Soil factors affecting patchiness in community composition of heavy metal-contaminated areas of Western Europe

The vegetation at various sites within two separate areas (Mechernich and Aachen) of the Eifel Mountains, Germany/Belgium, both characterized by elevated concentrations of heavy metals in their soils, was surveyed in order to investigate the relationships between soil chemical attributes and floristic composition. In both areas, the typical heavy metal communities can form distinct zones, clearly separated from the surrounding heavy metal-sensitive vegetation. However, an intergrading of heavy metal-tolerant and-sensitive vegetation types is not uncommon and such overlaps can occupy large areas. In Mechernich, soil toxicity is primarily determined by the effects of lead, which is best expressed in terms of the Pb/Ca ratio rather than the absolute levels of this metal in the soil. Soils of heavy metal-sensitive vegetation types have a low Pb/Ca ratio, whereas it is considerably higher in areas supporting heavy metal vegetation. Zinc appears to exert little influence on the floristic composition of the investigated vegetation types. In Aachen, zinc is the predominant heavy metal determining vegetation development. Absolute zinc levels of soils do not accurately reflect zinc toxicity. Analogous to the role of the Pb/Ca ratio in the Mechernich area, the Zn/Ca ratio not only separates heavy metal-sensitive and highly tolerant vegetation units, but also gives a good indication of the gradient operating between the two vegetation types. Lead is probably only of local importance in influencing species composition.     

Relative importance of biotic and abiotic factors affecting bacterial abundance in Lake Biwa: an empirical analysis

To determine the relative importance of factors affecting bacterial abundance in Lake Biwa, correlation and multiple regression analyses were performed with relevant biotic and abiotic variables. Data used in the analyses were collected weekly from April 1997 to June 1998 at a pelagic site in the north basin. The bacterial abundance ranged from 1 to 7 × 10⁶ cells ml⁻¹, and its spatio-temporal pattern was virtually identical to that in previous studies conducted 12–15 years ago. In the surface layer (0–12.5 m), bacterial abundance was significantly correlated with water temperature and with protozoan and metazoan grazers, but not with chlorophyll a and nutrient concentrations. The results suggest that loss factors rather than growth factors are more important in determining bacterial abundance in this lake. However, grazing effects on bacterial abundance differed among zooplankton. Bacterial abundance correlated negatively with phagotrophic nanoflagellates (PNF) and Daphnia, but positively with Eodiaptomus. Thus, PNF and Daphnia act to reduce the bacterial abundance, while Eodiaptomus acts to stimulate. In contrast, these biotic factors did not explain changes in bacterial abundance in the middle (12.5–25 m) and deep (>25 m) layers. Instead, the bacterial abundance in the deep layer was highly correlated with vertical mixing regimes, suggesting that bacterial abundance was directly or indirectly affected by abiotic factors. These results indicate that bacterial abundance in Lake Biwa was regulated by different factors at different depths. Received: February 8, 2000 / Accepted: August 29, 2000     

Use of yeast as a model system to investigate protein conformational diseases

Protein conformational diseases arise when a cellular protein adopts an aberrant shape that either directly or indirectly alters the physiology of its host cell. Notable conformational diseases include cystic fibrosis, Huntington’s disease, the prion-related diseases, Alzheimer’s disease, and antitrypsin deficiency. In principle, the severity and progression of conformational diseases can be altered by cellular factors that recognize and attempt to ameliorate the harmful effects of the disease-causing, misshapen protein. To better define the mechanistic underpinnings of cellular factors that mediate quality control, and to understand why a single misfolded protein can impact cell viability, specific proteins that cause each of the diseases listed above have been expressed in a model eukaryote, the yeast Saccharomyces cerevisiae. In this review, we describe what has been learned from these studies, and speculate on future uses of yeast expression systems.     

Collapse of a Planktothrix agardhii perennial bloom and microcystin dynamics in response to reduced phosphate concentrations in a temperate lake

Planktothrix agardhii dynamics, microcystin concentration and limnological variables were monitored every 2 weeks for 2 years (2004-2006) in a shallow hypereutrophic artificial lake (BNV, Viry-Chatillon, France). Time-series analysis identified two components in the P. agardhii biomass dynamics: (1) a significant decreasing trend in P. agardhii biomass (65% of the overall variance) and (2) a residual component without significant seasonal periodicity. A path-analysis model was built to determine the main factors controlling the P. agardhii dynamics over the period studied. The model explained 66% of P. agardhii biomass changes. The decreasing trend in P. agardhii biomass was significantly related to a decrease in the PO4(3-) concentration resulting from an improved treatment of the incoming watershed surface water. The residual component was related to zooplankton dynamics (cyclopoid abundances), supporting the hypothesis of a top-down control of P. agardhii, but only when the biomass was low. Forty-nine percent of the variability in the microcystin (MC) concentration (min:<0.1 microg equivalent MC-LR L(-1); max: 7.4 microg equivalent MC-LR L(-1)) could be explained by changes in the P. agardhii biomass. The highest toxin content was observed when P. agardhii biomass was the lowest, which suggests changes in the proportion of microcystin-producing and -nonproducing subpopulations and/or the physiological status of cells.     

Meteorological factors affecting the bloom of Anabaenopsis raciborskii Wolosz. (Cyanophyta:Hormogonales) in the shallow Lake Balaton, Hungary

There was a heavy bloom of a nitrogen-fixing blue-green algaAnabaenopsis raciborskii Wolosz. in Lake Balaton in September-October1982. The authors studied the dynamics of the phyto- and bacterio-plankton of the lake by daily and weekly samplings. Some meteorologicalfactors were also considered. It could be concluded that thecauses of the bloom were accumulating nutrients being enrichedjust before the bloom-period suddenly washed into the lake byheavy rains, followed by windless warm days (water temperatures26–29°C). An expressed correlation between bacterio-and phytoplankton indicates their close trophic relationship.     

Ciona intestinalis notochord as a new model to investigate the cellular and molecular mechanisms of tubulogenesis

Biological tubes are a prevalent structural design across living organisms. They provide essential functions during the development and adult life of an organism. Increasing progress has been made recently in delineating the cellular and molecular mechanisms underlying tubulogenesis. This review aims to introduce ascidian notochord morphogenesis as an interesting model system to study the cell biology of tube formation, to a wider cell and developmental biology community. We present fundamental morphological and cellular events involved in notochord morphogenesis, compare and contrast them with other more established tubulogenesis model systems, and point out some unique features, including bipolarity of the notochord cells, and using cell shape changes and cell rearrangement to connect lumens. We highlight some initial findings in the molecular mechanisms of notochord morphogenesis. Based on these findings, we present intriguing problems and put forth hypotheses that can be addressed in future studies.     

Use of a novel genetic mouse model to investigate the role of folate in colitis-associated colon cancer

Inflammatory bowel disease (IBD) patients are at high risk for developing folate deficiency and colon cancer. Since it is difficult to study the subtle global and gene-specific epigenetic mechanisms involved in folate-mediated tumor initiation and promotion, we have generated genetically modified mouse models by targeting the reduced folate carrier (RFC1) and folate-binding protein (Folbp1) genes. The transgenic mice were fed semi-purified diets for 8 weeks containing either normal (2 mg) or deficient (0.1 mg folate/kg diet) levels of folate. Compound heterozygous mice (Folbp1(+/-); RFC1(+/-)) fed an adequate folate diet exhibited a reduction in plasma folate concentrations compared to heterozygous (Folbp1(+/-)) and littermate wild-type mice (P<.05). In contrast, no differences were observed in colonic mucosa. Consumption of a low folate diet significantly reduced (three- to fourfold) plasma and tissue folate levels in all animal models, although plasma homocysteine levels were not altered. In order to elucidate the relationship between folate status and inflammation-associated colon cancer, animals were injected with azoxymethane followed by dextran sodium sulphate treatment in the drinking water. Mice were fed a normal folate diet and were terminated 5 weeks after carcinogen injection. The number of high multiplicity aberrant crypt foci per centimeter of colon was significantly elevated (P<.05) in compound Folbp1(+/-); RFC1(+/-) (3.5+/-0.4) mice as compared to Folbp1(+/-) (1.9+/-0.3) and wild-type control mice (1.1+/-0.1). These data demonstrate that the ablation of two receptor/carrier-mediated pathways for folate transport increases the risk for developing inflammation-associated colon cancer.     

Pattern of species dominance and factors affecting community composition in areas deforested due to air pollution

Vegetation of mountain areas affected by SO₂ pollution (Kruné hory Mts., Czech Republic) was analysed using multivariate methods. Communities with prevailing species Calamagrostis villosa, a rhizomatous grass expanding into deforested sites, were sampled by Braun-Blanquet relevé method. Canonical correspondence analysis was used to assess the effect of environmental variables (soil removal, deforestation, and shading). To test the effects of light, moisture, soil acidity and nitrogen, mean sample indicator values were correlated a posteriori with sample axes on ordination scores. Light, soil acidity, moisture, and site history (in terms of past deforestation and soil removal applied in reclamation procedures) were found to be the main factors responsible for the community composition. Nitrogen level had not a significant effect on the community composition. When analyzing the whole data set, i.e. including also remnants of natural spruce forests, light was the factor affecting at most the composition of communities. Within the bare spot vegetation, if treated separately, the highest variation was found along the soil acidity/moisture gradient. The effect of soil removal was only obvious at early successional stages. Species diversity increased with moisture and decreased with soil acidity. Species exhibiting S- and/or R-strategy are successful on extremely acid soils whereas forbs present in bare spots appear to be supported by disturbances.     

Photoinhibition of colonial and unicellular <Emphasis Type="Italic">Microcystis</Emphasis> cells in a summer bloom in Lake Taihu

To evaluate the photoinhibition of colonial and unicellular cells of Microcystis aeruginosa under natural conditions, the maximum and effective quantum yields of photosystem II were measured from variable chlorophyll a fluorescence in samples from Lake Taihu during a summer bloom from June 19 to 21, 2006. Diurnal changes in the photoinhibition of Microcystis cells incubated immediately below the surface in clear bottles for 30 min and in situ samples under natural conditions were measured. At solar noon during the three days, the mean values of maximum quantum yield (F _v/F _m) and effective quantum yield (ΔF/F _m′) for unicellular cells (F _v/F _m = 0.15, ΔF/F _m′ = 0.10) were lower than those for colonial cells (F _v/F _m = 0.25, ΔF/F _m′ = 0.15). For in situ samples, the values of F _v/F _m and ΔF/F _m′ for colonial cells at solar noon on the three days (F _v/F _m 0.30, 0.25, 0.29; ΔF/F _m′ 0.24, 0.21, 0.22) were also higher than those of unicellular cells (F _v/F _m 0.26, 0.18, 0.25; ΔF/F _m′ 0.15, 0.11, 0.14). The results indicate that colony formation has a protective effect on Microcystis cells by reducing the occurrence of photoinhibition under high light intensities.     

Use of a generalized linear mixed model to reduce excessive heterogeneity in petroleum spray oil bioassay data

High heterogeneity (variance) is a consistent and significant problem in petroleum spray oil derived bioassay data. It can mask small statistical differences sought by researchers in relative toxicity or potency analysis. To compensate for excessive heterogeneity, researchers often use very large sample sizes to improve statistical accuracy. We present a statistical method of modeling heterogeneity extending the conventional probit model by adding random effects to it. We illustrate this by reanalyzing 26 of our own published experiments. Twelve of these had excessive heterogeneity that was significantly reduced in ten cases by including random replicate effects with or without random slopes. Five were further improved by allowing a nonlinear (spline) response. The result was tighter confidence intervals for the estimates of lethal dose.     

Use of additive models to represent trends in a barley field trial

Even when a field experiment has been designed with care, subsequent examination of the plot values may reveal additional unforeseen trends. In this paper we examine data from a barley pathology field trial and show that additive models provide a flexible representation of environmental trends, in one or two dimensions. Such models smooth out noise in the observed data, rather than fit an equation specified in advance. This approach tends to increase the precision of treatment comparisons relative to a classical analysis of variance. We recommend the use of residual plots to explore experimental data for underlying trends, and additive models to display these trends and estimate treatment effects.     

Responses of benthic community metabolism to abiotic factors in a mountain river in southern Poland

Seasonal and longitudinal metabolic trends in benthic communities were studied in the five orders of a natural mountain river (the Stradomka) in southern Poland. The method of oxygen change of rocky substrata in chambers was applied. Metabolic data were compared with abiotic (light regime, channel geomorphology and stream hydrology), and water chemical variables. A tendency of downstream increase in gross production and community respiration was observed between 1st and 4th stream orders. The highest values of GP (0.94 g C m^-2 24 h ^-1) and CR (1.12 g C m^-2 24 h ^-1) were observed in the middle Stradomka course (3–4 orders) in spring. A distinct negative NDM (heterotrophy) of the benthic community was measured in autumn and spring. During winter NDM was almost constant and oscillated around zero. The P/R ratio changed according to season and fluctuated between heterotrophy (P/R < 1) and autotrophy (P/R > 1). In general, heterotrophy prevailed in the study system (except 5th order). A marked shift in P/R between 4th and 5th stream orders confirms the prediction included in the RCC. Water temperature and PAR accounted for 56% in GP variability, whereas CR and NDM were not related to these variables. The combined variables (PAR and PO₄–P) attributed to 69% in GP variability. The set of chemical factors was less related to Stradomka metabolic data. These results suggest that metabolic processes in this mountain river remarkably depend on physical variables (solar radiation, altitude, water temperature and conductivity). Metabolic parameters were similar to other geographical mountain systems. This revised version was published online in July 2006 with corrections to the Cover Date.     

基于GAM模型的延河流域主要草地物种空间分布及其与环境的关系

对延河流域145个样地的主要草地物种空间分布和以GIS空间分析获取的该区12种主要环境因子之间的关系进行了定量研究,同时应用广义可加模型（GAM）分析了单物种的地理分布与环境梯度的关系。结果表明：影响延河流域典型草地物种百里香（Thymus mongolicus）空间分布的主要环境因子包括年均降雨、年均温度、蒸发量,其次是温度季节比,再次是坡位与坡度;主要草地物种与环境的关系非常密切,每个物种都存在自己特定的环境梯度空间中,并以不同的方式在空间上响应不同的环境因子;在流域尺度上利用GAM模型进行单物种和环境关系研究是可行的,能较好地描述物种空间分布和环境因子之间的关系。     

Seasonal Variations in Chlorophyll a Concentrations in Relation to Potentials of Sediment Phosphate Release by Different Mechanisms in a Large Chinese Shallow Eutrophic Lake (Lake Taihu)

The relationship between chlorophyll a and fractionation of sediment phosphorus, inorganic phosphate-solubilizing bacteria (IPB), and organic phosphate-mineralizing bacteria (OPB) was evaluated in a large Chinese shallow eutrophic lake (Lake Taihu) and its embayment (Wuli Bay). At the three study sites, the increase of chlorophyll a concentrations in April paralleled those of the iron bound phosphate accounting for major portion of sediment inorganic phosphate, and in June significantly higher OPB and IPB numbers (especially OPB) in sediment were main contributors to the peaks of chlorophyll a concentration. Even though IPB peaked from February to June, it should serve as an unimportant P source due to the irrelevancy with chlorophyll a and soluble reactive phosphorus (SRP). By contrast, at the other site in the embayment, the calcium-bound phosphate was predominant and solid, which was difficult to be released, and neither IPB nor OPB were detectable in the sediment, indicating weak potential for phosphorus release from the sediment, which was reflected in the small seasonal variation in SRP concentration in water column. Hence, the extents to which the three general mechanisms behind phosphate release from sediment (desorption of iron bound phosphate, solubilization by IPB and enzymatic hydrolysis by OPB) operated were different depending on seasons and sites in Lake Taihu, they may jointly drive phosphate release and accelerate the eutrophication processes.     

Using a DNA microarray to investigate the distribution of insect virulence factors in strains of photorhabdus bacteria

Photorhabdus is an insect-pathogenic bacterium in which oral toxicity to insects is found in two distinct taxonomic groups. Using a DNA microarray and comparative genomics, we show that oral toxicity is associated with toxin complex genes tcaABC and that this locus can be mobilized or deleted within different strains.     

Neural Differentiation of Mouse Neural Stem Cells as a Tool to Assess Developmental Neurotoxicity of Drinking Water in Taihu Lake

Biological Trace Element Research - The purpose of this study was to evaluate the protective effect of Du-Zhong cortex extract (DZCE) on lead acetate-induced bone loss in rats. Forty female...