiration     

A Comparative Study of Early Seed Development in Genotypes of Barley and Rye

Early seed development was studied in 17 genotypes of barley,Hordeum vulgare L., and 11 genotypes of rye, Secale cerealeL. The numbers of cells and nuclei in the embryos and endospermsof developing seeds were scored daily for 5 days after selfpollination. For embryos, the mean cell doubling times variedfrom 9.2–12.9 h for barley and 15.7–22.7 h for rye.Endosperm mitotic cycle times of both species were shortestover the first 24 h after pollination but then became longer.A non-linear correlation was found between the number of embryocells and the number of endosperm nuclei in barely and rye andis similar to that for other members of the Triticeae. Hordeum vulgare L., Secale cereale L., barley, rye, embryo, endosperm, mean cell doubling time     

The Close Relationship Between the A and B Genomes in Avena L. (Poaceae) Determined by Molecular Cytogenetic Analysis of Total Genomic, Tandemly and Dispersed Repetitive DNA Sequences

The genusAvena L. (Poaceae) consists of diploid, tetraploid,and hexaploid species, with the B genome known only in tetraploidspecies and the D genome in the hexaploid species. DNA:DNAinsitu hybridization, using total genomic DNA from diploidAvenastrigosa Schreb. (A_sgenome) as a probe, labelled all 28 chromosomesof the AB tetraploidAvena vaviloviana (Malz.) Mordv. stronglyand uniformly, revealing the close relationship between thesetwo genomes. Comparison of patterns of size-separated DNA restrictionfragments between the diploidA. strigosa and the tetraploidA.vaviloviana , using 32 different restriction enzymes, revealedno differences. Southern hybridization using total AB genomicDNA as a probe also gave no differences in banding patternsbetween the two genomes, even when a large excess of A genomicDNA was used as a block. From anA. vaviloviana genomic library,1800 colonies were blotted and probed sequentially with A andAB genomic DNA, but no colony was identified to be B genomespecific. DNA digests of AB genome tetraploids with restrictionenzymeHae III gave a strong band at 4.2 kb. Clone pAbKB3, derivedfrom the 4.2 kb band, was found to be part of aTy1-copia -likeretrotransposon present in A and B genome chromosomes. ClonedrRNA genes were used forin situ hybridization and showed thatdiploidA. strigosa has four major sites for 18S-25S rDNA andtwo pairs of sites for 5S rDNA (pairs on the same satellitedchromosome, on different chromosome arms), while 4xA. vavilovianahas eight major sites for 18S-25S rDNA and four pairs of sitesfor 5S rDNA (pairs on the same satellited chromosome, on differentchromosome arms). A repetitive sequence from rye pSc119.2, showeddispersed hybridization, while the telomeric sequence in clonepLT11 hybridized to telomeres. Again no discrimination was possiblebetween A and B genome chromosomes. The molecular similaritiesbetween the diploidA. strigosa and thebarbata group tetraploidsclearly indicate that thebarbata group of tetraploids arosefrom A_sdiploids through autotetraploidization. Avena ; evolution; repetitive sequences; in situ hybridization; retrotransposons; genome organization     

Painting the rye genome with genome-specific sequences

We used rye-specific repetitive DNA sequences in fluorescence in situ hybridization (FISH) to paint the rye genome and to identify rye DNA in a wheat background. A 592 bp fragment from the rye-specific dispersed repetitive family R173 (named UCM600) was cloned and used as a FISH probe. UCM600 is dispersed over the seven rye chromosomes, being absent from the pericentromeric and subtelomeric regions. A similar pattern of distribution was also observed on the rye B chromosomes, but with weaker signals. The FISH hybridization patterns using UCM600 as probe were comparable with those obtained with the genomic in situ hybridization (GISH) procedure. There were, however, sharper signals and less background with FISH. UCM600 was combined with the rye-specific sequences Bilby and pSc200 to obtain a more complete painting. With these probes, the rye chromosomes were labeled with distinctive patterns; thus, allowing the rye cultivar 'Imperial' to be karyotyped. It was also possible to distinguish rye chromosomes in triticale and alien rye chromatin in wheat-rye addition and translocation lines. The distribution of UCM600 was similar in cultivated rye and in the wild Secale species Secale vavilovii Grossh., Secale sylvestre Host, and Secale africanum Stapf. Thus, UCM600 can be used to detect Secale DNA introgressed from wild species in a wheat background.     

Chromosome identification and nuclear architecture in triticale tritordeum F1 hybrids

In situ hybridization with cloned, repetitive DNA probes andtotal genomic DNA enables the parental origin of all chromosomesto be established in metaphases of triticale tritordeum F¹hybrids (2n=6x=42). Nuclei contain seven chromosomes of Hordeumchilense origin, seven from Secale cereale and 28 of wheat origin.When used as a probe, total genomic rye DNA labelled the ryechromosomes strongly and uniformly along their lengths, withbrighter regions coincident with the terminal heterochromatin.The probe labelled the wheat-origin chromosomes weakly and wasalmost undetectable on the H. chilense-origin chromosomes. Incontrast, under the same conditions, H. chilense DNA hybridizedstrongly to the H. chilense- and, with intermediate strength,to the S. cereale-origin chromosomes, excluding the subtelomericheterochromatin: it hybridized only weakly to the wheat chromosomes,in some experiments revealing characteristic bands on wheatchromosomes. Cloned repetitive DNA probes from rye and H. chilensewere used as probes to identify the linkage groups of all oftheir own-species chromosomes. Analysis of hybridization patternsof various probes to prophase and interphase nuclei indicatedthat there are many non-random features in the localizationof both repetitive DNA and whole chromosomes, although generalpatterns of nuclear organization have yet to emerge. Both theparticular lines used and the techniques developed here arelikely to be valuable for production and characterization ofplant breeding material. Key words: In situ hybridization, triticale, cytogenetics, plant breeding, Hordeum chilense     

Analysis of Organ Specificity of a Low Temperature Responsive Gene Family in Rye (Secale cereale L.)

The barley (Hordeum vulgare L.) low temperature responsive geneblt14 was used as a probe, to isolate two different cognateclones (rlt1412; rlt1421) from a rye (Secale cereale L.) cDNAlibrary prepared from low temperature-treated (6°C day/2°C night) shoot meristems of the cultivar, Puma. Northernblot analysis revealed that low temperature expression of rlt1412is highest in root tissues whereas, rlt1421 shows greatest mRNAaccumulation in mature leaf tissues. There is a relationshipbetween the steady-state levels of these mRNA species and thefrost hardiness of Puma (North American cultivar) and Rhayader(UK cultivar) such that the expression ofboth genes is higherin the more frost hardy cultivar, Puma, compared with Rhayader. DNA and predicted amino acid sequence analysis indicated thatthe rye and barley clones encode small proteins with consensusN-terminal signal sequences whose biological function is atpresent unknown. The relevant sequences are lodged in the EMBL data base. Key words: Rye, cold, cDNA, organ specificity, low temperature genes     

Effects of Parental Embryo and Endosperm Mitotic Cycle Times on Development of Hybrids Between Barley and Rye

Seven different barley/rye crosses were made using genotypeshaving close (predicted compatible) or dissimilar (predictedincompatible) mean cell doubling times. The relative successof the crosses was determined by a cytological study of earlyhybrid seed development and by the yield of 16-day-old hybridembryos. The results support the hypothesis that parental developmentalrates must be similar for successful hybridization. The degenerationof the hybrid endosperm occurred earlier in the predicted incompatiblecrosses than in the more compatible ones. Fewer hybrid embryoswere harvested at day 16 from predicted incompatible crossesthan from compatible crosses. We conclude that development ofhybrid embryos depends on the early stages of endosperm developmentand that mitotic rates in parental endosperms are more importantthan in embryos. Hordeum vulgare L., Secale cereale L., barley, rye, hybrid, mean cell doubling time, embryo, endosperm     

Growth Analysis of Solution Culture-grown Winter Rye, Wheat and Triticale at Different Relative Rates of Nitrogen Supply

At low nitrogen (N) supply, it is well known that rye has ahigher biomass production than wheat. This study investigateswhether these species differences can be explained by differencesin dry matter and nitrogen partitioning, specific leaf area,specific root length and net assimilation rate, which determineboth N acquisition and carbon assimilation during vegetativegrowth. Winter rye (Secale cereale L.), wheat (Triticum aestivumL.) and triticale (X Triticosecale) were grown in solution cultureat relative addition rates (R_N) of nitrate-N supply rangingfrom 0.03–0.18 d^-1and at non-limiting N supply under controlledconditions. The relative growth rate (R_W) was closely equalto R_Nin the range 0.03–0.15 d^-1. The maximalR_W at non-limitingnitrate nutrition was approx. 0.18 d^-1. The biomass allocationto the roots showed a considerable plasticity but did not differbetween species. There were no interspecific differences ineither net assimilation rate or specific leaf area. Higher accumulationof N in the plant, despite the same relative growth rate atnon-limiting N supplies, suggests that rye has a greater abilityto accumulate reserves of nitrogen. Rye had a higher specificroot length over a wide range of sub-optimal N rates than wheat,especially at extreme N deficiency (R_N=0.03–0.06 d^-1).Triticale had a similar specific root length as that of wheatbut had the ability to accumulate N to the same amount as ryeunder conditions of free N access. It is concluded that thebetter adaptation of rye to low N availability compared to wheatis related to higher specific root length in rye. Additionally,the greater ability to accumulate nitrogen under conditionsof free N access for rye and triticale compared to wheat maybe useful for subsequent N utilization during plant growth.In general, species differences are explained by growth componentsresponsible for nitrogen acquisition rather than carbon assimilation.Copyright 1999 Annals of Botany Company Growth analysis, nitrogen, nitrogen productivity, partitioning, specific root length, Secale cereale L.,Triticum aestivum L., X Triticosecale, winter rye, winter wheat, winter triticale.     

RESTRICTION ENZYME ANALYSIS OF DNA FROM SPECIES OF BULINUS (BASOMMATOPHORA: PLANORBIDAE) USING A CLONED RIBOSOMAL RNA GENE PROBE

A ribosomal RNA gene probe (pSM889) has been used to study restrictionenzyme digests of various species of Bulinus. In order to minimiseproblems of DNA shearing associated with snail tissues a methodof extracting nucleic acids from material embedded in agaroseblocks has been used. Restriction enzyme digests with Bgl IIand Bam HI hybridised to pSM889 showed clear differences betweenB. truncatus, B. wrighti, B. africanus and B. forskalii, representingthe four species groups of Bulinus. No differences were observedbetween samples of B. tropicus and B. truncatus digested withBam HI, Bgl II and Pst I. Intra-specific variation was observedbetween samples of B. forskalii from Säo Tomé andAngola digested with Bgl II and Hind III although restrictionprofiles for Bam HI, Pst I and Bst EII digests were similar.Intra-specific variation was also observed between two differentpopulation samples of B. wrighti from South Yemen using BamHI and Bgl II digested genomic DNA hybridised to pSM889. (Received 5 December 1989; accepted 19 April 1990)     

The Structure of Mature Rye Endosperm

Endosperm tissue of mature kernels of rye (Secale cereale L.)cv. Dominant was examined by light and transmission electronmicroscopy. It was found that storage protein in sub-aleuronecells occupies up to 35 per cent of the cell volume and formsa continuous matrix in which starch grains and cytoplasmic remnantsare embedded. In the prismatic endosperm, the storage proteinis present as a fine network interspersed between the numeroustype A and B starch grains. Protein bodies are not found inthe prismatic endosperm; only a few, less than 1 µm indiameter, are observed in pockets of disorganized cytoplasmin the sub-aleurone tissue. Thick cell walls and intercellularmaterial may contribute to the high pentosan content of ryeendosperm. Secale cereale L., rye, endosperm, protein matrix, ultrastructure     

Characters of DNA constitution in the rye B chromosome

We have used chromosome microdissection and microcloning to construct a DNA library of the entire B chromosome （B） of rye. New rye B-specific sequences have been screened from this pool, blasted with other sequences and analyzed to elucidate the characters of DNA constitution and the possible pathway of the origin of the rye B chromosome. We report the discovery of a new sequence that is specific to the rye B centromere.     

The Immunochemical Relationships of Prolamins of Temperate Meadow Grasses and Cereals

The immunochemical relationships between the aqueous alcohol-solubleprolamin storage proteins of temperate cereals (wheat, barley,rye and oats) and five species of Festucoid meadow grasses (Loliumperenne, Festuca rubra, F. arundinacea, Dactylis glomerata andPhleum pratense) were studied by "Western Blot" analyses usingantisera raised against C hordein of barley, -gliadin of wheatand avenins of oats. In addition, the reaction between the Chordein antiserum and the grass prolamins was studied usinga quantitative laser nephelometer assay. The results confirmedthe previously reported structural relationship between theprolamins of Festuca and Lolium and members of the Triticeae(barley, wheat, rye). They also showed a strong antigenic relationshipbetween the prolamins of Dactylis and Phleum and avenins ofoats, and this is consistent with their molecular weights andamino acid compositions. The results indicate that similar immunochemicalstudies may be of value in clarifying the taxonomic relationshipsof Festucoid meadow grasses. Key words: Cereals, grasses, prolamins, homology, evolution, immunochemistry     

Relationships among Genome Size, Environmental Conditions and Geographical Distribution in Natural Populations of NW Patagonian Species of Berberis L. (Berberidaceae)

Variation in genome size of 24 populations belonging to 11 NWPatagonian species of Berberis was analysed as a function ofthe environment and geographical location. The variation showedthree levels of discontinuity, two of which corresponded todiploid species (2 n = 28) while the third corresponded to polyploidspecies (2 n = 56). Diploids with DNA content ranging from 1.463pg to 1.857 pg includedBerberis cabrerae , B. chillanensis,B. montana, B. serrato-dentata and B. bidentata. Diploids withDNA content ranging from 2.875 pg to 3.806 pg included B. linearifolia,B. darwinii, B. parodii and B. empetrifolia. The genome sizeof the polyploid species B. buxifolia and B. heterophylla rangedfrom 5.809 pg to 6.844 pg. Principal component analysis (PCA)was applied to represent the variability of environmental conditions.The eigenvectors of the principal component axes showed thatPC1 discriminates the populations according to rainfall, typesof vegetation and geomorphology; altitude and latitude, on theother hand, contribute to PC2 and PC3, respectively. From theseresults it is concluded: (1) that diploids with lower DNA contentgrow in high-elevation sites having greater rainfall but lowerwater availability; (2) diploids with higher DNA content areassociated with half-elevation forests where the vegetativeperiod is longer, the water availability is greater and thetemperatures are higher; and (3) the distribution pattern ofpolyploids is considerably wider than that of diploids, whichare geographically and ecologically restricted to forest areas.These results suggest that the C-value plays an important rolein the ability of the species to adapt to different growingconditions. Copyright 2000 Annals of Botany Company Berberis L., barberry, calafate, michay, genome size, DNA content, environmental correlation, Patagonia     

Rye chromosome translocations in hexaploid wheat: a re-evaluation of the loss of heterochromatin from rye chromosomes

Summary Using in situ hybridization techniques, we have been able to identify the translocated chromosomes resulting from whole arm interchanges between homoeologous chromosomes of wheat and rye. This was possible because radioactive probes are available which recognize specific sites of highly repeated sequence DNA in either rye or wheat chromosomes. The translocated chromosomes analysed in detail were found in plants from a breeding programme designed to substitute chromosome 2R of rye into commercial wheat cultivars. The distribution of rye highly repeated DNA sequences showed modified chromosomes in which (a) most of the telomeric heterochromatin of the short arm and (b) all of the telomeric heterochromatin of the long arm, had disappeared. Subsequent analyses of these chromosomes assaying for wheat highly repeated DNA sequences showed that in type (a), the entire short arm of 2R had been replaced by the short arm of wheat chromosome 2B and in (b), the long arm of 2R had been replaced by the long arm of 2B. The use of these probes has also allowed us to show that rye heterochromatin has little effect on the pairing of the translocated wheat arm to its wheat homologue during meiosis. We have also characterized the chromosomes resulting from a 1B-1R translocation event.From these results, we suggest that the observed loss of telomeric heterochromatin from rye chromosomes in wheat is commonly due to wheat-rye chromosome translocations.     

Identification of the Genomic Constitution ofMusaL. Lines (Bananas, Plantains and Hybrids) Using Molecular Cytogenetics

The genomic constitutions of someMusaL. lines (bananas, plantainsand artificial hybrids) were identified using molecular cytogenetictechniques. Double targetin situDNA:DNA hybridization to chromosomespreads using as probes, total genomic DNA isolated from diploidMusalinesof known AA (labelled with biotin-11-dUTP) and BB (labelledwith digoxigenin-11-dUTP) genome constitution was carried out.The use of 60% acetic acid combined with heating over a flamegave high quality chromosome spreads free of cytoplasm forinsituhybridization. Total genomic A DNA labelled broad centromericregions of all 22 chromosomes of the diploid line, Calcutta4 (M. acuminataColla. ssp.burmanniccoides; A genome) with somechromosomes showing stronger hybridization. Labelled DNA fromthe B genome hybridized strongly to the centromeric regionsof all 22 chromosomes of Butohan 2 (M. balbisianaColla; B genome).The two satellited chromosomes of genome B labelled stronglywith genomic A DNA.In situhybridization of labelled A and Bgenomic DNA to metaphase chromosomes of triploid AAB and ABBcultivars discriminated between A and B genome chromosomes.The plantains Agbagba, Obino l'Ewai and Mbi Egome showed 22genome A and 11 genome B chromosomes while the cooking bananasBluggoe and Fougamou showed 11 genome A and 22 genome B chromosomes.Hybridization of labelled A and B genomic DNA to chromosomesof the hybrids showed that TMP2x 2829-62 has all 22 genome Achromosomes while TMPx 4698-1 has 33 genome A and 11 genomeB chromosomes.In situhybridization of labelled total genomicDNA to chromosomes has immense potential for identificationof chromosome origin and can be used to characterize cultivarsand hybrids produced inMusabreeding.Copyright 1997 Annals ofBotany Company Genomicin situhybridization; banana; plantain; hybrids; plant breeding; genome organization; biodiversity     

Cessation of cell elongation in rye coleoptiles is accompanied by a loss of cell-wall plasticity

The mechanism by which endogenous cessation of coleoptile elongationafter emergence of the primary leaf is brought about was investigatedin rye seedlings (Secale cereale L.) that were either grownin darkness or irradiated with continuous white light. In 3-d-oldetiolated (growing) coleoptiles a turgor pressure of 0.59 MPawas measured. In 6-d-old coleoptiles, which had ceased to elongate,cell turgor was 0.51 MPa and thus only 13% lower than in therapidly growing organ. Hence, the driving force for growth (turgor)is largely maintained. Cell-wall plasticity (E_pl) and elasticity(E_Ql were determined with a constant load extensiometer bothin vivo (turgid coleoptile segments) and in vitro (frozen-thawedsamples). Cessation of coleoptile elongation was correlatedwith a 95% reduction in E_pl9 whereas E_Ql was only slightly affected.Extension kinetics were measured with living and frozen-thawedsegments cut from growing and non-growing coleoptiles. The correspondingstress-strain (load-extension) curves indicate that the cellwall of the growing coleoptile behaves like an elastic-plasticmaterial whereas that of the non-growing organ shows the behaviourof an elastic solid. These data demonstate that E_pl representsa true plastic (irreversible) deformation of the cell wall.It is concluded that cessation of coleoptile growth after emergenceof the primary leaf is attributable to a loss of cell-wall plasticity.Hence, a mechanical stiffening of the cell wall and not a lossof turgor pressure may be responsible for the deceleration ofcell elongation in the rye coleoptile. Key words: Extension growth, rye coleoptile, cell-wall extensibility, turgor pressure     

Highly repetitive sequences in B chromosomes of Secale cereale revealed by fluorescence in situ hybridization.

An analysis of the presence and distribution of the rye and wheat repeated sequences in rye B chromosomes was carried out by fluorescent in situ hybridization. Probes used consisted of three highly repetitive sequences from rye (pSc119.2, pSc74, and pSc34) and the multigene families for the 25S-5.8S-18S and 5S rDNA from wheat (pTa71 and pTa794, respectively). pSc74 and pSc119.2 showed hybridization signals in the telomeric regions of rye B chromosomes. The remaining DNA clones did not hybridize to the B chromosomes.