The effects of depth and salinity on juvenile Chinook salmon Oncorhynchus tshawytscha (Walbaum) habitat choice in an artificial estuary

The energetic cost for juvenile Chinook salmon Oncorhynchus tshawytscha to forage in habitats of different salinity and depth was quantified using a behavioural titration based on ideal free distribution theory. When given a choice between freshwater habitats of different depths (>0·83 or <0·83 m), a greater proportion of fish used the deeper habitat. When the deeper habitat was saltwater, the proportion of fish using it increased. When food was added to both the shallow freshwater and deep saline habitats, however, fish distribution returned to that observed when both habitats were fresh water. This indicates that the preference for deep saline habitats during the stratified phase was driven by some benefit associated with residency in deeper water, rather than salinity. The low perceived cost of low salinity might be in part due to the fish's ability to minimize this cost by only making brief forays into the alternate freshwater habitat. When the food ration delivered to the more costly, shallow habitat was 50% greater than that delivered to the less costly, deep habitat, fish distributed themselves equally between the two habitats, presumably because of equal net benefits. This study demonstrates that juvenile Chinook salmon prefer deep saline habitat to shallow freshwater habitats but will make brief forays into the freshwater habitat if food availability is sufficiently high.     

Invasion of alien macroalgae in different Mediterranean habitats

The study evaluated different macroalgal invasions in the main Mediterranean coastal habitats on hard bottom. Biodiversity, species composition and structure of macroalgal assemblages were compared among non-invaded areas and areas invaded by the Chlorophyta Caulerpa racemosa var. cylindracea and by the turf-forming Rhodophyta Womersleyella setacea in three different habitats: shallow rocky bottom, deep rocky bottom and dead matte of the seagrass Posidonia oceanica. Results showed that alien macroalgae constituted a relevant component of benthic assemblages in invaded areas of the Mediterranean Sea. Assemblages invaded by Womersleyella setacea and Caulerpa racemosa showed lower values of diversity and large differences in the structure and species composition related to non-nvaded assemblages. The species that mostly suffered from invasion were erect species reproducing sexually; moreover, the dominance of W. setacea led to low abundance of native filamentous algae, while C. racemosa colonization seemed particularly threatening for encrusting algae. All the studied habitats appeared highly invasible by alien macroalgae, even if W. setacea appeared more invasive in deeper habitats, while colonization of C. racemosa seemed more serious in shallower habitats; the dead matte of P. oceanica represented a suitable substrate for the spread of both species. Differences among assemblages in different habitats were reduced in invaded areas.     

The inshore marine fishes of the Vestfold Hills region,Antarctica

Thirteen species of fish have so far been caught in the inshore waters around the Vestfold Hills, including the Rauer Islands, in depths down to approximately 100 m. Species caught depend markedly on the type of fishing gear used, but three species are clearly dominant numerically. Pagothenia bernacchii is most abundant in the shallower (< 20 m deep) weedy and rocky habitats, while Chionodraco hamatus is dominant in the deeper (> 20 m deep) nearshore troughs and further offshore. Pagothenia borchgrevinki occupies the specialized habitat associated with sea ice and close-inshore areas, including fjords and Burton Lake.The species list from the Vestfold Hills area is similar to lists from comparable locations in East Antarctica except for the major difference that C. hamatus has not yet been recorded from such shallow waters at the other locations, while P. bernacchii and P. hansoni are much more abundant in water deeper than 20 m at those sites than at Davis.     

Fish size and habitat depth relationships in headwater streams

Summary Surveys of 262 pools in 3 small streams in eastern Tennessee demonstrated a strong positive relationship between pool depth and the size of the largest fish within a pool (P<0.001). Similarly, the largest colonizers of newly-created deep pools were larger than the colonizers of shallow pools. We explored the role of predation risk in contributing to the bigger fish — deeper habitat pattern, which has been noted by others, by conducting five manipulative field experiments in two streams. Three experiments used stoneroller minnows (Campostoma anomalum); one used creek chubs (Semotilus atromaculatus); and one used striped shiners (Notropis chrysocephalus). The stoneroller experiments showed that survival of fish approximately 100 mm in total length (TL) was much lower in shallow pools (10 cm deep) than in deep (40 cm maximum) pools (19% versus 80% survival over 12 d in one experiment) and added cover markedly increased stoneroller survival in shallow pools (from 49% to 96% in an 11-d experiment). The creek chub experiment showed that, as for stonerollers, pool depth markedly influenced survival: the chubs survived an average of 4.9 d in shallow pools and >10.8 d in deep pools. In the striped shiner experiment in shallow artificial streamside troughs, no individuals 75–100 mm TL survived as long as 13 d, where-as smaller (20–25 mm) fish had 100% survival over 13 d. The results of the experiments show that predation risk from wading/diving animals (e.g., herons and raccoons) is much higher for larger fishes in shallow water than for these fishes in deeper water or for smaller fish in shallow water. We discuss the role of predation risk from two sources (piscivorous fish, which are more effective in deeper habitats, and diving/wading predators, which are more effective in shallow habitats) in contributing to the bigger fish — deeper habitat pattern in streams.     

Demographic history,geographical distribution and reproductive isolation of distinct lineages of blue rockfish (Sebastes mystinus), a marine fish with a high dispersal potential

Understanding the barriers to genetic exchange in taxonomic groups that have a high dispersal potential will provide critical information on speciation in general. Blue rockfish (Sebastes mystinus) are good taxa to examine speciation because they are nonmigratory inhabitants of shallow rocky reef habitats along the eastern North Pacific with a pelagic larval stage lasting 3–5 months. The goal of this study was to analyse the evolutionary history and distribution patterns of different lineages within S. mystinus described previously and use this information to understand the speciation process in this group of high dispersal fish. The molecular data derived from specimens sampled over approximately 1650 km of the S. mystinus range revealed a northerly and southerly distribution for the two lineages. Almost equal frequencies of both lineages occurred at centrally located sample locations, with evidence of reproductive isolation between the lineages. A demographic analysis showed that the two lineages diverged and experienced sudden expansion prior to the last glacial maximum, which affected the observed pattern of genetic structure. The spatial distribution, demographic history and degree of genetic distinctiveness found from the genetic analysis, despite the high potential for dispersal in S. mystinus, suggest both lineages diverged in allopatry.     

A synthesis of genetic connectivity in deep‐sea fauna and implications for marine reserve design

With anthropogenic impacts rapidly advancing into deeper waters, there is growing interest in establishing deep‐sea marine protected areas (MPAs) or reserves. Reserve design depends on estimates of connectivity and scales of dispersal for the taxa of interest. Deep‐sea taxa are hypothesized to disperse greater distances than shallow‐water taxa, which implies that reserves would need to be larger in size and networks could be more widely spaced; however, this paradigm has not been tested. We compiled population genetic studies of deep‐sea fauna and estimated dispersal distances for 51 studies using a method based on isolation‐by‐distance slopes. Estimates of dispersal distance ranged from 0.24 km to 2028 km with a geometric mean of 33.2 km and differed in relation to taxonomic and life‐history factors as well as several study parameters. Dispersal distances were generally greater for fishes than invertebrates with the Mollusca being the least dispersive sampled phylum. Species that are pelagic as adults were more dispersive than those with sessile or sedentary lifestyles. Benthic species from soft‐substrate habitats were generally less dispersive than species from hard substrate, demersal or pelagic habitats. As expected, species with pelagic and/or feeding (planktotrophic) larvae were more dispersive than other larval types. Many of these comparisons were confounded by taxonomic or other life‐history differences (e.g. fishes being more dispersive than invertebrates) making any simple interpretation difficult. Our results provide the first rough estimate of the range of dispersal distances in the deep sea and allow comparisons to shallow‐water assemblages. Overall, dispersal distances were greater for deeper taxa, although the differences were not large (0.3–0.6 orders of magnitude between means), and imbalanced sampling of shallow and deep taxa complicates any simple interpretation. Our analyses suggest the scales of dispersal and connectivity for reserve design in the deep sea might be comparable to or slightly larger than those in shallow water. Deep‐sea reserve design will need to consider the enormous variety of taxa, life histories, hydrodynamics, spatial configuration of habitats and patterns of species distributions. The many caveats of our analyses provide a strong impetus for substantial future efforts to assess connectivity of deep‐sea species from a variety of habitats, taxonomic groups and depth zones.     

Testes Investment along a Vertical Depth Gradient in an Herbivorous Fish

Males are expected to adjust testes investment according to the varying level of sperm competition that they experience. Spatial and temporal variation in population density likely influences sperm competition. In herbivorous aquatic organisms, densities often decrease along a vertical depth gradient, because their food is photosynthetic and thus becomes less abundant in deeper regions where less light penetrates. This decrease should be dramatic on a steep slope, which allows testing of the association between density and testes investment at the within‐population level. We tested the effect in the socially monogamous herbivorous cichlid fish Variabilichromis moorii living on a steep slope in Lake Tanganyika. We examined competitor density and food abundance as ecological factors, territory defense behaviors and phenotypic traits (testes investment and somatic investment), and compared them between shallow (4–6 m depth) and deep habitats (10–13 m depth) separated by several dozen meters. We found that food availability drastically decreased with increasing depth and that V . moorii was much more abundant in shallower habitats. Males in shallower habitats were in better physical condition (based on fat and liver mass) despite experiencing greater costs in terms of territory defense. Testes investment differed in areas with different competitor density and food abundance along a vertical depth gradient, but competitor density was the most explanatory factor of the difference. This suggests that this herbivorous fish would change testes investment in response to population density.     

Some like it deep: Intraspecific niche segregation in ruffe (Gymnocephalus cernua)

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Shallow water predation risk for a juvenile flatfish (winter flounder; Pseudopleuronectes americanus, Walbaum) in a northwest Atlantic estuary

Many small fish, including several juvenile Atlantic flatfish, are most abundant in shallow areas presumable because these habitats enhance survivorship and/or growth. In this study, we investigated size-dependent depth distributions and the role of shallow habitats as predator refuges for age-0 winter flounder (Pseudopleuronectes americanus) in a northwest Atlantic estuarine nursery. Analysis of trawl surveys performed during the larval settlement period throughout the Navesink River and Sandy Hook Bay, New Jersey, showed that as fish increased in size, depth of occurrence gradually decreased, so that individuals >35 mm standard length (SL) were concentrated in habitats ∼1 m deep. Tethering in structurally simple and adjacent shallow and deep habitats showed that predation risk for flounder (30-50 mm SL) was low in shallow water (<1 m) and increased rapidly with depth. Summer flounder (Paralychthys dentatus), which were more abundant in trammel nets in deep habitats and included winter flounder in their diets, appeared to be important consumers of tethered fish. Our results indicate that following larval settlement, winter flounder emigrate from or suffer high mortality in deeper water to become concentrated in shallow habitats that can serve as predator refuges even when they lack complex physical structures. These results highlight the potential for functional habitat loss when natural and/or anthropogenic factors make shallow habitats unavailable to young fish.     

Timing and sites of parturition of the viviparous scorpionfish, Sebastiscus marmoratus

Timing and sites of parturition of the viviparous scorpionfish Sebastiscus marmoratus were investigated both in aquaria and natural habitats of a rocky coast in southern Japan. Females released 4 mm TL larvae during the early night in winter. Night spawning may be advantageous in avoiding predators of both larvae and spawners, because most such predators are inactive during the night. Females inhabiting shallow areas (< 6 m depth) moved to deeper sites for parturition, but ones inhabiting deeper areas (6–8 m depth) gave birth within their usual habitats. This migration may be advantageous in effective larval dispersal.     

Fish feeding guilds in shallow rocky and soft bottom areas on the Swedish west coast

Multivariate analyses of the diet relationships within fish assemblages resulted in the recognition of five major feeding guilds in shallow (0-9 m) rocky- and soft-bottom habitats on the Swedish west coast. The two habitats had similar guilds that could be broadly described as piscivores, decapod feeders, copepod feeders and amphipod and mollusc feeders. The last guild on the rocky bottom was more strictly one of amphipod feeders, whereas the last guild on soft bottoms consisted of infauna feeders (mainly polychaetes and bivalves). A comparison of the diet of the entire fish assemblages showed that amphipods and gastropods were more prevalent as prey taxa on rocky bottoms, whereas bivalves and teleosts were more common on soft bottoms. A large proportion (12 out of 27 species) of the fish species investigated was found in both habitats. These fish species generally seemed to rely on the same major prey groups in the two habitats, but also included prey taxa characteristic for the habitat in which they resided. Sea trout Salmo trutta , mackerel Scombrus scombrus , saithe Pollachius virens , whiting Merlangius merlangus and cod Gadus morhua were found to be the major piscivores in both the investigated habitats. Herring Clupea harengus and members of the family gobiidae were the most prevalent prey species for piscivores within the rocky- as well as the soft-bottom fish assemblage. A comparison of feeding modes suggested that the fish assemblage on rocky bottoms predominantly (60% of the food items) relied on food found in vegetation. On soft bottoms, the average distribution of food categories among fish species was 44% benthic, 35% pelagic and 21% vegetation-associated food items.     

Nearshore fish habitat utilization and species associations in Lake Opinicon (Ontario,Canada)

Synopsis The bulk of Lake Opinicon fish biomass is concentrated in the physically diverse inshore areas. Quantitative analysis of the community compositions of the various inshore habitat types (weedy inlets, sandy shallows, rock shelf, gravel, etc.) showed that each supported a characteristic assemblage of fishes with a relatively constant species and year class composition. This was maintained throughout the season despite a drop in fish biomass in late summer when there was a progressive movement into the offshore waters.Weedbed areas supported the highest biomass, and greatest species and year class diversity. Thereafter, in declining order of richness, were rocky and sandy areas. A few fish species were restricted to single habitat types, e.g.Notropis heterodon to inshore weedbeds.Lepomis macrochirus, the commonest species in the lake was, by contrast, versatile and occurred in all inshore habitats. Commonly the numbers of a species in a habitat differed between day and night. Significant diel movements between habitats characterized two nocturnal feedersPomoxis nigromaculatus andIctalurus nebulosus.     

Effects of a predatory fish (Galaxias olidus) on the structure of intermittent stream pool communities in southeast Australia

Abstract The impact of predation over a 3 week period by the small (mean length 53 mm) salmoniform fish, Galaxias olidus, on the invertebrate communities in the still summer pools of an intermittent stream in southeastern Australia was tested using enclosures that incorporated both deep and shallow habitat areas. Twenty G. olidus, a key generalist predator in the system studied, were enclosed for 3 weeks in 1.5 × 1.7 m enclosures. Galaxias olidus was found to reduce significantly the distribution and abundance of air-breathing nektonic species. In contrast, the abundance of non-air-breathing nektonic species increased in the presence of fish in the deep areas of the enclosures. There was no significant impact offish predation on species richness, total abundance, epibenthic or interstitial species. The most likely reason for the general lack of response to the presence of fish by epibenthic and interstitial species is the availability of abundant spatial refugia from predation within the complex substrate of the stream. In contrast, air-breathing nektonic species are vulnerable to predation by fish due to the lack of refuges in the open water. Increases in the abundance of non-air-breathing nektonic species in the presence of fish may be related to reductions in the abundance of predatory dytiscid beetles. Significant differences between deep and shallow habitats were observed in total abundance and species richness, and in the abundances of air-breathing nektonic and epibenthic species, suggesting that physicochemical factors play a key role in determining invertebrate distribution within stream pools.     

Post‐hatch dispersal of lake sturgeon (Acipenser fulvescens,Rafinesque, 1817) yolk‐sac larvae in relation to substrate in an artificial stream

Knowledge of the effects of environment and genotype on behavior during early ontogenetic stages of many fish species including lake sturgeon (Acipenser fulvescens) is generally lacking. Understanding these effects is particularly important at a time when human activities are fundamentally altering habitats and seasonal and diel physical and biotic stream features. Artificial stream channels were used in a controlled experiment to quantify lake sturgeon yolk‐sac larvae dispersal distance and stream substrate preference from different females (N = 2) whose eggs were incubated at different temperatures (10 and 18°C) that simulated stream conditions during early and late spawning and incubation periods in the Black River, Michigan. Data revealed that yolk‐sac larvae exhibited considerable variability in dispersal distance as a function of family (genotype), temperature experienced during previous (embryonic) ontogenetic stages, and environmental ‘grain’. Yolk‐sac larvae dispersal distance varied as a function of the juxtaposition of substrate to location of egg hatch. Lake sturgeon yolk‐sac larvae dispersed from mesh screens attached to bricks and settled exclusively in gravel substrate. Dispersal distance also varied as a function of family and egg incubation temperatures, reflecting differences in offspring body size and levels of endogenous yolk reserves (yolk sac area) at hatch. Expression of plasticity in dispersal behavior may be particularly important to individual survival and population levels of recruitment contingent upon the location, size, and degree of fragmentation of suitable (gravel) habitats between adult spawning and yolk‐sac larvae rearing areas.     

Reef fish community structure in the Tropical Eastern Pacific (Panamá): living on a relatively stable rocky reef environment

We compared the community structure of reef fish over different physical complexities in 12 study zones of Bahía Honda, Gulf of Chiriquí (BH-GCH), Tropical Eastern Pacific (TEP), Panama, aiming at an analysis of the importance of the physical structure provided by corals, rocks and benthic sessile organisms. This was the first region that emerged in the Isthmus of Panama; it exhibits the oldest benthic fauna and has constant conditions in terms of temperature and salinity. Two hundred and eighty-eight visual fish censuses were conducted on 48 benthic transects from February to July 2003. One hundred and twenty-six fish species of 44 families were found. Plankton feeding pomacentrids and labrids along with haemulids that feed on mobile invertebrates were the most abundant, particularly in shallow areas. Fourteen species showed size-segregations between zones, suggesting ontogenetic migrations (smaller fishes in shallow high-complexity zones, larger-sized fishes in deeper habitats). Highly mobile and site-attached genera were abundant in most shallow, wave-exposed zones particularly on exposed rocky substrates. Planktivores were the most abundant, followed by carnivores, feeders on mobile invertebrate and piscivores. Herbivores and feeders on sessile invertebrate were lower in abundance. Species richness exceeds that of any other studied region close to the mainland in the TEP and correlates with substrate diversity, increasing size-heterogeneity of holes and structural complexity. Species diversity increases with habitat complexity and benthic diversity. It seems that water current strength, tides and waves which select for swimming, play an important role in the community organization. The study region has been proposed as a refuge-centre in the TEP, where reef fishes that evolved on coral reefs have shifted their distribution onto rocky reef habitats.     

Habitat-specific effects of particle size, current velocity, water depth, and predation risk on size-dependent crayfish distribution

This study assessed effects of abiotic (current velocity, water depth, particle size) and biotic (predation risk for crayfish, size distribution and densities of predatory fish) variables on habitat- and size-specific distribution patterns of lotic crayfish (Orconectes obscurus) using field surveys and tethering experiments. Additionally, particle size manipulations were used with predation assays to assess habitat-specific interactions since the average particle size increased from deep pools to shallow pools to riffles. Large crayfish had the highest densities in deep pools and were associated with increased water depth, whereas small and medium crayfish had the highest densities in shallow pools and were strongly associated with increased particle size and decreased water depth. Regardless of size, crayfish in deep pools had significantly lower survival than in shallow pools and riffles. However, only small crayfish showed consistent differences in predation risk by habitat type and were significantly more vulnerable to predation than larger crayfish. Additionally, large rocky refugia resulted in significantly higher survival of small crayfish in the combined particle manipulation/tethering experiment. Overall, predation appears to be a key mechanism structuring habitat-specific distribution patterns for only small O. obscurus. Large substrates may be particularly important in habitats where both small crayfish density and predation risk are high.     

Patterns in shallow subtidal marine assemblages along the coast of New South Wales

Shallow subtidal areas of rocky reefs in central and southern New South Wales may best be described as a mosaic of habitats, the distributions of which are seemingly related to depth, wave exposure and a number of biological processes, particularly herbivory. The Fringe habitat is generally found only in the most shallow waters. Forests of the laminarian alga Ecklonia radiata are often found at intermediate depths. In deeper, or more sheltered water, sponges, ascidians and red algae are more abundant and the abundances of sea urchins and other invertebrate grazers decline. Overlying this broad-brush pattern are patches of crustose coralline algae (the Barrens habitat), the distributions of which are not clearly related to depth. Invertebrate herbivores, and sea urchins in particular, are abundant in the Barrens habitat. The Barrens habitat was most represented at the more southern locations. At the two most northern locations, reefs were shorter in length and dominated by ascidians (Pyura species).     

Fish habitat suitability and community structure in the equatorial Lake Naivasha,Kenya

Habitat suitability indices indicate how fish species respond to different habitat types. We assessed effects of habitat characteristics on fish distribution in an equatorial lake, Lake Naivasha, Kenya, where habitats vary according to substrate, depth and turbidity. Using monthly data between 2008 and 2010 using multi-mesh gill nets, catch per unit effort was used as a relative abundance measure to identify how habitat variables drive fish distribution. The focus was on commercial fishes: two introduced species (Cyprinus carpio and Micropterus salmoides) and two naturalised species (Oreochromis leucostictus and Tilapia zillii). Analyses revealed distinct preferences for different habitat variables by all commercial species except for C. carpio. For example, O. leucostictus preferred shallow waters with silt–clay substrates whilst M. salmoides preferred deeper waters with sandy/rocky substrates. Conversely, C. carpio showed no specialised habitat requirements. Niche overlaps were significantly lower between O. leucostictus and its respective sympatric species than between other species, a likely result of its territorial behaviour. The continued environmental degradation of Lake Naivasha may imperil the preferred habitats of the niche restricted M. salmoides, O. leucostictus and T. zillii. By contrast, the ubiquity of C. carpio may facilitate their invasion, and consequently sustain their dominance in the lake’s commercial fishery.     

A bedform morphology hypothesis for spawning areas of Chinese sturgeon

Results from previous research suggested that geomorphic characteristics may be important controlling factors among other microhabitat variables for spawning fish. We investigated the bedform morphology of seven spawning areas (five historic and two present spawning areas) of Chinese sturgeon (Acipenser sinensis) by analysis of relief maps of the riverbed and by field surveys. We conclude that the topographic characteristics of the spawning areas include rocky or gravelly substrate river bend, large variations in water depth and river width and a slope with moderate length and slope. The turning structure and the adverse slope may be the most important topographic characteristics for the spawning areas. Combined with the reproductive occurrence of the fish in these spawning areas, we tentatively propose a bedform morphology hypothesis for the spawning areas. We consider that a spawning area of A. sinensis should consist of three functional areas: Mating area (M), Dispersal area (D) and Incubation area (I). M, D and I are distributed along the water current and their bedform characteristics are clearly different. M is the place for mature fish to mate and spawn. It is usually below a riffle with rolling terrain. D is the place for fertilizing and dispersing fertilized eggs. It is usually in a river bend with sharp variations in terrain, such as deep pools or steep slopes. I is the place for dispersal of fertilized eggs. It is usually in long point bars or broad shallow areas with rocky substrate. This hypothesis could serve as a guideline for improving the present spawning areas or constructing new spawning areas, so as to rehabilitate the wild stock of the sturgeon.     

The forgotten feeding ground: patterns in seasonal and depth-specific food intake of adult cod Gadus morhua in the western Baltic Sea

This study presents the diet composition of western Baltic cod Gadus morhua based on 3150 stomachs sampled year-round between 2016 and 2017 using angling, gillnetting and bottom trawling, which enhanced the spatio-temporal coverage of cod habitats. Cod diet composition in shallow areas (<20 m depth) was dominated by benthic invertebrate species, mainly the common shore crab Carcinus maneas. Compared to historic diet data from the 1960s and 1980s (limited to depth >20 m), the contribution of herring Clupea harengus decreased and round goby Neogobius melanostomus occurred as a new prey species. Statistical modelling revealed significant relationships between diet composition, catch depth, fish length and season. Generalized additive modelling identified a negative relationship between catch depth and stomach content weight, suggesting reduced food intake in winter when cod use deeper areas for spawning and during peak summer when cod tend to avoid high water temperatures. The results of this study highlight the importance of shallow coastal areas as major feeding habitats of adult cod in the western Baltic Sea, which were previously unknown because samples were restricted to deeper trawlable areas. The results strongly suggest that historic stomach analyses overestimated the role of forage fish and underestimated the role of invertebrate prey. Eventually, this study shows the importance of a comprehensive habitat coverage for unbiased stomach sampling programmes to provide a more reliable estimation of top predator diet, a key information for food web analyses and multispecies models.