Characterization of Colletotrichum kahawae Isolates Causing Coffee Berry Disease in Angola

Coffee Berry Disease, caused by Colletotrichum kahawae, is a major limitation for Arabica coffee cultivation in Africa and for which genetic control is only partially effective. As part of the effort to re‐launch coffee cultivation in Angola, our aim was to study the diversity of this pathogen and so contribute to more effective breeding for disease resistance. A collection of 30 C. kahawae isolates showed limited diversity in genetic and colony characters. However, some isolates are distinct, suggesting that breeding for disease resistance in Angola should be dependent on an adequate knowledge of the diversity of local and neighbouring C. kahawae isolates. Analysis of C. kahawae nrDNA nucleotide sequences showed distinct lineages clustering within the broad diversity of C. gloeosporioides, prompting further studies aimed at understanding the origin and pathogenic specialization of C. kahawae.     

Reaction of Some Coffea arabica Genotypes to Strains of Colletotrichum kahawae, the Cause of Coffee Berry Disease

Pathogenicity tests were performed on 11 genotypes of Coffea arabica using single‐isolate suspensions of Colletotrichum Kahawae obtained from 90 monoconidial isolates. The objective of this study was to estimate the proportion of pathogenic variation corresponding 10 differences in aggressiveness and virulence (races). A large part of the variation in the pathogen population was due to aggressiveness. The differential effects were too small to suggest conclusively that races exist. This paper discusses the possible causes for the observed small differential interaction and suggests breeding strategies that not only prevent possible adaptation of the pathogen to resistant varieties but also limit variation for resistance due to differences in aggressiveness of the pathogen.     

Tolerance in Isolates of Colletotrichum coffeanum to Prochloraz-Mn in Kenya

Coffee berry disease, caused by Colletotrichum coffeanum is a serious disease of Coffea arabica in Kenya. Control of this disease is achieved mainly through the use of fungicides which currently include chlorothalonil and prochloraz-Mn (Octave). Fungicide resistance in C. coffeanum to benzimidazoles has been well documented. Isolates of C. coffeanum highly sensitive to prochloraz-Mn have been shown to acquire tolerance to high levels of prochloraz-Mn in culture. These isolates were able to grow and sporulate in malt extract agar (MEA) amended with 250 μg ml^-1 prochloraz-Mn. The prochloraz-Mn tolerant isolates of C. coffeanum showed low level of tolerance to benomyl. The benomyl tolerant isolates of C. coffeanum equally showed low level of tolerance to prochloraz-Mn. The prochloraz-Mn and benomyl tolerant and sensitive isolates were found to be highly pathogenic and induced sporulating lesions on seedlings and berries of coffee cv. SL 28 whichis, very susceptible to C. coffeanum. Mixed inoculation tests using prochloraz-Mn and benomyl tolerant isolates and prochloraz-Mn tolerant and sensitive isolates of C. coffeanum showed that the prochloraz-Mn tolerant isolate was competitive.     

Strains of Colletotrichum coffeanum, the causal agent of coffee berry disease, tolerant to benzimidazole compounds in Kenya

The detection of Colletotrichum coffeanum tolerant to methyl ester of benzimidazole 2-carbamic acid (carbendazim) and a related benzimidazole compound, cypendazole, followed increases in levels of coffee berry disease observed on Coffea arabica in experimental plots sprayed for 2 yr with these compounds. Sporulation by the pathogen on naturally infected berries removed from carbendazim-, cypendazole- or benomyl-sprayed plots was not checked by a further application of 0–05 % (a.i.) of any of the compounds. Nearly all the isolates from these berries were capable of some growth on agar media containing 1000 ppm (a.i.) of either carbendazim or cypendazole. However, only a few could tolerate 1000 ppm of benomyl and the inability of this compound to reduce sporulation on berries infected with tolerant strains was presumably due to its rapid conversion to carbendazim within the host tissue. Less than 1 ppm of carbendazim, cypendazole or benomyl was needed to give 50% inhibition of conidia of the normal strain. Against the most tolerant strains, however, the LD 50 was > 100 ppm of carbendazim and about 30 ppm of benomyl. Whether isolated from unsprayed or benzimidazole-sprayed plots, all isolates of Colletotrichum acutatum, a saprophytic cohabitant of lesions initiated on berries by C. coffeanum, showed the highest degree of tolerance to benzimidazole compounds. No tolerance of either fungus to the ‘conventional’ fungicide captafol was detected.     

Isolation and Molecular Identification of Colletotrichum gloeosporioides Causing Brown Spot Disease of Camellia oleifera in Hainan of China

Colletotrichum gloeosporioides is an important pathogen that causes widespread brown spot disease on the leaves of the tea‐oil tree (Camellia oleifera) in China. This study was designed to isolate, identify and characterize this fungal pathogen, based on morphology, molecular characteristics and pathogenicity. One pathogenic fungus, named CCG4, was isolated from wild‐type Camellia oleifera of Hainan Province. Colonies were regular circular in shape with 50–60 mm diameter after 5 days of incubation at 28°C on potato dextrose agar (PDA) medium, and woolly with a small amount of jacinth pigment; the colony colour changed from white to black during later stages of infection. The mycelium produced was branched and septate. Conidia were cylindrical‐truncate, oblong‐obtuse to doliform, colourless with 1–2 hyaline oil globules and 4.5–5.3 μm × 7.7–17.5 μm. The sporodochia were cushion‐shaped. The pathogen was identified as Colletotrichum gloeosporioides on the basis of morphological characteristics and internal transcribed spacer sequence, which showed 100% query cover and 99% similarity to the sequence Colletotrichum gloeosporioides JN887341.1 , from a pathogenic fungus known to cause brown spot disease of Camellia oleifera.     

4株鹅源新城疫病毒融合蛋白基因的克隆及序列分析

测定了4株鹅源新城疫病毒(NDV)融合蛋白(F)基因5’端1700核苷酸片段的序列,并由此推导了F蛋白氨基酸序列,并对鹅源NDV的基因型分类地位进行探讨。结果表明,4株病毒F基因的同源性大于97%,与DNV标准强毒株F48E8 F基因的同源性为860%～868%,F基因转录起始序列及起始密码子位置与已知NDV完全相同;F蛋白具有和已知NDV相似的各种功能区,F蛋白前体F0裂解位点附近的氨基酸序列为112RRQKRF117,符合NDV强毒株的特征。对F基因第334～1682位核苷酸之间3种限制性内切酶HinfⅠ、BstoⅠ\,\%Rsa\%Ⅰ酶切图谱的分析表明,4株病毒的基因型与文献报道的I～Ⅷ型有明显差异。     

Characterization and Pathogenicity of Colletotrichum gloeosporioides and C. karstii Causing Preharvest Disease on Citrus sinensis in Italy

During the period from 2010 to 2013 preharvest symptoms were detected on different cultivars of sweet orange in six orchards in Catania, Siracusa and Enna provinces, Southern Italy. A total of 56 monosporic fungal isolates were obtained, and among these, 44 were identified as Colletotrichum gloeosporioides and 12 as C. karstii through morphological and molecular analysis. PCR with primers ITS1 and ITS4, primers TubGF1 and TubGR specific for β‐tubulin gene, primers GDF‐GDR, specific for Glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) gene, were used to confirm the identification of Colletotrichum isolates from citrus. The ITS1‐5.8S‐ITS2 region, a portion of approximately 500 bp of β‐tubulin gene and a fragment of 220 bp of GAPDH gene of the isolates were sequenced and analysed with the BLASTn program. Koch's postulates were fulfilled by pathogenicity tests carried out on fruit of ‘Tarocco Scirè’ and ‘Tarocco Nucellare’ with representative isolates of C. gloeosporioides and C. karstii. Field surveys and pathogenicity tests revealed significant differences in fruit susceptibility between ‘Tarocco Scirè’ and ‘Tarocco Nucellare’ and in virulence between the fungal species. To our knowledge, this is the first report on the emergence of Colletotrichum spp. causing anthracnose in preharvest conditions.     

Serotypes and Patterns of Antibiotic Resistance in Strains Causing Invasive Pneumococcal Disease in Children Less than 5 Years of Age

Objective

The serotypes and patterns of antibiotic resistance of Streptococcus pneumoniae (S. pneumoniae) strains that cause invasive pneumococcal disease (IPD) in infants were analyzed to provide guidance for clinical disease prevention and treatment.

Methods

The clinical features of confirmed IPD were evaluated in 61 patients, less than 5 years of age, who were admitted to our hospital between January 2009 and December 2011. The serotypes and antibiotic resistance of strains of S.pneumoniae were determined using the capsular swelling method and the E-test.

Results

A total of 61 invasive strains were isolated. The serotype distribution of those isolates were 19A (41.0%), 14 (19.7%), 19F (11.5%), 23F (9.8%), 8 (4.9%), 9V (4.9%), 1 (3.3%), and 4, 6B, and 20 (each 1.6%). The percentage of S. pneumoniae strains resistant to erythromycin, clindamycin, and cotrimoxazole were 100%, 86.9%, and 100%, respectively. The percentage of S. pneumoniae strains resistant to penicillin, amoxicillin/clavulanic acid, cefuroxime, ceftriaxone, cefotaxime, cefepime, and meropenem were 42.6%, 18.0%, 82.0%, 18.0%, 13.1%, 13.1%, and 36.1%, respectively. The percentage of multidrug-resistant strains was 95.6%. Strains of all serotypes isolated in this study were highly resistant to erythromycin, cotrimoxazole, and clindamycin. Strains with serotype 19A had the highest rates of resistance.

Conclusions

Serotype 19A strains were most frequently isolated from children with IPD treated in our hospital. The strains causing IPD are highly resistant to antibiotics.     

Genetic Analysis in the Colonia Strain of PHYSARUM POLYCEPHALUM: Heterothallic Strains That Mate with and Are Partially Isogenic to the Colonia Strain

Amoebae of the Colonia (CL) strain, which normally produce plasmodia in clones, are shown to cross with mt3 and mt4 amoebae under appropriate conditions. Strains carrying mt3 and mt4 in a CL genetic background were constructed and used in the genetic analysis of mutants isolated in CL.     

接种不同毒力的马立克氏病病毒后鸡病毒血症的动态比较

1日龄非免疫鸡分别接 马立克氏病病毒（MDV）Ⅰ强毒GA株、Ⅰ型MDV疫苗毒CVI988株和Ⅲ型火鸡疱疹病毒（HVT）疫苗株后第4日起,定期采血并和抗MDV囊膜糖蛋白B(gB)单克隆抗体介导的间接免疫荧光试验检测MDV在外周因液单核细胞（PBMCs）中的感染状况。结果发现,自接种Ⅰ型强毒GA株后第4日至鸡发病死亡前,都能检出GA株引起的病毒血症,并于2周左右达到高峰;自接种CVI988株后第4日至第20日止,能检出病毒血症,并于第8天左右达到高峰;自接种HVT后第4日至第16日止,能检出病毒血症,并于第6天左右达到高峰。与此同时,将GA株病毒血症的IFA检测结果与细胞培养上病毒空班计数试验结果比较,发现IFA试验比空斑计数试验更为敏感。本试验既可用于判断对鸡作MDV疫苗免疫的接种效果,又可用于检测MDV野毒感染状态。     

接种不同毒力的马立克氏病病毒后鸡病毒血症的动态比较

1日龄非免疫鸡分别接种马立克氏病病毒（MDV）I型强毒GA株、I型MDV疫苗毒CVI988株和III型火鸡疱疹病毒（HVT）疫苗株后第4日起,定期采血并用抗MDV囊膜糖蛋白B（gB）单克隆抗体介导的间接免疫荧光试验检测MDV在外周血液单核细胞（PBMC     

口蹄疫病毒基因组内部核糖体进入位点一级和二级结构分析

以口蹄疫病毒(foot-and-mouth disease virus,FMDV)强毒China/99株牛舌水泡皮为材料,用RT-PCR法提取RNA及扩增目的cDNA,然后与pGEM-T Easy载体连接并转化JM109菌株,再经重组质粒电泳、PCR和EcoRI酶切鉴定.用DNAstar软件比较了内部核糖体进入位点(IRES)的序列差异,并用RNAdraw软件绘制和分析了该区段的二级结构.8株FMDV IRES核苷酸序列比较表明该区段较为保守,并对非保守区域进行了分析.二级结构分析表明,FMDV IRES至少有3种二级结构图形:第一型有5个结构域,与Pilipenko等报道的一致;第二和三型分别有6和11个结构域,与Pilipenko等报道的结果不同.无论FMDV IRES二级结构如何不同,但单链区大部分核苷酸序列或基序相同,如AACUCC、GAAA、CUUU、AGG、AACC、GUAA等.茎环柄部核苷酸对维持二级结构的空间构像具有十分重要的作用,环中或单链区序列(基序)在维持其功能方面具有很重要的作用,如GAAA和CUUU基序分别是三级结构的组件和嘧啶区结合蛋白的结合位点.     

Trypanosoma cruzi IV Causing Outbreaks of Acute Chagas Disease and Infections by Different Haplotypes in the Western Brazilian Amazonia

Background

Chagas disease is an emergent tropical disease in the Brazilian Amazon Region, with an increasing number of cases in recent decades. In this region, the sylvatic cycle of Trypanosoma cruzi transmission, which constitutes a reservoir of parasites that might be associated with specific molecular, epidemiological and clinical traits, has been little explored. The objective of this work is to genetically characterize stocks of T. cruzi from human cases, triatomines and reservoir mammals in the State of Amazonas, in the Western Brazilian Amazon.

Methodology/Principal Findings

We analyzed 96 T. cruzi samples from four municipalities in distant locations of the State of Amazonas. Molecular characterization of isolated parasites from cultures in LIT medium or directly from vectors or whole human blood was performed by PCR of the non-transcribed spacer of the mini-exon and of the 24 S alfa ribosomal RNA gene, RFLP and sequencing of the mitochondrial cytochrome c oxidase subunit II (COII) gene, and by sequencing of the glucose-phosphate isomerase gene. The T. cruzi parasites from two outbreaks of acute disease were all typed as TcIV. One of the outbreaks was triggered by several haplotypes of the same DTU. TcIV also occurred in isolated cases and in Rhodnius robustus. Incongruence between mitochondrial and nuclear phylogenies is likely to be indicative of historical genetic exchange events resulting in mitochondrial introgression between TcIII and TcIV DTUs from Western Brazilian Amazon. TcI predominated among triatomines and was the unique DTU infecting marsupials.

Conclusion/Significance

DTU TcIV, rarely associated with human Chagas disease in other areas of the Amazon basin, is the major strain responsible for the human infections in the Western Brazilian Amazon, occurring in outbreaks as single or mixed infections by different haplotypes.     

Sensitivity of the Plaque Technique for the Study of Selected Vaccine Strains and a Virulent Strain of Newcastle Disease Virus

A plaque technique was found useful for the differentiation and titration of two vaccine strains and a local highly virulent field isolate of Newcastle disease virus.     

两个对浓核病毒(镇江株)具感性差异的家蚕品种的血液和围食膜蛋白的比较

家蚕品种间对浓核病毒(镇江株)具有不同的感染性,为了进一步探明家蚕对浓核病毒(镇江株)感性差异的分子机制,本文运用蛋白质电泳和质谱技术比较分析了两个对家蚕浓核病毒(镇江株)感性和抗性的近等基因系家蚕品种JS和NIL的血液和围食膜组织蛋白.结果表明:这两个家蚕品种的血液和围食膜组织蛋白组成差异很小.在血液组织蛋白中发现5个差异蛋白点,其中家蚕品种JS血液中有两个差异蛋白,可能分别为酪蛋白激酶和新型组织蛋白;在NIL血液组织中发现3个差异蛋白点,其中两个可能分别为线粒体延伸因子和类丝氨酸蛋白酶,另外1个的含量极显著高于JS,为血淋巴蛋白.在围食膜蛋白中共发现4个差异蛋白点,其中JS围食膜中有1个差异蛋白可能为新型组织蛋白;其余3个蛋白点在含量上相互间存在显著差异.本研究根据组织差异蛋白的功能初步推测家蚕对浓核病毒(镇江株)感性差异与血液蛋白差异无显著相关,与围食膜蛋白差异可能有关.