Complete mitochondrial genomes offer insights into the evolutionary relationships and comparative genetic diversity of New Zealand’s iconic kiwi (Apteryx spp.)

ABSTRACT

Kiwis (Apterygidae) are an enigmatic family of flightless birds endemic to New Zealand. Apterygidae is made up of a single genus, Apteryx with five species, four of which are characterised as at risk of greater by the New Zealand Department of Conservation. These five species are further separated into two morphologically and genetically distinguishable clades, containing A.haastii, and A.owenii in one and A.rowi, A.mantelli, and A.australis in the other. We reconstructed 17 kiwi mitochondrial genomes from previously published genomic data, nine from A.rowi and eight from A.owenii. Mitochondrial diversity analyses uncovered low levels of genetic diversity consistent with their reduced ranges and conservation concern. We further used one of the assembled A.rowi mitochondrial genomes together with mitochondrial genomes from A.haastii, A.owenii, A.mantelli, and several other individuals from Palaeognathae to estimate the within and between clade divergence times of kiwis. Our study exemplifies how available published data can be used in novel ways to provide new and complementary evolutionary insights to previous studies.     

多枝柽柳气体交换特性研究

在美国柽柳（Tamarix L.）被列为臭名昭著的十大我来杂草之一,而在中国,它则作为一种濒危物种生存状况堪忧。对多枝柽柳（Tamarix ramosissima L bd.）气体交换进行研究,探讨其蒸汽压差（VPD）、叶水势、气孔导度（g）和水分利用效率（WUE）之间的联系,结果表明,柽柳之所以能在沙漠生存又能在美国河岸地带疯狂扩展,主要原因可能是：①柽柳属地下水湿生植物,发达的根系能直达地下水。②柽柳适应性生境很广,作为一种阳性树种,柽柳非常耐旱,能够在很低的叶水势（φ）条件下（-4.59Mpa）进行光合作用,而较低的光补偿点和暗呼吸速率又反映出其耐阴湿的特点。③灵敏的气孔适应性调整：其g对VPD的灵敏性随着干湿季其体内的水分状况变化而变化,调整蒸腾速率,从而影响其WUE;gs与φ成显著正相关（P≤0.05）;gs与WUE显著相关（P≤0.05）,但只有当gs处于正在下降的时候,光合作用和蒸腾作用两个交换过程受轻微限制时,可得到水消耗和CO2吸收的最优协调,WUE达到最大值。这些适应性调整可能是柽柳能在美国河岸地带疯狂扩展的主要原因。实验结果表明,柽柳完全能够适应荒漠生长环境,因而导致柽柳在我国处于濒危状况的根本原因不是传统认为的干旱的自然环境,而主要是人为因素造成地下水位下降以及过度砍伐所致。     

Effects of water vapour pressure deficit and stomatal conductance on photosynthesis,internal pressurization and convective flow in three emergent wetland plants

Internal pressurization and convective gas flow in emergent wetland plants is a function of the water vapour pressure deficit (WPD) and stomatal conductance (G _s) separating the external atmosphere from the internal aerenchyma. We have compared the effects of WPD and G _s under a range of light intensities on static pressures and convective flows in Phragmites australis, Typha orientalis and Baumea articulata. The capacity of the three species to generate flows per unit leaf area differed, being greatest in P. australisand lowest in B. articulata. In all three species, decreasing light intensity from full sunlight (2200 mol m^–2 s^–1 photosynthetically active photon flux density (PPFD)) to < 200 and < 10 mol m^–2 s^–1PPFD caused immediate decreases in photosynthetic assimilation, followed by more gradual decreases in transpiration and G _s. However, internal pressures and flows in the two low light intensities remained similar to values recorded in full sunlight. WPD was more significantly related to pressures and flows in P. australis and T. orientalis than G _s. In B. articulata, pressures increased at low G _s values but flow rates were unaffected, as predicted by earlier models describing pore size effects on pressures and flows. The data suggest that emergent macrophytes can maintain significant internal convection even at low light intensities, and this may be beneficial for nocturnal aeration, particularly in arid climates where the atmospheric humidity at night is low.     

The boundary layer and the apparent responses of stomatal conductance to wind speed and to the mole fractions of CO2 and water vapour in the air

The experiments and simulations reported in this paper show that, for stomata sensitive to both CO₂ and water vapour concentrations, responses of stomatal conductance (g^w_s) to boundary layer thickness have two components, one resulting from changes in intercellular CO₂ concentration (χ^c_i) and another from changes in leaf surface water vapour saturation deficit (D^w_s). The experiments and simulations also show that the boundary layer conductance (g^w_b) can significantly alter the apparent response of g^w_s to ambient air CO₂ mole fraction (χ^c_a) and water vapour mole fraction (χ^w_a). Because of the feedback loop involved the responses of g^w_s for χ^c_a and χ^w_a each include responses to both χ^c_i and D^w_s. The boundary layer alters the state of the variables sensed by the guard cells—i.e. χ^c_i and D^w_s—and so it is a source of feedback. Thus, when scaling up from responses of stomata to the response of g^w_s for a whole leaf, the effect of the boundary layer must be considered. The results indicate that, for given responses of g^w_s to χ^c_i and D^w_s, the apparent responses of g^w_s to D^w_a and χ^c_a depend on the size of the leaf and wind speed, showing that this effect of the boundary layer should be considered when comparing data measured under different conditions, or with different methods.     

Photosynthesis and Water Use Efficiency in Twenty Tropical Tree Species of Differing Succession Status in a Brazilian Reforestation

Leaf gas exchange characteristics were measured in twenty woody species that differ in succession status ranging from pioneer species (PS) to late succession species (LS) in a Brazilian rain-reforestation ecosystem. Photon-saturated photosynthetic rate, calculated per either a leaf area (P _NA) or a dry mass (P _NM) basis, differed among species. P _NA and P _NM were highest in PS and lowest in LS. Variation among species was 3-fold (from 7 to 23 mol m^–2 s^–1) for P _NA, and 5-fold (from 50 to 275 mol kg^–2 s^–1) for P _NM. The highest P _NA (23 mol m^–2 s^–1) and P _NM (275 mol kg^–2 s^–1) values were recorded in PS Croton urucurana, while the lowest P _NA (7 mol m^–2 s^–1) and P _NM (50 mol kg^–2 s^–1) values were recorded in LS Aspidosperma cylindrocarpon. A considerable overlap was recorded between PS and LS in values of stomatal conductance (g _s), transpiration rate (E), and leaf mass to area ratio (ALM). However, C. urucurana also showed highest g _s and E. P _NM was highly correlated with ALM in both PS and LS (r=–0.75 and –0.90, respectively). The high values of instantaneous transpiration efficiency (ITE) and intrinsic water use efficiency (WUE_i) were also observed in the PS when compared with the LS.     

Report on captive hatches of California condors (Gymnogyps californianus): 1983–1990

The California condor (Gymnogyps californianus) recovery plan entails increasing the reproductive rate via replacement-clutch manipulation and artificial incubation of eggs. During the period from 1983 to 1990, 37 eggs have been artificially incubated; 32 of these were known to be fertile and 28 hatched (fertility: 86.5%; hatchability: 87.5%).     

Recovery of photosynthesis from water stress in Eucalyptus pauciflora—a process in two stages

Abstract. Seedlings of Eucalyptus pauciflora Sieb. ex. Spreng. were stressed by withholding water. They were then rewatered, and the time course of recovery of photosynthesis was followed. Recovery always followed a distinct bi-phasic pattern. A first, rapid, stage of recovery commenced between 5 and 60 min after rewatering and was completed by between 30 min and four h after rewatering. Recovery in this stage always involved concurrent increases in stomatal conductance and the leaf's capacity to assimilate CO₂ at any intercellular partial pressure of CO₂ [ A(p_i) relationship]. This stage of rapid recovery was followed either by a constant or gradually declining rate of photosynthesis for the remainder of the light period. In plants kept to a normal diurnal cycle, a second stage of recovery occurred and was completed during the night following rewatering. In this second stage of recovery, the A(P_i) relationship recovered to 90–100% of prestress values. In contrast, the recovery of stomatal conductance was not complete by the first day after rewatering. In darkness, complete recovery of the A(p_i) relationship required as little as five h. If plants were kept in continuous high light, then between six and 16 h elapsed after rewatering before the second stage of recovery commenced. After this lag, almost complete recovery of the A(p_i) relationship was possible. These results indicate that water stress has two independent and parallel effects on the mesophyll capacity for photosynthesis. The first may be simply reversible when the plant is rewatered, while the second may involve damage to the photosynthetic machinery that requires protein synthesis for its reversal.     

Soil water deficits decrease the internal conductance to CO2 transfer but atmospheric water deficits do not

The internal conductance to CO₂ supply from substomatal cavitiesto sites of carboxylation poses a large limitation to photosynthesis.It is known that internal conductance is decreased by soil waterdeficits, but it is not known if it is affected by atmosphericwater deficits (i.e. leaf to air vapour pressure deficit, VPD).The aim of this paper was to examine the responses of internalconductance to atmospheric and soil water deficits in seedlingsof the evergreen perennial Eucalyptus regnans F. Muell and theherbaceous plants Solanum lycopersicum (formerly Lycopersiconesculentum) Mill. and Phaseolus vulgaris L. Internal conductancewas estimated with the variable J method from concurrent measurementsof gas exchange and fluorescence. In all three species steady-statestomatal conductance decreased by 30% as VPD increased from1 kPa to 2 kPa. In no species was internal conductance affectedby VPD despite large effects on stomatal conductance. In contrast,soil water deficits decreased stomatal conductance and internalconductance of all three species. Decreases in stomatal andinternal conductance under water deficit were proportional,but this proportionality differed among species, and thus therelationship between stomatal and internal conductance differedamong species. These findings indicate that soil water deficitsaffect internal conductance while atmospheric water deficitsdo not. The reasons for this distinction are unknown but areconsistent with soil and atmospheric water deficits having differingeffects on leaf physiology and/or root–shoot communication. Key words: Carbon dioxide, drought, internal conductance, mesophyll conductance, photosynthesis, stomatal conductance, transfer conductance, vapour pressure deficit, water deficit Received 11 October 2007; Revised 9 November 2007 Accepted 15 November 2007     

Importance of physical plant properties on methane transport through several rice cultivars

The transport rate of methane from a nutrient solution to the atmosphere via rice plants was controlled both by the methane concentration in the nutrient solution and by plant physiology. Measurements on 11 rice cultivars indicated that the conductance of the rice plant for methane increased as the plants developed. The conductance varied from 0.3±0.2 to 1.2±0.7 μmol min^-1 mM^-1 plant^-1 during the tillering stage, and from 0.6±0.3 to 2.5±0. 2 μmol min^-1 mM^-1 plant^-1 during the reproduction stage. Based on measurements of all plants, the conductance positively correlated with parameters of plant size. Conductance correlated best with stem inter-cellar volume at the tillering stage, and with root volume at the reproduction stage. For both stages taken together, the correlation between conductance and root volume was the most significant. The conductance could be approximated by a multiple linear regression using root volume and the length of root bundle. Higher conductance was found to generally associate with the plants with larger root volume, heavier root fresh weight. This revised version was published online in June 2006 with corrections to the Cover Date.     

The thermal energetics of an incubated chicken egg

I incubated chicken eggs using an artificial brood patch, which enabled me to measure the energy required to keep chicken eggs, 16–19 days old, warmer than the ambient air. To keep brood patch temperature (i.e. at the egg surface-brood patch interface) 9.4°C warmer than the ambient air, living chicken eggs require on average 541 mW, of which 403 mW is supplied by the parent, the remainder being supplied by the embryo. Killing the embryo reduces the power required to only 322 mW for the same elevation of the brood patch temperature, all of it supplied by the brood patch. Killing the embryo causes central egg temperature to decline by about 2.0°C. Contrary to widely held opinion, it is embryonic circulation, not embryonic metabolism that is the most important cause of elevated temperature of incubated eggs. The implications of this for incubation energetics are discussed.     

Effects of patchy stomatal closure on gas exchange measurements following abscisic acid treatment

Gas exchange data and images of leaf fluorescence were collected concurrently as stomata responded to abscisic acid (ABA) application. When 10^?5kmolm^?3 ABA was applied to the transpiration stream in a short pulse, stomatal conductance (g_s), photosynthesis (A) and intercellular CO2 concentration (C_i) decreased rapidly after a short lag period and became approximately constant after 2h. There was an apparent reduction in the A versus c1 relationship as stomata closed, but the data returned to the A versus C1 curve while stomatal conductance was constant or slowly rising during the second hour after ABA treatment. Larger amounts of ABA administered during the pulse caused larger deviations from the A versus c1 relationship. When 10^?7kmolm^?3 ABA was applied continuously through the transpiration stream, gs, A and Cⁱ decreased, but there was no substantial deviation from the A versus c{ curve. Fluorescence images were patchy as stomata closed for all experiments, but became slowly more uniform during the time that gas exchange was returning to the A versus Cj curve. The distribution of con-ductance among patches was not bimodal, and larger devi-ations from the A versus ct curve had greater ranges of pixel values and more pixel values representing low values of Cj during stomatal closure than did experiments show-ing small or no deviation. Estimates of A and gs from fluo-rescence images compared favourably with measured val-ues in most cases, suggesting that the patchy distributions of fluorescence were caused by patchy distributions of stomatal conductance and that apparent reductions in the A versus ct relationship were the result of these patchy stomatai distributions and not direct effects of ABA on mesophyll functioning. The data show that stomatal patches can be temporary and that patchiness may not be reflected in gas exchange data if the range of stomatal con-ductances is not large. These observations may explain some of the discrepancies among previous studies concerning the effect of ABA on the A versus Cⁱ relationship.