Is vegetation composition or soil chemistry the best predictor of the soil microbial community?

With the species composition and/or functioning of many ecosystems currently changing due to anthropogenic drivers it is important to understand and, ideally, predict how changes in one part of the ecosystem will affect another. Here we assess if vegetation composition or soil chemistry best predicts the soil microbial community. The above and below-ground communities and soil chemical properties along a successional gradient from dwarf shrubland (moorland) to deciduous woodland (Betula dominated) were studied. The vegetation and soil chemistry were recorded and the soil microbial community (SMC) assessed using Phospholipid Fatty Acid Extraction (PLFA) and Multiplex Terminal Restriction Fragment Length Polymorphism (M-TRFLP). Vegetation composition and soil chemistry were used to predict the SMC using Co-Correspondence analysis and Canonical Correspondence Analysis and the predictive power of the two analyses compared. The vegetation composition predicted the soil microbial community at least as well as the soil chemical data. Removing rare plant species from the data set did not improve the predictive power of the vegetation data. The predictive power of the soil chemistry improved when only selected soil variables were used, but which soil variables gave the best prediction varied between the different soil microbial communities being studied (PLFA or bacterial/fungal/archaeal TRFLP). Vegetation composition may represent a more stable ‘summary’ of the effects of multiple drivers over time and may thus be a better predictor of the soil microbial community than one-off measurements of soil properties.     

Is the Ca:Al ratio superior to pH,Ca or Al concentrations of soils in accounting for the distribution of plants in deciduous forest?

The distributions of vascular plants in south Swedish deciduous forests were related to exchangeable (exc) and soil solution concentrations of H⁺ (pH), Ca, Al and the Ca:Al ratios within these fractions. Topsoils (0–5 cm) of 172 sites with a pH_KCl of 3.2–3.9 (corresponding to 3.7–4.4 in soil solution) were used. In the soil solution both total Al_t and quickly reacting Al_r were determined. Exchangeable concentrations were generally well related to plant distributions, the highest correlation coefficients usually being given by pH_KCl>Ca_exc>Al_exc.>(Ca:Al)_exc. The (Ca:Al)_exc ratio was clearly inferior. Out of the soil solution variables studied, Ca concentration, followed by pH, was best correlated with plant distributions, Al_t, Al_r, and the Ca:Al ratios having similar and lower coefficients. It is concluded that the use of Ca:Al ratios as a general measure of Al toxicity in controlling plant distributions is rather problematic. It seems difficult to apply evidence for Ca-Al interactions from solution culture experiments to field conditions when measured as exchangeable or soil solution concentrations of the soil.     

Do vine species in neotropical forests see the forest or the trees?

Questions: Is the occurrence of vine species in neotropical rain forests primarily determined by properties of the forest (environmental factors), by properties of the trees (tree species or tree size) or are vines randomly distributed? Location: Maya Biosphere Reserve, Guatemala. Methods: In five 1‐ha plots that span variation from unlogged forest to forest impacted by recurrent human disturbance we recorded the presence of all climbing vine species on every tree. The presence of all free standing vine species and 11 environmental variables were recorded in 100‐m² subplots. The relationship of host tree diameter and host tree identity on single tree vine species richness was investigated by GLM modelling. Partial redundancy analyses were used to partition the variation in vine species composition on two sources: environmental factors and tree species identity. Results: Single tree vine richness increased with increasing host tree DBH and differed significantly among host species. For climbing vines, the ratio of variation in subplot presence explained by tree species and by environmental variables was ca. 4:1 (in the most disturbed logged plots slightly lower), for free standing vines this ratio varied from 1:2 in the most disturbed logged plots to 9:1 in reserve plots, while a ratio of ca. 1:1 was found for all plots analysed together. Conclusion: Different tree species have different probabilities of being infested by vines. Vines see both the forest and the trees; the environment is more important in earlier developmental stages, properties of individual trees become more important from the time vines start to climb.     

Nutrient composition,microbial biomass and activity at the air–water interface of small boreal forest lakes

Nutrient contents, microbial biomass and microbial activities werestudied at the air–water interface in the surface microlayer (SM) andsubsurface waters (10 cm depth) in small boreal forest lakes. Two differentsampling techniques were used to evaluate differences in the nutrientcomposition in SM- and subsurface waters and to study their effects onmicrobial biomass and activities of neustonic and planktonic microbialcommunities. Inorganic nutrients were only slightly enriched in the SMcompared to the subsurface water samples. P-PO⁴ variedbetween 6–10 mg P-PO₄ m_™3 in the SM andbetween 1–2 mg P–PO₄ m^-3 in thesubsurface waters. Dissolved inorganic nitrogen (NO₂ ^™+NO₃ ^™+NH₄ ⁺) varied between 12–20 mg Nm^™3 in the SM and between 3–12 mg N m^™3 insubsurface waters. Polymeric organic bound phosphorus and nitrogen wereabout 10 times enriched in the SM compared to the subsurface samples.However, microbial biomass like chlorophyll was by a factor of 8 to 280times enriched in the SM of meso-polyhumic lakes and 2–25 timeenriched in an acidified lake. Bacterioneuston biomass was by a factor of1.5 to 2 times enriched in the SM compared to that of bacterioplankton.However, fungal biomass was 30 to 40 times higher in the SM than in thesubsurface samples. Microbial activities was measured as[¹⁴C]-UL-α-D-Glucose uptake and as microbial biopolymerprocessing measured with 4-methylumbelliferyl-α-D-Glucopyranoside asmodel substrate for tracing the enzymatic cleaving rate of α-glycosidicpolymer bound glucose via microbial α-glucosidase (αGlucAse). [¹⁴C]-UL-α-D-Glucose uptake was about 4–5 timeshigher in bacterioneuston compared to bacterioplankton and varied between4–22 μm m³ h^™1 in bacterioneustoncommunities and between 1.5–2.5 μm m^™3h^™1 in bacterioplankton. αGlucAse was about 1.5 to 8 timeshigher in SM samples and varied between 38–108 μmm^™3 h^™1 in the SM microbial communities comparedto 12–35 μm m^™3 h^™1 in thesubsurface water microbial communities. The ratios between αGlucAseactivities and [¹⁴C]-UL-α-D-Glucose uptake was about3–5 times lower in the bacterioneuston than in the bacterioplanktoncommunities which means a tighter metabolic coupling between biopolymerprocessing and substrate uptake in bacterioneuston than in bacterioplankton.Biofilms in surface microlayers at the air–water interface in smallhumic forest lakes can provide favourable microhabitats for the growth ofneuston communities which may act as important sinks for allochthonousnutrient resources and may then generate new nutrient pools and prey forplanktonic microbial food webs. This revised version was published online in July 2006 with corrections to the Cover Date.     

Does disturbance regime change community assembly of angiosperm plant communities in the boreal forest?

Aims To examine if and how species and phylogenetic diversity change in relation to disturbance, we conducted a review of ecological literature by testing the consistency of the relationship between phylogenetic diversity and disturbance and compared taxonomic groups, type of disturbance and ecosystem/habitat context. We provide a case study of the phylogenetic diversity–disturbance relationship in angiosperm plant communities of a boreal forest region, compared with types of natural and anthropogenic disturbances and plant growth forms.Methods Using a large-scale sampling plot network along a complete (0–100%) anthropogenic disturbance gradient in the boreal biome, we compared the changes of angiosperm plant community structure and composition across plots. We estimated natural disturbance with historical records of major fires. We then calculated phylogenetic diversity indexes and determined species richness in order to compare linear and polynomial trends along disturbance gradients. We also compared the changes of community structure for different types of anthropogenic disturbances and examined how the relationships between species and phylogenetic diversity and disturbance regimes vary among three different life forms (i.e. forbs, graminoids and woody plants).Important findings Phylogenetic diversity was inconsistently related to disturbance in previous studies, regardless of taxon, disturbance type or ecosystem context. In the understudied boreal ecosystem, angiosperm plant communities varied greatly in species richness and phylogenetic diversity along anthropogenic disturbance gradients and among different disturbance types. In general, a quadratic curve described the relationship between species richness and anthropogenic disturbance, with the highest richness at intermediate anthropogenic disturbance levels. However, phylogenetic diversity was not related to disturbance in any consistent manner and species richness was not correlated with phylogenetic diversity. Phylogenetic relatedness was also inconsistent across plant growth forms and different anthropogenic disturbance types. Unlike the inconsistent patterns observed for anthropogenic disturbance, community assembly among localities varying in time since natural disturbance exhibited a distinct signature of phylogenetic relatedness, although those trends varied among plant growth forms.     

Is the fatty acid composition of Daphnia galeata determined by the fatty acid composition of the ingested diet?

1. The fatty acid (FA) composition of Daphnia galeata and their algal food was analysed and showed many similarities, however, some significant differences were also found in the relative abundance of the FA C16 : 4ω3 and docosahexaenoic acid (DHA). Their relative abundances were much lower in daphnids than in their algal diet.
2. When daphnids were fed three distinct emulsion particles with DHA : eicosapentaenoic acid (EPA) ratios of c. 0.7, 2 and 4, the final DHA : EPA ratio in the daphnids always favoured EPA. The increase of the food DHA : EPA ratio resulted in a minor increase of DHA (to c. 2%). Feeding the animals on emulsion particles with increasing ratios of DHA : EPA, caused a minor ( c. 2%) increase of DHA level but EPA levels remained high ( c. 10%).
3. When labelled with [¹⁴C]linoleic acid and [¹⁴C]linolenic acid daphnids showed low conversion of both essential FA into C20 polyunsaturated fatty acids (PUFAs). This low conversion activity might explain the importance of C20 PUFAs as dietary compounds in the food of Daphnia.
4. The results indicate the insignificance of DHA and C16 : 4ω3 for daphnids. As EPA can be derived from C18 : 3ω3 it is not strictly essential, although it might be a significant factor in food quality for Daphnia.     

Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation?

Aim

To assess whether vegetation composition and soil chemistry explain the same or different parts of the variation in the soil microbial community (SMC).

Method

The above and below-ground communities and soil chemical properties were studied along a successional gradient from moorland to deciduous woodland. The SMC was assessed using PLFAs and M-TRFLPs. Using variance partitioning, Co-Correspondence Analysis (CoCA) and Canonical Correspondence Analysis (CCA), the variation (total inertia) in the SMC was partitioned into variation which was uniquely explained by either plant composition or soil chemistry, variation explained by both soil chemistry and plant composition, and unexplained variation.

Results

Plant community composition uniquely explained 30, 13, 16 and 20% of the inertia and soil chemistry uniquely explained 5, 18, 9 and 9% of the inertia in the archaeal TRFLPs, bacterial TRFLPs, fungal TRFLPs and all PLFAs, respectively.

Conclusion

For the first time, variance partitioning was used to include data from a CoCA; although the current limits of such an approach are shown, this study illustrates the potential of such analyses and shows that soil chemistry and plant composition are, in substantial amounts, explaining different parts of the variation within the SMC. This marks an important step in furthering our understanding of the relative importance of different drivers of change in the SMC.     

Monitoring,indicators and community based forest management in the tropics: pretexts or red herrings?

Over the last 20 years, transfer of the management of natural resources to local populations has been a major trend in the tropics. Many of these initiatives today incorporate the development of monitoring systems based on Criteria and Indicators (C&I), used to gauge environmental, socio-economic, and institutional consequences over a long period of time. The design of C&I at a local level involves combining scientific expertise with traditional ecological knowledge. There are numerous methods of merging these two branches of knowledge and developing a local monitoring system. The difficulty lies in setting up these local monitoring systems. A review of the literature available demonstrates that the handing over of monitoring systems to local communities has rarely been successful. In almost every case study, when the donor agency initiating the process withdrew, monitoring was either much less intensive or came to a complete stop. Despite this blatant deficiency local monitoring systems constitute an almost compulsory component of any donor-funded program/project dealing with sustainable management of natural resources. In our views, the real implementation of C&I by and for communities can only be achieved if there is a genuine devolution of management power, including responsibilities and benefits, to local stakeholders. Unless they link environmental changes to the communities’ own management decisions, formal participative monitoring systems will continue to fail.

Is growth of soil microorganisms in boreal forests limited by carbon or nitrogen availability?

To study whether the biomass of soil microorganisms in a boreal Pinus sylvestris-Vaccinium vitis-idaea forest was limited by the availability of carbon or nitrogen, we applied sucrose from sugar cane, a C₄ plant, to the organic mor-layer of the C₃–C dominated soil. We can distinguish between microbial mineralization of the added sucrose and respiration of endogenous carbon (root and microbial) by using the C₄-sucrose as a tracer, exploiting the difference in natural abundance of ¹³C between the added C₄-sucrose (¹³C –10.8) and the endogenous C₃–carbon (¹³C –26.6 ). In addition to sucrose, NH₄Cl (340 kg N ha^–1) was added factorially to the mor-layer. We followed the microbial activity for nine days after the treatments, by in situ sampling of CO₂ evolved from the soil and mass spectrometric analyses of ¹³C in the CO₂. We found that microbial biomass was limited by the availability of carbon, rather than nitrogen availability, since there was a 50% increase in soil respiration in situ between 1 h and 5 days after adding the sucrose. However, no further increase was observed unless nitrogen was also added. Analyses of the ¹³C ratios of the evolved CO₂ showed that increases in respiration observed between 1 h and 9 days after the additions could be accounted for by an increase in mineralization of the added C₄–C.     

Is plasma membrane lipid composition defined in the exocytic or the endocytic pathway?

Compared with intracellular membranes, the plasma membrane is rich in cholesterol and sphingomyelin. How does this distinct composition arise? Here David Allan and Karl-Josef Kallen take a critical view of the belief that these lipids arrive at the plasma membrane via vesicular traffic from the Golgi complex and propose instead that they may be accreted in the endocytic recycling pathway.     

Is quantity of protein in barley forms determined by proteins localized in the subaleurone layer?

Barley biotypes from the world collection differ in their storage protein content even till 200 %. This is the first report including results of the research, in which the structure of grains containing different amount of protein was tested to explain this difference. The endosperm was investigated using scanning electron microscopy. The structure of the aleurone layer, storing large quantities of protein, did not differ between the high- and low-protein forms of barley. It has been proven that the large quantities of kernel protein may be stored in some cells of the zone adjacent to the aleurone layer, defined as the subaleurone cells. It has been shown that morphologically uniform kernels of the same plant and even of the same ear can vary greatly with respect to the number of these subaleurone cells. The purpose of the study was an examination of variation in protein structure in single kernels of a fodder, a brewery and in an extra high-protein form of barley as well. Moreover the studies were aimed to detect qualitative differences in the subaleurone protein. Application of mass spectrometry made possible the identification of several kinds of proteins which were present in subaleurne layer of kernels. In the granule-bound protein fraction isolated from the subaleurone type kernels, a much stronger representation of some protein was found, with the molecular mass between 29 and 45 kDa, in comparison with the low-protein kernels. It is supposed, that these protein are isoforms of z-type serpin and B3-hordein.     

Is flight architecture determined by physical constraints or by natural selection?: the case of the midge Chironomus plumosus

Males of the midge Chironomus plumosus fly solely to mate. They maintain station for long periods in moving air. Females patrol in search of males and, after receiving a spermatophore, fly to oviposition sites. The requirements of flight in males and females are therefore fundamentally different. Females are larger than males, on average, so these differences could stem from scaling rules governing the geometry of space. The same explanation might apply to flight differences within the sexes and even to peculiarities of flight architecture in C. plumosus compared to other flying animals. In other words, might flight design be accounted for entirely by mechanical constraints without recourse to natural selection?
To test this hypothesis, the power output of C. plumosu was measured as size-specific muscle mass. Contrary to expectation, little evidence was found of scaling effects in this measure of power. Despite its being among the smallest of animals to fly, C. plumosus turns out to have the largest mass of flight muscle, relative to body size, yet found among animals. Differences both between C. plumosus and other species and within C. plumosus are, in general, more readily accounted for by the requirements of the mating system within the viscous universe encountered by small flying animals. We conclude that it is natural selection rather than mechanical constraint that is the primary influence determining the architecture of flight in this small animal.     

Plant community composition and structural characteristics of an invaded forest in the Galápagos

Non-native species have invaded habitats worldwide, greatly impacting the structure and function of native communities and ecosystems. To better understand mechanisms of invasion impacts and how to restore highly impacted and transformed ecosystems, studies are needed that evaluate invader effects on both biotic communities and structural characteristics. On Santa Cruz Island in Galápagos we compared biotic (plant species richness, diversity, and community composition) and structural (canopy openness, forest height, and leaf litter) characteristics of a relic forest dominated by an endemic and highly threatened tree and a forest dominated by an invasive tree. The forests are located within the historical distribution of the endemic tree, which now occupies only 1% of its original extent. We found that the invaded forest had 42% lower native plant species richness and 17% less plant diversity than the endemic tree dominated forest. Additionally, with the invader there was 36% greater non-native plant species richness, 37% higher non-native plant diversity, and highly dissimilar plant composition when compared to the endemic-dominated forest. Additionally, the invaded forest had a more open and taller tree canopy and greater leaf litter cover than native forest. The presence of the invasive tree and the associated forest structural changes were the primary factors in models that best explained higher non-native diversity in the invaded forest. Our correlational results suggest that an invasive tree has significantly altered plant assemblage and forest structural characteristics in this unique ecosystem. Experiments that remove the invader and evaluate native plant community responses are needed to identify thresholds for practical restoration of this threatened and biologically unique native forest.     

Do trees in urban or ornamental plantings receive more damage by insects than trees in natural forests?

Abstract.

• 1 To determine if trees in urban or ornamental plantings are more susceptible to attack and receive more damage to foliage by herbivores than trees in natural forests, we compared the amount of leaf damage caused by several guilds of insects feeding on seven species of native, broadleaf trees in two geographic locations.
• 2 Total leaf damage did not differ significantly between urban or ornamental and natural forests, although trees in natural forests tended to have slightly higher levels of leaf damage.
• 3 Damage caused by chewing insects was consistently higher on trees in natural forests than in urban or ornamental plantings. All other feeding guilds showed no consistent pattern in levels of damage between the two habitats.
• 4 Total damage levels were highest on canopy trees and lowest on understorey trees.
• 5 These results are inconsistent with the view that trees in urban or ornamental settings are more susceptible to insect attack than trees in natural forests.
• 6 The lower level of foliar damage caused by chewing insects on trees in urban or ornamental plantings may arise because of low rates of dispersal by insects into urban environments, higher levels of plant resistance to insect attack in urban or ornamental plantings, or lower survival rates of herbivorous insects in urban environments.

     

Inputs of seabird guano alter microbial growth,community composition and the phytoplankton–bacterial interactions in a coastal system

Seabird guano enters coastal waters providing bioavailable substrates for microbial plankton, but their role in marine ecosystem functioning remains poorly understood. Two concentrations of the water soluble fraction (WSF) of gull guano were added to different natural microbial communities collected in surface waters from the Ría de Vigo (NW Spain) in spring, summer, and winter. Samples were incubated with or without antibiotics (to block bacterial activity) to test whether gull guano stimulated phytoplankton and bacterial growth, caused changes in taxonomic composition, and altered phytoplankton–bacteria interactions. Alteromonadales, Sphingobacteriales, Verrucomicrobia and diatoms were generally stimulated by guano. Chlorophyll a (Chl a) concentration and bacterial abundance significantly increased after additions independently of the initial ambient nutrient concentrations. Our study demonstrates, for the first time, that the addition of guano altered the phytoplankton–bacteria interaction index from neutral (i.e. phytoplankton growth was not affected by bacterial activity) to positive (i.e. phytoplankton growth was stimulated by bacterial activity) in the low-nutrient environment occurring in spring. In contrast, when environmental nutrient concentrations were high, the interaction index changed from positive to neutral after guano additions, suggesting the presence of some secondary metabolite in the guano that is needed for phytoplankton growth, which would otherwise be supplied by bacteria.     

Is the population turnover of patchy‐distributed annuals determined by dormancy dynamics or dispersal processes?

In species with fragmented distribution, regional turnover dynamics is given by the processes of local population extinction and patch (re)colonization by migrants spreading from neighboring occupied patches. In plants with dormant stages (e.g. seeds) and limited dispersal capacity, regional dynamics based on dispersal processes can be overridden by pseudo-turnover determined by signals inducing or breaking dormancy (e.g. due to changes in habitat quality) resulting in a low importance of habitat configuration and size.
In this study, I investigated the turnover dynamics of 5 annual plant species growing on ant mounds of Lasius flavus over three years. I analyzed whether the grassland-scale dynamics of these annuals is influenced by dispersal processes, or alternatively, by pseudo-turnover of soil seed populations. For that purpose I 1) searched for populations formed from soil seeds only, 2) compared the relative contribution of the soil seed bank and seed rain for population restoration after disappearance from the vegetation and 3) investigated whether colonization and extinction events are affected by patch isolation. I assumed if population turnover was rather a result of the soil seed bank dynamics then spatial effects would be hard to detect.
In spite of the presence of populations formed from soil seed and the relatively more important soil seed bank for potential population reestablishment, turnover dynamics followed the predictions of metapopulation theory. Population appearance was more probable in larger and less isolated patches. Probability of disappearance increased with decrease of population size that was negatively influenced by the patch size and its isolation. These findings indicate dispersal processes to be important in the turnover dynamics and only limited contribution of soil seed populations. Their small effectiveness is probably related to the low chance of recurrent disturbance on the mound surface.     

Is population structure in the European white stork determined by flyway permeability rather than translocation history?

European white stork are long considered to diverge to eastern and western migration pools as a result of independent overwintering flyways. In relatively recent times, the western and northern distribution has been subject to dramatic population declines and country‐specific extirpations. A number of independent reintroduction programs were started in the mid 1950s to bring storks back to historical ranges. Founder individuals were sourced opportunistically from the Eastern and Western European distributions and Algeria, leading to significant artificial mixing between eastern and western flyways. Here we use mitochondrial and microsatellite DNA to test the contention that prior to translocation, eastern and western flyways were genetically distinct. The data show a surprising lack of structure at any spatial or temporal scale suggesting that even though birds were moved between flyways, there is evidence of natural mixing prior to the onset of translocation activities. Overall a high retention of genetic diversity, high N_ef, and an apparent absence of recent genetic bottleneck associated with early 20th century declines suggest that the species is well equipped to respond to future environmental pressures.     

Is the oostegite structure of amphipods determined by their phylogeny or is it an adaptation to their environment?

The oostegites of amphipods attached to peraeopods 2–5 are of two main types — broad with relatively short marginal setae and narrow with long marginal setae. Broad oostegites are found in other peracarids and are considered the primitive type. Amphipods with broad oostegites tend to have smaller eggs than those with narrow oostegites. It is concluded that following the evolution of the major amphipod groups, the oostegites were modified as egg sizes have changed as part of the reproductive strategies of the species within these groups.