Nitrogenase of Klebsiella pneumoniae. Hydrazine is a product of azide reduction.

Klebsiella pneumoniae nitrogenase reduced azide, at 30 degrees C and pH 6.8-8.2, to yield ammonia (NH3), dinitrogen (N2) and hydrazine (N2H4). Reduction of (15N = 14N = 14N)-followed by mass-spectrometric analysis showed that no new nitrogen-nitrogen bonds were formed. During azide reduction, added 15N2H4 did not contribute 15N to NH3, indicating lack of equilibration between enzyme-bound intermediates giving rise to N2H4 and N2H4 in solution. When azide reduction to N2H4 was partially inhibited by 15N2, label appeared in NH3 but not in N2H4. Product balances combined with the labelling data indicate that azide is reduced according to the following equations: (formula: see text); N2 was a competitive inhibitor and CO a non-competitive inhibitor of azide reduction to N2H4. The percentage of total electron flux used for H2 evolution concomitant with azide reduction fell from 26% at pH 6.8 to 0% at pH 8.2. Pre-steady-state kinetic data suggest that N2H4 is formed by the cleavage of the alpha-beta nitrogen-nitrogen bond to bound azide to leave a nitride (= N) intermediate that subsequently yields NH3.     

不同形态N素对水曲柳幼苗生长的影响

在温室内用砂培的方法研究了ＮＯ＾－３－Ｎ、ＮＨ＾＋４－Ｎ及其不同配比对水曲柳（Ｆｒａｘｉｎｕｓ ｍａｎｄｓｈｕｒｉｃａ）幼苗生长的影响。结果表明，水曲柳幼苗在营养液ＮＯ＾－３－Ｎ：ＮＨ＾＋４－Ｎ为７５：２５时生长最好，营养液中ＮＨ＾＋４－Ｎ比例继续增加则生长下降。过量的ＮＨ＾＋４－Ｎ可抑制水曲柳幼苗根系生长，降低幼苗的地下／地上比。营养液中ＮＨ＾＋４－Ｎ比例增加，水曲柳幼苗的净光合速率下降，体内Ｐ     

Electrical penetration graphic waveforms in relation to the actual positions of the stylet tips of Nilaparvata lugens in rice tissue

The stylet penetration behavior of Nilaparvata lugens (Hemiptera: Delphacidae) in rice plants (Oryza sativa) was evaluated through the use of an electrical penetration graph (EPG). To accomplish this, we classified the EPG signals into seven different waveforms, np, N1, N2, N3, N4-a, N4-b, and N5, according to their shapes, amplitudes, and frequencies. The N4-b waveform was always preceded by N3 and N4-a, in that order. Continuous honeydew excretion only occurred during the N4-b period, and the honeydew deposited on a filter paper containing ninhydrin reagent during the N4-b period was stained violet. The tips of the stylets that were severed in the N3, N4-a, and N4-b periods were in the phloem region of rice. Moreover, the flow of plant sap after stylectomy only occurred during the N4-b period. Finally, sucrose was the only carbohydrate component identified when HPLC analysis of the plant sap was conducted. On the other hand, honeydew excretion hardly occurred during the N5 period and the tips of the stylets that were severed during the N5 period were located in the xylem region of rice. Based on the location of the stylets and honeydew excretion, the EPG waveforms for the stylet penetration behaviors of N. lugens were assigned to the following groups; np: non-penetration of stylets, N1: penetration initiation, N2: salivation and stylet movement, N3: an extracellular activity near the phloem region, N4-a: an intracellular activity in phloem region, N4-b: phloem sap ingestion, and N5: activity in the xylem region.     

Direct-acting mutagenicity of N4-aminocytidine derivatives bearing alkyl groups at the hydrazino nitrogens.

To investigate the mechanism of N4-aminocytidine-induced mutagenesis, N'-alkyl-N4-aminocytidines and N4-alkyl-N4-aminocytidines were prepared and their mutagenicity on bacteria were assayed. N'-Methyl-N4-aminocytidine, N'-(2-hydroxyethyl)-N4-aminocytidine and N',N'-dimethyl-N4-aminocytidine showed direct-acting mutagenicity on S. typhimurium TA100 and E. coli WP2 uvrA, tester strains that are sensitive to base-pair substitutions. In contrast, N4-methyl-N4-aminocytidine, N4-(2-hydroxyethyl)-N4-aminocytidine and N4,N'-dimethyl-N4-aminocytidine were not mutagenic on these bacteria. Since N'-methyl-N4-aminocytidine does not form hydrazones, the possibility that N4-aminocytidine causes mutation due to its reactivity with carbonyl compounds has been excluded. Furthermore, the fact that only those alkyl N4-aminocytidines having a hydrogen on the nitrogen at position 4 are mutagenic is consistent with the previously proposed mechanism in which the tautomerization between the amino and the imino forms of N4-aminocytosine allowing an ambiguous base pairing is the cause of the mutagenesis.     

Syntheses and Herbicidal Activities of Dithiocarbamates

Several dithiocarbamates were synthesized and their herbicidal activities to radish and barnyardgrass were examined. Some benzyl N, N-dialkyldithiocarbamates such as N-methyl-N-ethyl-, N-methyl-N-n-propyl-, N, N-diethyl- and N, N-diisopropyl-dithiocarbamates showed high activity to these plants, but N-monoalkyl-, N, N-diaryl- and N, N-diaralkyl-dithio- carbamates were not so active. Some substituted benzyl N, N-dialkyldithiocarbamates such as 4-dimethylaminobenzyl N-methyl-N-ethyldithiocarbamate and 4-methoxybenzyl N, N-diethyldithiocarbamate showed high activity to broad-leaved plants. Substituted benzyl N, N-dialkyldithiocarbamates except 4-cyanobenzyl N, N-diisopropyldithiocarbamate, however, were less active to graminaceous plants.     

思茅松毛虫四龄幼虫肠道好氧细菌的ARDRA分析及鉴定

从思茅松毛虫Dendrolimu kikuchii Matsumura4龄幼虫肠道环境中分离、纯化、培养,获得11株好氧细菌菌株。以细菌基因组DNA为模板,用细菌通用引物(27f、1492r)对模板进行PCR扩增,并用4种限制性内切酶HaeⅢ、HindⅢ、HinfⅠ、TaqⅠ对PCR产物进行ARDRA(amplified rDNA restriction analysis)多态性分析,在84%的相似水平上可分成6大类群,多样性丰富。对6大类群的代表菌株进行16SrDNA序列测定,分析表明:分离到的11株好氧细菌中4N05、4N08和4N11归属克雷伯氏杆菌属(Klebsiellasp.),4N02归属Lysinibacillus属;4N03和4N09确定到种,分别是γ-变形杆菌(Gamma proteobacterium)和枯草芽孢杆菌(Bacillus subtilis strain);4N04、4N06、4N07和4N01、4N10也可以确定到种,其中前3株是短短芽孢杆菌(Brevibacillus brevisstrain),后2株是沼泽短芽孢杆菌(Brevibacillus limnophilusstrain),并且这5株菌都归属短芽孢杆菌属(Brevibacillus sp.)。通过研究,既可以为松毛虫的生物防治提供微生态理论依据,又丰富了微生物资源库。     

Mechanism of inhibition of mammalian tumor and other thymidylate synthases by N4-hydroxy-dCMP, N4-hydroxy-5-fluoro-dCMP, and related analogues

N4-Hydroxy-dCMP (N4-OH-dCMP), N4-methoxy-dCMP (N4-OMe-dCMP), and their 5-fluoro congeners (syntheses of which are described) were all slow-binding inhibitors of Ehrlich carcinoma thymidylate synthase (TS), competitive with respect to dUMP, and had differing kinetic constants describing interactions with the two TS binding sites. N4-OH-dCMP was not a substrate (no dihydrofolate produced; no tritium released with 5-3H-labeled molecule), and its inactivation of TS was methylenetetrahydrofolate-dependent, hence mechanism-based, with arrest of a step posterior to addition of cofactor and blocking abstraction of the C(5) hydrogen. Ki values for N4-OH-dCMP and its 5-fluoro analogue were in the range 10(-7) - 10(-8) M, 2-3 orders of magnitude higher for the corresponding N4-OMe analogues. The 5-methyl analogue of N4-OH-dCMP was 10(4)-fold less potent, pointing to the anti rotamer of the imino form of exocyclic N4-OH, relative to the ring N(3), as the active species. This is consistent with weaker slow-binding inhibition of the altered enzyme from 5-FdUrd-resistant, relative to parent, L1210 cells by both FdUMP and N4-OH-dCMP, suggesting interaction of both N4-OH and C(5)-F groups with the same region of the active center. Kinetic studies with purified enzyme from five sources, viz., Ehrlich carcinoma, L1210 parental, and 5-FdUrd-resistant cells, regenerating rat liver, and the tapeworm Hymenolepis diminuta, demonstrated that addition of a 5-fluoro substituent to N4-OH-dCMP increased its affinity from 2- to 20-fold for the enzyme from different sources.(ABSTRACT TRUNCATED AT 250 WORDS)     

Reactions of plant copper/topaquinone amine oxidases with N6-aminoalkyl derivatives of adenine

Plant copper/topaquinone-containing amine oxidases (CAOs, EC 1.4.3.6) are enzymes oxidising various amines. Here we report a study on the reactions of CAOs from grass pea (Lathyrus sativus), lentil (Lens esculenta) and Euphorbia characias, a Mediterranean shrub, with N6-aminoalkyl adenines representing combined analogues of cytokinins and polyamines. The following compounds were synthesised: N6-(3-aminopropyl)adenine, N6-(4-aminobutyl)adenine, N6-(4-amino-trans-but-2-enyl) adenine, N6-(4-amino-cis-but-2-enyl) adenine and N6-(4-aminobut-2-ynyl) adenine. From these, N6-(4-aminobutyl) adenine and N6-(4-amino-trans-but-2-enyl)adenine were found to be substrates for all three enzymes (Km approximately 10(-4)M). Absorption spectroscopy demonstrated such an interaction with the cofactor topaquinone, which is typical for common diamine substrates. However, only the former compound provided a regular reaction stoichiometry. Anaerobic absorption spectra of N6-(3-aminopropyl)adenine, N6-(4-amino-cis-but-2-enyl)adenine and N6-(4-aminobut-2-ynyl)adenine reactions revealed a similar kind of initial interaction, although the compounds finally inhibited the enzymes. Kinetic measurements allowed the determination of both inhibition type and strength; N6-(3-aminopropyl)adenine and N6-(4-amino-cis-but-2-enyl)adenine produced reversible inhibition (Ki approximately 10(-5) - 10(-4) M) whereas, N6-(4-aminobut-2-ynyl)adenine could be considered a powerful inactivator.     

Conformational restraint is a critical determinant of unnatural nucleotide recognition by protein kinases

This report describes the synthesis of N(4)-(benzyl) AICAR triphosphate, a conformationally restrained analogue of N(4)-(benzyl) ribavirin triphosphate. Both of these nucleotides were evaluated as phosphodonors for wild-type p38MAP kinase and T106G p38MAP kinase, a designed mutant with expanded nucleotide specificity. The conformationally restrained nucleotide, N(4)-(benzyl) AICAR triphosphate, is orthogonal to (not accepted as a substrate by) wild-type p38MAP kinase, in contrast to N(4)-(benzyl) ribavirin triphosphate. Furthermore, N(4)-(benzyl) AICAR triphosphate, is accepted as a substrate by T106G p38MAP kinase, in contrast to N(4)-(benzyl) ribavirin triphosphate. We hypothesize that the presence of an internal hydrogen bond in N(4)-(benzyl) AICAR and its absence in N(4)-(benzyl) ribavirin triphosphate is the main determinant for their differing structure-activity relationships.     

Synthesis of 4-triazolopyrimidinone nucleotide and its application in synthesis of 5-methylcytosine-containing oligodeoxyribonucleotides.

5'-0-Dimethoxytritylthymidine (2) was phosphorylated and base-modified simultaneously to yield the 4-triazolopyrimidinone nucleotide (3). Coupling between (3) and other common deoxyribonucleotides gave a fully protected nonamer (4). Deblocking under different conditions yielded the nonamer as phosphodiester with concomitant conversion of 4-triazolopyrimidinone to 5-methylcytosine (aqueous ammonia) or thymine (N1,N1,N3,N3-tetramethyl-guanidinium syn-4-nitrobenzaldoximate solution).     

Synthesis,conformation, and antiviral activity of 5-methoxymethyl-2'-deoxycytidine analogs

Analogs of 5-methoxymethyl-2'-deoxycytidine, MMdCyd (1) by substitution at N4 were synthesized to impart resistance against deamination. The anti HSV-1 activity and solution conformation of analogs were determined. N4-Butanoyl-MMdCyd (10) was a potent inhibitor of HSV-1 replication while N4-hexanoyl-MMdCyd (11), N4-propanoyl-MMdCyd (9) and N4-acetyl-MMdCyd (8) had good activity against HSV-1 replication. All other analogs were devoid of activity against HSV-1.     

Role of N-linked glycans in the functions of hepatitis C virus envelope glycoproteins

Hepatitis C virus (HCV) encodes two viral envelope glycoproteins. E1 contains 4 or 5 N-linked glycosylation sites and E2 contains up to 11, with most of the sites being well conserved, suggesting that they play an essential role in some functions of these proteins. For this study, we used retroviral pseudotyped particles harboring mutated HCV envelope glycoproteins to study these glycans. The mutants were named with an N followed by a number related to the relative position of the potential glycosylation site in each glycoprotein (E1N1 to E1N4 for E1 mutants and E2N1 to E2N11 for E2 mutants). The characterization of these mutants allowed us to define three phenotypes. For the first group (E1N3, E2N3, E2N5, E2N6, E2N7, and E2N9), the infectivities of the mutants were close to that of the wild type. The second group (E1N1, E1N2, E1N4, E2N1, and E2N11) contained mutants that were still infectious but whose infectivities were reduced to <50% that of the wild type. The third group (E2N2, E2N4, E2N8, and E2N10) contained mutants that had almost totally lost infectivity. The absence of infectivity of the E2N8 and E2N10 mutants was due to the lack of incorporation of the E1E2 heterodimer into HCVpp, which was due to misfolding of the heterodimer, as shown by immunoprecipitation with conformation-sensitive antibodies and by a CD81 pull-down assay. The absence of infectivity of the E2N2 and E2N4 mutants indicated that these two glycans are involved in controlling HCV entry. Altogether, the data indicate that some glycans of HCV envelope glycoproteins play a major role in protein folding and others play a role in HCV entry.     

Characterization of the iron-sulfur cluster N7 (N1c) in the subunit NuoG of the proton-translocating NADH-quinone oxidoreductase from Escherichia coli

The proton-pumping NADH-quinone oxidoreductase from Escherichia coli houses nine iron-sulfur clusters, eight of which are found in its mitochondrial counterpart, complex I. The extra putative iron-sulfur cluster binding site with a CXXCXXXCX(27)C motif in the NuoG subunit has been assigned to ligate a [2Fe-2S] (N1c). However, we have shown previously that the Thermus thermophilus N1c fragment containing this motif ligates a [4Fe-4S] (Nakamaru-Ogiso, E., Yano, T., Ohnishi, T., and Yagi, T. (2002) J. Biol. Chem. 277, 1680-1688). In the current study, we individually inactivated four sets of the iron-sulfur binding motifs in the E. coli NuoG subunit by replacing all four ligands with Ala. Each mutant subunit, designated Delta N1b, Delta N1c, Delta N4, and Delta N5, was expressed as maltose-binding protein fusion proteins. After in vitro reconstitution, all mutant subunits were characterized by EPR. Although EPR signals from cluster N1b were not detected in any preparations, we detected two [4Fe-4S] EPR signals with g values of g(x,y,z) = 1.89, 1.94, and 2.06, and g(x,y,z) = 1.91, 1.94, and 2.05 at 6-20 K in wild type, Delta N1b, and Delta N5. The former signal was assigned to cluster N4, and the latter signal was assigned to cluster N1c because of their disappearance in Delta N4 and Delta N1c. Confirming that a [4Fe-4S] cluster ligates to the N1c motif, we propose to replace its misleading [2Fe-2S] name, N1c, with "cluster N7." In addition, because these mutations differently affected the assembly of peripheral subunits by in trans complementation analysis with the nuoG knock-out strain, the implicated structural importance of the iron-sulfur binding domains is discussed.     

Isolation and characterization of CHO cell mutants with altered asparagine synthetase.

Two asparagine auxotrophic mutants (N3, N4) were isolated from the Gat- strain of Chinese hamster ovary cells, using a selection procedure modified from that of Goldfarb et al. (1). The defect in these mutants is due to a deficiency in asparagine synthetase activity. N3, in particular, had no measurable enzyme activity. Complementation analysis by PEG-mediated cell fusion showed that the auxotrophic phenotype behaved as a recessive trait; complementation was obtained between N3 or N4 and the pseudoauxotroph, Asn3, which has a temperature-sensitive asparagyl-tRNA synthetase activity. Revertants obtained by plating N3 or N4 in asparagine-free medium had about normal levels of asparagine synthetase activity and were produced with a probability of about 10(-6) per cell per generation. Three particular revertants of N3 and one revertant of N4 were shown to have asparagine synthetase activities that were different in thermolability from that of the wild type. This observation is consistent with the suggestion that N3 and N4 have defective structural genes rather than defective regulatory genes for asparagine synthetase.     

较长时间内~(15)N标记的氨态氮和硝态氮在小嵩草草甸中的运移规律(英文)

运用15N稳定性同位素技术,对15N标记的硝酸盐和铵盐在输入小嵩草(KobresiapygaeaC.B.Clarke)草甸11~13个月后的运移规律进行了研究。在经历11~13个月后,进入无机氮库中的15N很少,一般不超过所输入氮素的1%,而较多的15N为土壤有机质、土壤微生物和植物所固持。NO3--15N和NH4 -15N在小嵩草草甸中的运移规律差异很大。在11、12和13个月后,NO3--15N的总恢复率分别为92.83%、92.64%和79.96%;而NH4 -15N的则分别为49.6%、63.33%和66.22%。两者的差异在土壤有机质、土壤微生物和植物等库之间的分配中更加明显。输入NO3--15N时在11、12个月后植物所固持的15N最多,而土壤微生物和土壤有机质所固持的15N比较接近,而在13个月后,土壤有机质和植物所固持的15N接近,而土壤微生物所固持的15N下降许多;当输入NH4 -15N,土壤有机质所固持的15N比植物和土壤微生物所固持的都多,而且植物所固持的15N比较稳定,而土壤微生物所固持的15N则有较大变化。这表明在较长的时间内嵩草草甸对NO3-和NH4 的固持能力是不一样的。     

无机氮对土壤甲烷氧化作用的影响

无机氮输入(施氮肥和大气N沉降)对土壤CH4氧化作用的影响取决于甲烷氧化菌类型、输N种类和量以及土壤状况．这种作用既有抑制作用,又有刺激作用,但文献报道的抑制作用多于刺激作用,NH4^ 对CH4氧化的抑制作用多于NO3^-．随着全球N输入的增加,应在广泛的土壤类型和气候带观测和评价无机氯对土壤CH4氧化作用的影响．无机氮对土壤CH4氧化的抑制作用表现为立即或直接抑制、延迟抑制以及缺乏抑制等多种模式．尽管目前—些学者用酶基质竞争、增高的阈值、盐作用和离子交换、N转化率和N浓度等来解释抑制现象,但抑制机理依旧不完全清楚．因此,抑制机理是本领域未来研究的主要目标之一．