Ethylene and methane in the upper water column of the subtropical Atlantic

The vertical distributions of ethylene and methane in the upper water column of the subtropical Atlantic were measured along a transect from Madeira to the Caribbean and compared with temperature, salinity, oxygen, nutrients, chlorophyll-a, and dissolved organic carbon (DOC).Methane concentrations between 41.6 and 60.7 nL L-1 were found in the upper 20 m of the water column giving a calculated average flux of methane into the atmosphere of 0.82 g m-2 h-1. Methane profiles reveal several distinct maxima in the upper 500 m of the water column and short-time variations which are presumably partly related to the vertical migration of zooplankton.Ethylene concentrations in near surface waters varied in the range of 1.8 to 8.2 nL L-1. Calculated flux rates for ethylene into the atmosphere were in the range of 0.41 to 1.35 g m-2 h-1 with a mean of 0.83 g m-2 h-1. Maximum concentrations of up to 39.2 nL L-1 were detected directly below the pycnocline in the western Atlantic. The vertical distributions of ethylene generally showed one maximum at the pycnocline (about 100 m depth) where elevated concentrations of chlorophyll-a, dissolved oxygen, and nutrients were also found; no ethylene was detected below 270 m depth. This suggests that ethylene release is mainly related to one, probably phytoplankton associated, source, while for methane, enhanced net production occurs at various depth horizons. For surface waters, a simple correlation between ethylene and chlorophyll-a or DOC concentrations could not be observed. No considerable diurnal variation was observed for the distribution and concentration of ethylene in the upper water column.     

A segmented pipe sampler for integrated profiling of the upper water column

The segmented integrating pipe sampler (SIPS) samples a continuousvertical profile of physical and biological properties of theupper water column. Composite or detailed samples can be collectedfor analysis of phytoplankton abundance and distribution. Thissampling system requires no power source and can be operatedfrom a small boat or platform in a variety of aquatic habitats.The correlation coefficient calculated for the phytoplanktonabundance sampled by the SIPS and pump was 0.900, while thecoefficient for the SIPS and Niskin bottle comparison was 0.797.     

夏季台湾海峡南部海域上层水体的生物固氮作用

2011年6-7月,利用¹⁵N₂示踪法实测了台湾海峡南部海域的生物固氮速率,结合温度、盐度、天然颗粒物氮同位素组成的分布,分析并讨论了影响研究海域生物固氮速率的环境因素。结果表明,夏季台湾海峡南部海域的生物固氮速率介于 168-1080 nmol m^-3 d^-1之间,平均为537 nmol m^-3 d^-1,较高的生物固氮速率大多出现在次表层水体中。研究站位的积分固氮速率变化范围为11-40 μmol m^-2 d^-1,平均为23 μmol m^-2 d^-1。积分固氮速率的空间变化与不同水团的影响有关,在受黑潮水影响的海域,生物固氮速率较高,而在上升流和受河流冲淡水影响的海域,生物固氮速率较低,说明较低的水温及较高的无机氮营养盐可能会抑制研究海域的生物固氮作用。研究海域天然颗粒物δ¹⁵N与生物固氮速率之间呈现良好的负相关关系,表明天然颗粒物氮同位素组成可定性指征研究海域生物固氮作用的强弱。     

Multilayer biological structure and mixing in the upper water column of Lake Biwa during summer 2008

We carried out a 24-h station experiment at Lake Biwa (Japan) to measure mixing events and concurrent biological signals using a free-fall microstructure profiler (TurboMAP-L), conventional hydrographic measurement device (F-probe), and the Tracker acoustic profiling system (TAPS). A clearly defined three-layer physical system was observed. Two layers were actively mixed: the surface-mixed layer and the subsurface-mixed layer. Both winds and night-time convection create the surface-mixed layer, and vertical shear due to a counterclockwise gyre maintains turbulence in the subsurface mixing layer. A strongly stratified layer between these two mixing layers is almost turbulence free, so no material flux is expected. A local oxygen maximum layer, a local oxygen minimum layer, and layers of increased chlorophyll and zooplankton abundance are all located in this strongly stratified layer. The data show the intricate influence of physical processes on the structure of biological systems and their combined influence on biogeochemical and trophic transfers in aquatic systems.     

Water discharge-regulated bacteria/heterotrophic nanoflagellate (HNF) interactions in the water column of the river Rhine

Heterotrophic nanoflagellates (HNF) make up a large fraction of the zooplankton biomass of rivers. Their abundance can be strongly affected by water discharge, but the consequences of this highly dynamic factor for their main prey, the bacteria, is still unknown. The focus of this study was on bacterial/HNF interactions in the Lower River Rhine (Germany) with respect to the discharge-dependent dynamics. The bacterial and HNF abundances and biomasses were determined over the course of 17 months. The potential consumption of bacteria by HNF was calculated based on the biomass data and on data on the HNF production. The mean bacterial abundance in the Rhine at Cologne ranged from 0.3 x 10(6) to 3.5 x 10(6) cells mL(-1), with lowest abundances in winter and highest in late spring. No significant changes in abundance during the downstream passage were found. Neither could a significant correlation be found between bacterial and HNF abundance. The ratio of bacterial to HNF abundance showed high variations which lay between 166 and 19,055 and was negatively dependent on water discharge. Monthly routine calculations on the potential bacterial consumption by HNF revealed a clearance of between 2 and 82% of the bacterial standing stock d(-1). The values increased greatly with water discharge and could exceed 100% d(-1) at times of high water flow. The presented data suggests a change in the top-down control of the planktonic bacteria due to the water discharge: The importance of benthic predation at low water flow (high contact probability to benthic predators) gives way to an increased importance in predation by planktonic HNF at high water flow.     

Group sizes and compositions of monkeys in the upper Amazon basin

Eleven species of New World monkeys inhabit the basin of the upper Amazon. Twice, for a total 16 months, the author studied the group sizes and compositions of these species in the basin of the Rivers Caquetá and Putumayo, particularly in the two study areas established in the basin of the River Peneya, a tributary of the River Caquetá. Data obtained by the author were compared with those on the same and close relative species living in other places. And the author could conclude that each species, showing a considerable range of variation in group size and composition, has a common specificity for the social structure of the unit group.     

Breeding behaviour and distribution of the tucunaréCichla aff. monoculus in a clear water river of the Bolivian Amazon

The breeding behaviour and distribution of tucunaré Cichla aff. monoculus were studied for 2 months during the breeding season in the Paraguá River, Bolivia. Tucunaré were more abundant in the old remnant channels and isolated lakes than in the main river channel. The breeding period was delayed for c . 1 month in the river compared to the old remnant channels and lakes. The batch fecundity ranged between 3712 and 10 355 for females weighing 460 and 1380 g, respectively. Gonad analysis of egg-guarding or juvenile-guarding females showed that a female was able to spawn more than once during the breeding season. Nests were significantly larger and deeper in the isolated lakes than in the old remnant channels and in the main river. The maximum depth of the nests also differed significantly, being deeper in the isolated lakes than in the river channel and in the old remnant channels.     

Foods and feeding behavior of monkeys in the upper Amazon basin

Eleven species of the New World monkeys inhabit the basin of the River Caquetá in the upper Amazon. Twice for a total of 16 months the author studied the foods and feeding behaviors of 10 species of monkeys in the basin of the River Caquetá, particularly in the two study areas established in the basin of the River Peneya, a tributary of the River Caquetá. Sixty-seven adult monkeys of 10 species were collected, mainly in the basin of the River Peneya, for morphological study, so that the author had a chance to analyze their stomach contents. Some characteristics of the food habits of 10 species of the New World monkeys inhabiting the same area were made clear by means of direct observations in the wild and the analysis of the stomach contents.     

Dissolved carbon in an urban area of a river in the Brazilian Amazon

The main objective of this study was to evaluate dissolved organic and inorganic carbon dynamics along upstream and downstream reaches of the Acre River draining the city of Rio Branco, in the state of Acre, Brazil. Dissolved organic carbon (DOC) concentrations in the Acre River were significantly higher during the wet season, ranging from 385 ± 160 to 430 ± 131 ??M among the stations, with no difference in upstream and downstream concentrations. Dissolved inorganic carbon (DIC) showed an inverse pattern, with higher concentrations in the dry season, ranging from 816 ± 215 to 998 ± 754 ??M among the stations, as well as no difference in upstream and downstream DIC concentrations. Bicarbonate was the dominant DIC fraction and was mainly observed during the dry season. Due to lower pH values during the wet season, CO₂ partial pressure (pCO₂) in the Acre River was higher in the wet season, with values ranging from 4,567 ± 1,813 to 4,893 ± 837 ppm among the stations. Our results indicate that, although the Acre River drains a large city with significant sewage disposal into the river, seasonal hydrological processes are the main driver of dissolved carbon dynamics, even in the downstream study reach directly influenced by urbanization.     

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean

Nitrogen (N) is an essential nutrient in the sea and its distribution is controlled by microorganisms. Within the N cycle, nitrite (NO₂⁻) has a central role because its intermediate redox state allows both oxidation and reduction, and so it may be used by several coupled and/or competing microbial processes. In the upper water column and oxygen minimum zone (OMZ) of the eastern tropical North Pacific Ocean (ETNP), we investigated aerobic NO₂⁻ oxidation, and its relationship to ammonia (NH₃) oxidation, using rate measurements, quantification of NO₂⁻-oxidizing bacteria via quantitative PCR (QPCR), and pyrosequencing. ¹⁵NO₂⁻ oxidation rates typically exhibited two subsurface maxima at six stations sampled: one located below the euphotic zone and beneath NH₃ oxidation rate maxima, and another within the OMZ. ¹⁵NO₂⁻ oxidation rates were highest where dissolved oxygen concentrations were <5 μM, where NO₂⁻ accumulated, and when nitrate (NO₃⁻) reductase genes were expressed; they are likely sustained by NO₃⁻ reduction at these depths. QPCR and pyrosequencing data were strongly correlated (r²=0.79), and indicated that Nitrospina bacteria numbered up to 9.25% of bacterial communities. Different Nitrospina groups were distributed across different depth ranges, suggesting significant ecological diversity within Nitrospina as a whole. Across the data set, ¹⁵NO₂⁻ oxidation rates were decoupled from ¹⁵NH₄⁺ oxidation rates, but correlated with Nitrospina (r²=0.246, P<0.05) and NO₂⁻ concentrations (r²=0.276, P<0.05). Our findings suggest that Nitrospina have a quantitatively important role in NO₂⁻ oxidation and N cycling in the ETNP, and provide new insight into their ecology and interactions with other N-cycling processes in this biogeochemically important region of the ocean.     

Unmasking continental natal homing in goliath catfish from the upper Amazon

1. Amazonian goliath catfishes are widespread in the Amazon Basin. Recently, otolith ⁸⁷Sr:⁸⁶Sr analyses using laser ablation–multi-collector–inductively coupled plasma mass spectrometry (LA-MC-ICPMS) revealed a >8,000 km trans-Amazonian natal homing in Brachyplatystoma rousseauxii among fish caught and hatched in the largest Amazon River tributary, the upper Madeira basin. Although also suspected for fish in the upper Amazon, homing could not be demonstrated owing to less distinct environmental ⁸⁷Sr:⁸⁶Sr gradients along the Amazon mainstem. Using scanning X-ray fluorescence microscopy (SXFM), a separate study provided evidence that Se:Ca and Sr:Ca are useful markers for identifying migration into Andean headwaters and the estuarine environment.
2. We analysed otoliths of known ⁸⁷Sr:⁸⁶Sr profiles using SXFM mapping to test if Sr:Ca and Se:Ca patterns could demonstrate natal homing for three fish caught in the upper Amazon, using as reference two individuals that were natal homers and two forced residents (hatched after the construction of hydroelectric dams on the Madeira River) from the upper Madeira River.
3. As hypothesised, although the Sr isotope profiles of the upper Amazon individuals were uninformative, two of them presented similar alternating mirror patterns of Sr:Ca and Se:Ca to those of the upper Madeira natal homers, indicating migrations out of the Andean region and into the estuary area. Both were therefore natal homers from the upper Amazon.
4. The third individual from the upper Amazon presented similar Sr:Ca and Se:Ca patterns to those of the upper Madeira residents, suggesting it was a natural resident from the upper Amazon.
5. By combining the results of ⁸⁷Sr:⁸⁶Sr analyses (LA-MC-ICPMS) and Sr:Ca and Se:Ca mappings (SXFM) that are completely independent of one another, we demonstrated that B. rousseauxii also performs natal homing in the upper Amazon. Our results indicate that the life cycle of B. rousseauxii is more complex than previous literature hypothesised, with the existence of partial migration, even in absence of physical barriers. Quantifying the relative importance of these different life-history strategies will have important implications for fisheries management. Our results also lay the groundwork for conservation efforts in the context of hydropower development in the Amazon Basin and set testable hypotheses of the potential impacts of the Madeira River dams.

     

Historical processes explain fish diversity in the upper Amazon River basin

Hydrobiologia - Despite decades of investigation, there are few ecological studies on the Amazonian fish fauna that have looked both at the main factors shaping the fish assemblages at a regional...     

Reference values for serum chemistry of wild Amazon river dolphins (Inia geoffrensis) from the central Amazon

Blood values of wild cetacean population are a valuable tool to drive proper management of threatened species. Reference intervals of 26 serum analytes were determined from 107 apparently healthy Amazon river dolphins (Inia geoffrensis) wild-caught in the Mamirauá Sustainable Development Reserve (3°3′S, 64°51′W), central Amazon, Brazil. No differences were detected between males and females or between pregnant and nonpregnant females. Calves had higher serum calcium than juveniles and adults, and alkaline phosphatase activity was higher in calves and juveniles than adults as a result of bone growth. Adults showed higher creatinine levels than juveniles due to higher body mass, and higher urea than calves. Positive correlation was found between body length and body weight with creatinine, urea, and alanine aminotransferase activity; whereas calcium and alkaline phosphatase and creatine kinase (CK) activities negatively correlated with these body parameters. Cardiac rate and respiratory frequency appear to have not correlated with any serum analyte, while stress level positively correlated with CK. Storage of frozen samples for 60 days at −80°C significantly altered 10 of the 19 analytes after one freeze–thaw cycle. Important differences were detected among age classes, stress level, and sample storage and should be taken into account before any clinical or physiological interpretations.     

Properties of hemocyanins isolated from Amazon river arthropods and molluscs

• 1. Hemocyanins from four organisms inhabiting the Amazon River were isolated and partially characterized.
• 2. Three arthropodan species (Dilocarcinus pagei cristatus, Silviocarcinus pardalinus andMacrobrachium amazonicum) possess hemocyanins whose subunit structure is remarkably simple. Regular and SDS polyacrylamide disc electrophoresis revealed predominantly single bands and no polymorphisms.
• 3. Oxygen-binding experiments showed that the three arthropodan hemocyanins possess large positive Bohr effects and pH dependence in the degree of subunit interaction.
• 4. The hemocyanin of one mollusc,Pila sp., was studied and its subunit size appears to be similar to that of other molluscan hemocyanins, i.e. a polypeptide of mol. wt 400,000. In the hemolymph,Pila hemocyanin probably exists as a mixture of 100 and 124S aggregates.
• 5. The oxygen binding properties of the large molecules ofPila hemocyanin are notable because of their low cooperativity and lack of a strong pH-dependence.

     

Effects of DOM photochemistry on bacterial metabolism and CO2 evasion during falling water in a humic and a whitewater river in the Brazilian Amazon

In the Amazon river system, the source of the large quantity of CO₂ evading from river surfaces remains unidentified. Photochemical transformation of dissolved organic matter (DOM) into dissolved inorganic carbon (DIC) and low molecular weight organic acids (LMWOAs) is a promising candidate. Few studies in the Amazon river system, and river systems in general, have attempted to quantify the contribution of these specific photoproducts to CO₂ evasion. We conducted photochemical degradation and ¹⁴C addition experiments to measure the rate of production and the impact on bacterial metabolism, respectively, in the black water Rio Negro and in the white water Rio Solimões during low water. We found statistically significant production of both photoproducts in the Rio Negro and none in Rio Solimões. We also found that two photochemically produced LMWOAs??acetic and formic acid??may play a significant role in bacterial metabolism in both rivers. Based on our experimental results, we estimate that photochemically produced CO₂, acetic acid and formic acid alone contribute to only 0.5% of the CO₂ evading from the Rio Negro. Due to our experimental set-up, analytical methods and time of sampling, we caution that our estimate is very conservative. More extensive research is needed before drawing conclusions on the contribution of photochemistry to CO₂ evasion from river surfaces of the Amazon basin.