Nematococcomyces rhododendri, a new species in a new genus of the Rhytismatales from China

A fungus belonging to the Rhytismatales found on twigs of Rhododendron lutescens in Yunnan, southwestern China, is described as a new species in a new genus. It is characterized by Coccomyces-like ascomata but differs in having elliptical ascospores with filiform, hyaline appendages. The ascospores of this new taxon are somewhat similar to those of species of Parvacoccum, but the latter has symmetrical, fusiform ascospores with funnel-shaped appendages. The new genus also is distinct from Hypoderma, Hypodermella, Myriophacidium, Ploioderma, Neococcomyces and Therrya.     

Naemacyclus culmigenus,a newly reported potential pathogen to Miscanthus sinensis,new to Japan

Since the summer of 2010, a discomycete with erumpent apothecia associated with a leaf blight of Miscanthus leaves, were often collected. The morphological characteristics of the fungus suggested it was a member of the Helotiales rather than the Rhytismatales and this was supported by a phylogenetic analysis. Based on a morphological comparison with the type specimen of Naemacyclus culmigenus, currently known from Poaceae (Andropogon and Panicum), it was identified as N. culmigenus, new to Japan. The molecular phylogenetic analysis showed that the generic delimitation of Naemacyclus and related species requires clarification, as does their higher classification within the Leotiomycetes.     

THREE NEW SPECIES OF BERBERIS FROM YUNNAN

Three new species of Berberis from Yunnan are described and illustrated: B. dokerlaica Harber, B. yiliangensis Harber and B. brevipedicillata Harber. The remarkable diversity of this genus in the Hengduan Mountains of south central China is discussed.     

Development of a common PVS2 vitrification method for cryopreservation of several fruit and vegetable crops

Many cryopreservation techniques are currently available, and it is common for new modifications to be developed for individual crops or specific genotypes. In this study, results of variations of the PVS2 cryopreservation protocol are compared to provide evidence for the suitability of a standard form of this technique for cryopreservation of a range of fruit, berry crops, and potato. Shoot cultures of Malus, Solanum, Lonicera, and Berberis were tested with variations of cold acclimation, pretreatment media, and PVS2 exposure times. A general protocol with some modifications was produced that was suitable for all four genera. The regenerative capacity of shoot tips after cryopreservation by this method exceeded a mean of 50% for Malus, Solanum, Lonicera, and Berberis, which is sufficient for setting storage in a cryobank. After liquid nitrogen storage, the shoot cultures that survived had a healthy appearance and developed rapidly. For each species tested, the only optimization required was the preparation of donor plants by cold acclimation and pretreatment. The choice of one common method simplifies the methodology for conducting experiments and storing a range of germplasm. The use of the PVS2 vitrification method with a 0.3-M sucrose pretreatment is multiuse and can be recommended as the most effective method for the cryopreservation of shoot tips from many plant species.     

Can vegetation provide indications of ancient lake shorelines after more than one hundred years? A case study of Iskander-kul Lake,Tajikistan

Bioindication is a common approach to assess and evaluate environmental changes over both short or long periods of time. Here we attempt to highlight that vegetation can provide indications of the palaeoshoreline of Lake Iskander-kul, even after at least 150 years. It is an example of a dammed lake that was created by a huge mass rockfall as a result of a strong earthquake during the late Pleistocene. Applying the two way indicator species analysis (TWINSPAN) we found that the shrubby vegetation is the particular one that can still effectively thrive along the palaeoshoreline despite the lake downlift. Using the phi coefficient as a fidelity measure for certain vegetation type, we found, that Juniperus seravschanica, Lonicera seravschanica, Berberis integerrima, Seseli lehmannianum, Astragalus kabadianus and Ephedra intermedia have the highest indicator value for palaeoshoreline. Apart from the ancient palaeoshoreline, on the screes and slopes surrounding the lake, significantly different vegetation types developed on the screes and slopes dominated by steppe (Hyssopus servaschanica, Galium turkestanicum, Festuca valesiaca) and scree (Ferula foetidissima, Stipa drobovii or Ferula kuhistanica) vegetation types. Using the multivariate analysis (CCA) we show that the slope inclination and distance from the palaeoshorelines has considerable influence on species composition within the study plots.     

Molecular phylogeny reveals a core clade of Rhytismatales

Rhytismatales (Leotiomycetes, Pezizomycotina, Ascomycota) are an order of mostly plant-associated ascomycetes with a global distribution. Well known taxa include the Rhytisma tar spots on Acer spp. and several needle-cast pathogens in genera Lophodermium and Meloderma. Critical studies are lacking at all taxonomic ranks from order to species, and in particular the genus taxonomy in the order has been criticized for being unnatural. We used nuclear LSU and mitochondrial SSU sequences in Bayesian phylogenetic analyses to define a core clade of Rhytismatales sensu stricto. Some of the genera traditionally placed within the Rhytismatales, Ascodichaena, Marthamyces, Mellitiosporium, Potebniamyces, Propolis and Pseudophacidium, are shown to be phylogenetically distinct, all related to various other taxa at present placed in the polyphyletic Helotiales. Within the core clade only Cudonia, Spathularia and Terriera are supported as monophyletic. The large genera Coccomyces, Hypoderma and Lophodermium all are polyphyletic as are a few smaller genera. The traditionally used characters of ascoma and spore shape are shown to be unreliable for the delimitation of monophyletic genera but in some cases can be useful when combined with other characters. In this study we provide 72 new nrLSU and 64 new mtSSU sequences. Together with publicly available sequences data for 103 specimens representing 91 species of Rhytismatales are now available. Despite this taxon sampling intensity is still too low to propose an alternative generic taxonomy.     

Facilitation by a dwarf shrub enhances plant diversity of human-valued species at high elevations in the Himalayas of Nepal

Facilitation is a global phenomenon that occurs when one species promotes the growth, survival, or reproduction of another species, mostly in stressful environments. However, the importance of facilitation by shrubs in maintaining plant community diversity is not well evaluated in the Himalayas, especially for the richness and conservation of medicinal and human-valued species. Therefore, we aimed to explore the facilitative role of a dwarf shrub species, Berberis angulosa, in maintaining plant composition and richness of human-valued species in the Langtang valley of Nepal's Himalayas. We censused plant species in open patches and beneath Berberis during monsoon and post-monsoon (dry) seasons at three elevations.Total species richness and richness of human-valued species were significantly higher inside the Berberis canopy than in gaps; the former being 39% and the latter 46% greater under shrubs than in open sites. Facilitation by Berberis shrubs promoted plant community diversity irrespective of season and elevation; however, higher differences in mean species richness for both total plant species and human-valued species during the dry season and at high elevation indicated increased facilitation intensity under more stressful conditions. The facilitative effect of Berberis shrubs increased, combining both seasons, overall plant diversity by 19% (total=105), and human-valued species by 16% (total=56). Our results show the importance of facilitation by nurse shrubs in structuring plant communities and protecting medicinal and socio-ecologically important plants, thus enriching ecosystem services in the Himalayas. These results suggest nurse plant species should be incorporated into conservation policies and management strategies for effective biodiversity conservation and sustainability, especially in the face of climate change.     

Two species of Lirula on Abies from Yunnan, Southwest China

Based on a recent investigation of species of the Rhytismatales in the eastern Himalayas in China, two species of Lirula on Abies were found, one of which is described as a new species, Lirula yunnanensis, which differs from Lirula japonica mainly by ascomatal structure and conidiomatal features, while the other is Lirula exigua, a new record for China. An analysis of the combined sequences of ITS + LSU r DNA showed that Lirula macrospora and Lophodermium piceae were closely related and that Lirula yunnanensis and Lophodermium autumnale were grouped together. The genus of Lirula should be redefined based on more molecular data. Lirula exigua was distantly related to Lirula species and its systematic position has to be confirmed by further molecular data. A key for known species of Lirula worldwide is provided.     

Bisbenzylisoquinoline alkaloids in Berberis cell cultures

Callus cultures of 34 Berberis cell lines representing 33 species were screened for alkaloids using TLC and HPLC. Jatrorrhizine was always found to be a major constituent; two B. stolonifera lines were the richest in bisbenzylisoquinolines. The new alkaloid 2-norberbamunine was isolated from cultures of B. stolonifera V29 together with berbamunine, aromoline, berbamine, isotetrandrine and jatrorrhizine. The time course of bisbenzylisoquinoline accumulation was studied in B. stolonifera V29 suspension cultures and it was found that the concentrations of these alkaloids rose throughout the cell growth phase.     

Staphylococcus aureus MDR efflux pump inhibitors from a Berberis and a Mahonia (sensu strictu) species

Bioactive fractionation, based on multi-drug resistance (MDR) pump inhibition in Staphylococcus aureus, resulted in the isolation of the active inhibitors 5′-methoxyhydnocarpin-D from leaves of Berberis (formerly Mahonia) trifoliolata and pheophorbide a from Berberis fendleri. The hydnocarpin derivative was not found in the latter species. Pheophytin a (the phytol derivative of pheophorbide a) was identified from both species, but it proved to have no MDR pump inhibitory activity. The somewhat uncommon, and inactive, flavonoid tricin was identified from B. trifoliolata. The occurrence of a flavonolignan in Mahonia-tpe species and its absence in Berberis sensu strictu may provide a chemical differentiation between the two groups which are now recombined on the basis of DNA studies. The strong bacterial efflux pump inhibition of pheophorbide a could be of importance as a plant defense against natural pathogens.     

Taxonomy and biology of leafhoppers of the genus Macropsis (Homoptera, Cicadellidae, Macropsinae) living on Berberis spp. (Berberidaceae)

Two Berberis-dwelling Macropsis species, M. berberidis Dub., 1966 and M. berberidicola Dub., 1966 from the West Tien Shan Mountains are redescribed. Macropsis berberidis arkytica Tishetshkin ssp. n., M. berberidis pallidicephala Tishetshkin ssp. n., and M. berberidicola narynensis Tishetshkin ssp. n. are described, the data on their host specialization, male calling signals, and distribution are provided. In spite of identical ecological preferences, the two species were never found in the same locality. Such vicariance appears to be the result of similarity of their signal pattern and competition for acoustic communication channels.     

Successive microsporogenesis in eudicots, with particular reference to Berberidaceae (Ranunculales)

The eudicot clade of angiosperms is characterised by simultaneous microsporogenesis and tricolpate pollen apertures. Successive microsporogenesis, where a distinct dyad stage occurs after the first meiotic division, is relatively rare in eudicots although it occurs in many early branching angiosperms including monocots. An extensive literature survey shows that successive microsporogenesis has arisen independently at least six times in eudicots, in five different orders, including Berberidaceae (Ranunculales). Microsporogenesis and pollen apertures were examined here using light and transmission electron microscopy in eleven species representing six genera of Berberidaceae. Successive microsporogenesis is a synapomorphy for the sister taxa Berberis and Mahonia (and possibly also Ranzania), the remaining genera are simultaneous. Callose wall formation in Berberis and Mahonia is achieved by centripetal furrowing, though centrifugal cell plates are more usual for this microsporogenesis type. This discrepancy could reflect the fact that the successive type in Berberidaceae is derived from the simultaneous type, and centripetal furrowing has been retained. Eudicots with successive microsporogenesis usually produce tetragonal or decussate tetrads, though occasional tetrahedral or irregular tetrads in Berberis and Mahonia indicate that the switch from simultaneous to successive division is incomplete or “leaky”. In contrast, linear tetrads produced by successive microsporogenesis in Asclepiadoideae (Apocynaceae s.l.) are the result of a highly specialised developmental pathway leading to the production of pollinia. Pollen in successive eudicots is dispersed as monads, dyads, tetrads, and as single grains in pollinia. Apertures are diverse, and patterns include spiraperturate, clypeate, irregular, monocolpate, diporate and inaperturate. It is possible that successive microsporogenesis, although rare, potentially occurs in other eudicots, for example, in species where pollen is inaperturate.     

Biosystematic study of the genus <Emphasis Type="Italic">Berberis</Emphasis> L. (Berberidaceae) in Khorassan,NE Iran

Four species of the genus Berberis L. have been reported from different regions, including Khorassan provinces. In this article, a revision of this genus in Khorassan provinces is presented. For better validation of the results, morphological, palynological, chromosomal and molecular studies were conducted on specimens collected from Khorassan provinces and preserved in FUMH and TARI herbaria. Morphological study resulted in recognition of three species of Berberis, from which two species are new records for Khorassan. Four unknown new taxa with new morphological characters were also identified, but left for further analysis because of the high percentage of polyploidy and hybridization in this genus. In order to analyze morphological data, 35 OTUs were provided and scored using the distance method and PCoA. The shape and size of pollen grains were nearly equal in the examined taxa, and there were no obvious differences between them. Chromosomal examination indicated tetraploidy (2n = 4x = 56) in all of the studied taxa. Molecular studies were accomplished by RAPD and sequencing of the ITS region to construct a framework of relationships between the taxa. Molecular studies emphasized the difference in the four unknown taxa from others. The total evidence indicates that Berberis L. shows a high percentage of polyploidy and hybridization.     

1069. Berberis ludingensis Harber,a new species in section Wallichianae from Sichuan,China: Berberidaceae

A new species of Berberis in section Wallichianae, B. ludingensis Harber is described from Luding Xian in Sichuan. Several collections of this compact, spiny species have been made in recent years.     

Molecular Characterization of Cryptosporidium Isolates from Humans and Animals in Iran

Isolates of Cryptosporidium spp. from human and animal hosts in Iran were characterized on the basis of both the 18S rRNA gene and the Laxer locus. Three Cryptosporidium species, C. hominis, C. parvum, and C. meleagridis, were recognized, and zoonotically transmitted C. parvum was the predominant species found in humans.     

小檗属植物一新种——平坝小檗

报道了中国贵州小檗科小檗属植物一新种,即平坝小檗（Berberis pingbaensis M. T. An）新种与堆花小檗（B. aggregate Schineid.）相近似,但植物较小,果具白粉。     

863. BERBERIS ZHAOTONGENSIS

A new species of Berberis, in sect. Wallichianae, Berberis zhaotongensis Harber is described and illustrated.     

Distribution and taxonomy of shallow marine Ostracods from Northern Socotra Island (Indian Ocean) - Yemen

Forty-seven species belonging to 30 genera of ostracods have been identified from Recent shallow marine sediments collected along the northern coastline of the island of Socotra (Indian Ocean). The systematics and distribution of these ostracods are discussed. Three genera, Loxoconcha, Bosasella, and Xestoleberis are found to have high species diversity. The species Loxoconcha ghardaqensis, Moosella striata are best documented in the Red Sea and Gulf of Aden while Kotoracythere inconspicua and Triebelina sertata were found to be the most widespread species. The fauna shows a close affinity to other ostracod assemblages of the Indo-Pacific region, East African coast and Red Sea.     

Community composition of root‐associated fungi in a Quercus‐dominated temperate forest: “codominance” of mycorrhizal and root‐endophytic fungi

In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak‐dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal‐root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root‐associated fungal community was dominated by root‐endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root‐associated fungal communities of oak‐dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.     

Phytochemical and pharmacological studies in genus Berberis

The genus Berberis is well known for its diversity and pharmacological uses in traditional medicine system since ancient time. Exploring this medicinal plant with more prominence is the need of present day medicinal system. The present review highlighted the phytochemical and pharmacological studies reported from genus Berberis over the last two decades.