Spatial patterns of dicot diversity in Argentina

In this paper, we analyzed the taxonomic diversity of the Argentine dicots to evaluate their relationships with area, latitude, and longitude. We also evaluated species diversity and higher taxa diversity relationships. The families, genera and species diversity in Argentine dicots was not explained by the area of each province but it varied through latitudinal and longitudinal gradients. The taxonomic diversity of these plants increased from high to low latitudes and west–east longitudes. These patterns would explain why the main diversity centers are located in the North region of this country. As we expected the species diversity and higher taxa diversity showed a positive relationship. At this scale, higher taxa diversity could be use as surrogate for species diversity.     

Spatial heterogeneity and plant species richness at different spatial scales under rabbit grazing

Herbivores influence spatial heterogeneity in soil resources and vegetation in ecosystems. Despite increasing recognition that spatial heterogeneity can drive species richness at different spatial scales, few studies have quantified the effect of grazing on spatial heterogeneity and species richness simultaneously. Here we document both these variables in a rabbit-grazed grassland. We measured mean values and spatial patterns of grazing intensity, rabbit droppings, plant height, plant biomass, soil water content, ammonia and nitrate in sites grazed by rabbits and in matched, ungrazed exclosures in a grassland in southern England. Plant species richness was recorded at spatial scales ranging between 0.0001 and 150 m(2). Grazing reduced plant height and plant biomass but increased levels of ammonia and nitrate in the soil. Spatial statistics revealed that rabbit-grazed sites consisted of a mixture of heavily grazed patches with low vegetation and nutrient-rich soils (lawns) surrounded by patches of high vegetation with nutrient-poor soils (tussocks). The mean patch size (range) in the grazed controls was 2.1 +/- 0.3 m for vegetation height, 3.8 +/- 1.8 m for soil water content and 2.8 +/- 0.9 m for ammonia. This is in line with the patch sizes of grazing (2.4 +/- 0.5 m) and dropping deposition (3.7 +/- 0.6 m) by rabbits. In contrast, patchiness in the ungrazed exclosures had a larger patch size and was not present for all variables. Rabbit grazing increased plant species richness at all spatial scales. Species richness was negatively correlated with plant height, but positively correlated to the coefficient of variation of plant height at all plot sizes. Species richness in large plots (<25 m(2)) was also correlated to patch size. This study indicates that the abundance of strong competitors and the nutrient availability in the soil, as well as the heterogeneity and spatial pattern of these factors may influence species richness, but the importance of these factors can differ across spatial scales.     

Do biodiversity patterns in Dutch wetland complexes relate to variation in urbanisation,intensity of agricultural land use or fragmentation?

Red list species densities of birds (maximally 22 km⁻²), and angiosperms (maximally 39 km⁻²) were used as biodiversity indicators in 21 larger complexes of wetlands across the Netherlands. Their covariability with a range of indicators of human land use was assessed, including population, road and visitor density, area covered by agriculture, open water, forest and residential housing. Data were collected on the wetland complexes as well as for a perimeter with 10 km radius. In a principal components analysis (PCA) with all land use variables, it was found that the population-density-related complex of urbanisation, fragmentation (by roads), and intensity of fertilizer use together explained most of the variability present (i.e. the first PCA axis explained 50%), whilst land use within these complexes was second with an additional 19% and waterside recreation third with 12%. Red list bird species density did not correlate with that of angiosperms, nor with any of the indicators used. For the 13 complexes on organic peatland, we observed an increase in maximum red list angiosperm species density with the proportion of open marshland (P < 0.01, r ² > 0.55), which, in turn, was negatively and closely correlated with the first PCA axis reflecting an urbanisation gradient across the Netherlands.     

Fire survival of lowland tropical rain forest trees in relation to stem diameter and topographic position

The objective of this study was to relate patterns in forest structure, tree species diversity, and tree species composition to stem diameters and topography in unburned, once burned and twice burned lowland dipterocarp rain forests in East Kalimantan, Indonesia. To do this four unburned old growth forests were compared with three forests that burned once (1997/1998) and three forests that burned twice (1982/1983 and 1997/1998). Fire resulted in a strong reduction of climax tree density which was negatively related to tree diameter. However, a disproportionate reduction in small diameter understorey climax tree species occurred only after repeated fires. Climax tree species in both burned forest types were most common in swamps, river valleys and on lower slopes, while their density was much lower on places higher along hillsides. In unburned forest the opposite was observed, with climax tree density increasing steadily from swamp and river valleys to upper slopes and ridges. In contrast to climax trees, pioneer trees were abundant throughout the burned forest, with highest numbers on hill sides and ridges. Our results indicate that both diameter and topographic position of trees strongly affect their fire survival chances in tropical lowland forests.     

Stochastic approach to determine spatial patterns of lizard community on a desert island

One of the principal sources of error in identifying spatial arrangements is autocorrelation, since nearby points in space tend to have more similar values than would be expected by random change. When a Markovian approach is used, spatial arrangements can be measured as a transition probability between occupied and empty spaces in samples that are spatially dependent. We applied a model that incorporates first-order Markov chains to analyse spatial arrangement of numerical dominance, richness, and abundance on a lizard community at different spatial and temporal scales. We hypothesized that if a spatial dependence on abundance and richness exists in a diurnal desert community, then the Markov chains can predict the spatial arrangement. We found that each pair of values was dependent only on its immediate predecessor segment. In this sense, we found intergeneric differences at temporal and spatial scales of recurrence estimates. Also, in desert scrub, species show higher spatial aggregation and had lower species richness than at the island level; the inverse pattern occurred on rocky hillsides. At the species level, Uta stansburiana is the most abundant species in desert scrub, while Sauromalus slevini is the most abundant species on rocky hillsides. This report attempts to understand, using Markovian spatial models, the effect of nearby samples on local abundance and richness on different scales and over several seasons.     

中国跳鼠总科物种系统发育与分布格局

中国分布有跳鼠总科(Dipodoidea)动物3科12属22种,是世界上跳鼠总科物种丰富度最高的国家之一.近年来,随着新种的发现和分类地位的修正,我国跳鼠总科物种的系统发育关系和分布格局也亟待更新.本文通过GenBank下载12个特定基因,串联构建基因矩阵,以贝叶斯法和最大似然法重建22个物种的系统发育树,明确了我国跳...     

Species richness patterns and the determinants of larch forests in China

Larch forests are important for species diversity, as well as soil and water conservation in mountain regions. In this study, we determined large-scale patterns of species richness in larch forests and identified the factors that drive these patterns. We found that larch forest species richness was high in southern China and low in northern China, and that patterns of species richness along an elevational gradient depend on larch forest type. In addition, we found that patterns of species richness in larch forests are best explained by contemporary climatic factors. Specifically, mean annual temperature and annual potential evapotranspiration were the most important factors for species richness of tree and shrub layers, while mean temperature of the coldest quarter and anomaly of annual precipitation from the Last Glacial Maximum to the present were the most important for that of herb layer and the whole community. Community structural factors, especially stand density, are also associated with the species richness of larch forests. Our findings that species richness in China''s larch forests is mainly affected by energy availability and cold conditions support the ambient energy hypothesis and the freezing tolerance hypothesis.     

铜壁关自然保护区种子植物物种丰富度的海拔梯度格局——兼论物种密度的计算方法

利用对铜壁关自然保护区多次考察形成的种子植物数据库,结合通过GIS生成的区域数字高程模型(DEM)数据,分析了该区域种子植物物种丰富度及物种密度沿海拔梯度的变化特征。结果表明, 科、属、种的丰富度随海拔的升高,先增加后降低,在中海拔区域达到最大值,科、种的丰富度最大值出现在海拔1400~1800 m的范围内,属的丰富度最大值出现在1000~1400 m的海拔范围。科、属、种的密度随海拔升高先下降后上升,再下降后再上升;且最大值都出现在保护区最高海拔3000~3400 m的范围内。物种丰富度和物种密度分布格局明显受到海拔梯度的影响,海拔梯度综合了水热条件等诸多因素。铜壁关种子植物科、属、种水平上的物种丰富度的海拔分布格局符合中域效应假说;同时还对目前常用的计算物种密度的"对数模型"方法的普遍适用性提出质疑。     

Longitudinal patterns of plant diversity in the North American boreal forest

Spatial patterns of plant diversity in the North American boreal forest were examined according to three plant life forms (woody plants, herbaceous plants, and bryophytes) and two taxonomic levels (species and genus), using sixty 9-ha plots sampled in white spruce (Picea glauca (Moench) Voss) and black spruce (Picea mariana (P. Mill.) B.S.P.) ecosystems along a transcontinental transect from the Pacific coast eastwards to the Atlantic coast. The patterns of inventory diversity (represented by alpha diversity), differentiation diversity (represented by the similarity index, habitat-heterogeneity index, similarity decay rate, and length of the first axis in detrended correspondence analysis), and pattern diversity (represented by the mosaic diversity index) were assessed along the transect in both ecosystem types. At the stand level, central North America had the highest alpha diversity in terms of the number of species or genera, and western North America had a higher alpha diversity than eastern North America. At the continental scale, herbaceous plants had the highest beta diversity in terms of floristic change from the eastern to western North America, bryophytes had the lowest beta diversity, and woody plants were in the middle, regardless of ecosystem type and taxonomic level. Central North America had the lowest mosaic diversity across the boreal transect of North America. The white spruce ecosystems had a higher alpha diversity than the black spruce ecosystems regardless of plant life form, taxonomic level and geographic location. The white spruce ecosystems tended to have more bryophytes, less woody plants, and higher species:genus ratio than the black spruce ecosystems. In general, the white spruce and black spruce ecosystems shared the same patterns in diversity changes at different spatial scales, plant life forms, and taxonomic levels across the transect studied. The existing patterns of plant diversity in the North American boreal forest area resulted from a combination of ecological processes and spatial configuration.     

Physiological variation in insects: large-scale patterns and their implications

In this paper we demonstrate how broad scale comparative physiology has an important role to play in informing a variety of assumptions made in macroecology. We do so by examining large-scale geographic variation in insect development, thermal tolerance and metabolic rate. From these studies, and those from the literature on insect water loss and thermoregulation, we show that there is often a bias to the geographic extent of available empirical data. Studies of cold hardiness are most usually undertaken at high latitudes, while investigations of upper thermal tolerances and water loss are most common in warm arid regions. Likewise, we demonstrate that much variation in insect physiological tolerances is partitioned at higher taxonomic levels, which has important implications for comparative physiology. Intriguingly, data on the full range of variables we review are available for only three species. We also show that, despite its importance, body size is regularly reported in only some kinds of investigations (metabolic rate, water loss rate), whereas in others (upper lethal temperature, cold hardiness, development) this variable is often ignored. In short, although large-scale comparative physiology can contribute considerable understanding to both physiology and ecology, there is much that remains to be done.     

Vegetation composition of Lolium perenne-dominated grasslands under organic and conventional farming

Agricultural intensification has caused a decline of semi-natural grasslands and loss of botanical diversity, making agricultural fields dominated by Lolium perenne the main grassland system in large areas of Europe. Increased insight into the factors determining their vegetation composition and plant species richness is needed to improve the effectiveness of agri-environment schemes and to substantiate the benefits of organic over conventional agriculture. Our aims were (1) to determine the difference in vegetation composition (including species richness) between Lolium perenne-dominated fields of conventional and organic farms in a case study region in The Netherlands, and (2) to identify the soil and management related drivers behind this difference.We collected vegetation, soil and management data in grasslands of dairy farms under conventional or organic management (45 fields in total), and used multivariate statistics to determine the effect of fertilisation rates, grazing and cutting regime, and soil properties on plant species composition. In a next step we determined to what extent these abiotic drivers differ between organic and conventional farms.On average the organic fields appeared to have a c. 30% higher plant species richness compared to the conventional ones. Vegetation composition was most strongly influenced by groundwater level and nitrogen and phosphorus fertilisation rates, and to a lesser extent by plant-available soil potassium, mowing date, total soil nitrogen, potassium fertilisation rate, age of each field, and livestock (cow or sheep). In general, a low fertilisation rate, high groundwater level, late mowing, low level of plant-available potassium, high level of total soil nitrogen, old fields and the presence of sheep promote a high species richness. However, of these variables only nitrogen fertilisation rate and groundwater level differ significantly between the organic and conventional farms and are therefore likely to be the abiotic drivers of the difference in species richness and vegetation composition between the farm types. Of these two, the difference in nitrogen fertilisation rate is a direct result of a difference in management philosophy, but the difference in groundwater level is not. We hypothesize that the latter difference is caused by economic drivers, whereby a less productive soil is an incentive for a changeover to organic farming. If this is the case indeed, the application of agri-environment schemes would be most effective in less productive (and naturally more species-rich) sites.     

The contribution of common and rare species to plant species richness patterns: the effect of habitat type and size of sampling unit

Understanding how overall patterns of spatial variation in species richness are affected by distributional patterns of species has been an area of growing concern. In the present study, we investigated the relative importance of common and rare species as contributors in overall plant species richness. We further examined if the effects of common or rare species in richness patterns are affected by the size of the sampling units and if the observed patterns hold at different habitats. We used a dataset of 5,148 higher plant species distributed across 16,114 sampling plots located in 240 sites of the NATURA 2000 network of Greece. We ranked all species based on the number of sites they occupied and we developed a common to rare and a rare to common sequence. We correlated those sequences with cumulative species distributions. We performed this analysis in nine different sizes of sampling units and in three different datasets referring to (a) all habitat types together, (b) coniferous habitats only and (c) alpine habitats only. Our analysis showed that despite the proportionally higher numbers of restricted species, widespread species make a greater contribution to overall richness patterns and that this observed pattern does not depend on the size of the sampling units. Moreover, the observed pattern stands for different habitat types. Our findings support the generality of this pattern and highlight the importance of widespread species as adequate indicators of biodiversity patterns at various habitat types. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Spatial and temporal variation of fungal endophytic richness and diversity associated to the phyllosphere of olive cultivars

Fungal endophytes are micro-organisms that colonize healthy plant tissues without causing disease symptoms. They are described as plant growth and disease resistance promoters and have shown antimicrobial activity. The spatial-temporal distribution of endophytic communities in olive cultivars has been poorly explored. This study aims to investigate the richness and diversity of endophytic fungi in different seasons and sites, within the Alentejo region, Portugal. Additionally, and because the impact of some pathogenic fungi (e.g. Colletotrichum spp.) varies according to olive cultivars; three cultivars, Galega vulgar, Cobrançosa and Azeiteira, were sampled. 1868 fungal isolates were identified as belonging to 26 OTUs; 13 OTUs were identified to the genera level and 13 to species level. Cultivar Galega vulgar and season autumn showed significant higher values in terms of endophytic richness and diversity. At site level, Elvas showed the lowest fungal richness and diversity of fungal endophytes. This study reinforces the importance of exploring the combined spatio-temporal distribution of the endophytic biodiversity in different olive cultivars. Knowledge about endophytic communities may help to better understand their functions in plants hosts, such as their ecological dynamics with pathogenic fungi, which can be explored for their use as biocontrol agents.     

Latitudinal patterns in European ant assemblages: variation in species richness and body size

Using published distributions of 65 species from the British Isles and northern Europe, we show that ant assemblages change with latitude in two ways. First, as commonly found for many types of organisms, the number of ant species decreased significantly with increasing latitude. For Ireland and Great Britain, species richness also increased significantly with region area. Second, although rarely demonstrated for ectotherms, the body size of ant species, as measured by worker length, increased significantly with increasing latitude. We found that this body-size pattern existed in the subfamily Formicinae and, to a lesser extent, in the Myrmicinae, which together comprised 95% of the ant species in our study area. There was a trend for formicines to increase in size with latitude faster than myrmicines. We also show that the pattern of increasing body size was due primarily to the ranges of ant species shifting to higher latitudes as their body sizes increased, with larger formicines becoming less represented at southerly latitudes and larger myrmicines becoming more represented at northerly latitudes. We conclude by discussing five potential mechanisms for generating the observed body-size patterns: the heat-conservation hypothesis, two hypotheses concerning phylogenetic history, the migration-ability hypothesis, and the starvation-resistance hypothesis.     

Patterns of spatial and temporal variation of macrofauna under boulders in a sheltered boulder field

Abstract Spatial and temporal patterns of abundance of animals and plants must be quantified before models to explain distributions can be developed. These patterns also provide essential data for measuring potential effects of environmental disturbances. Studies in many different habitats have shown that most organisms, particularly invertebrates, have highly variable and interactive patterns of abundance, with much variability at the smallest temporal and spatial scales. Intertidal boulder fields in New South Wales, Australia, support a diverse fauna, many species of which are relatively rare. These habitats are commonly found near rock‐platforms and in sheltered estuaries and are subjected to many human disturbances. Although there have been a few studies on the fauna in boulder fields, none has documented variability of the assemblage using multivariate and univariate techniques and most studies have not incorporated different spatial and temporal scales. This study quantifies spatial variation at three scales (metres, tens of metres alongshore and tens of metres upshore) and temporal variation at two scales (3 months and 2 years) of the assemblage of molluscs and echinoderms in a sheltered boulder field subjected to little natural or human disturbance. Multivariate analyses revealed that each site contained a distinct assemblage, mainly due to the relative abundances of a few species. Most species, those generally only found under boulders and common, widespread species, had considerable spatial variability in abundances, with more than 90% measured at the smallest scale, that is metre to metre within a site. Changes in abundances over 3 months or 2 years varied among species and sites in unpredictable ways. These data show that sampling designs to measure impacts on these fauna will need to be complex and must incorporate a number of spatial and temporal scales if they are to be able to detect impact against such a variable background.     

Elevational patterns of functional diversity and trait of Delphinium (Ranunculaceae) in Hengduan Mountains,China

Elevational patterns of trait occurrence and functional diversity provide an important perspective for understanding biodiversity. However, previous studies have mostly examined functional diversity at the community scale. Here, we examined large-scale patterns of trait occurrence and functional diversity in Delphinium along an elevational gradient from 1000 to 5700 m in the Hengduan Mountains, SW China. Elevational distribution and trait data of 102 Delphinium species were compiled to evaluate the patterns of interspecific traits, species richness, and functional diversity. We found that the distribution of species richness showed a unimodal curve that peaked between 3500 and 4000 m; functional diversity and traits showed different patterns along an elevational gradient. The functional diversity increased at a lower rate along an elevation gradient, whereas species richness continued to increase. Species with large ranges and non-endemic species were most affected by geometric constraints. Richness of species endemic to the Hengduan Mountains peaked at higher elevations, likely due to increased speciation and restricted dispersion under alpine conditions. We conclude that the middle elevation region is not only the functionally richest but also the most functionally stable region for Delphinium, which could be insurance against environmental change. Extreme conditions and strong environmental filters in an alpine environment may cause the convergence of species traits, which could relate to reducing nutrient trait investment and increasing reproductive trait investment. We conclude that large-scale studies are consistent with previous studies at the community scale. This may indicate that the relationship between functional diversity and species richness across different scales is the same.     

Patterns in species associations in plant communities: the importance of scale

Abstract. Present discussions on competitive interactions and the occurrence of predictable patterns in species composition – including assembly rules – are likely to benefit from appropriate analyses of the spatial structure in plant communities. We suggest such an analysis when we specifically want to detect scale regions where fine-scale local processes may affect the spatial pattern of species composition. We combine indirect ordination in the form of Detrended Correspondence Analysis (DCA) and geostatistics in the form of variography. The species abundance data in the sampled quadrats are summarized as positions on the axes in the ordination. Each axis is used as a regionalized variable in the variography to obtain the spatial dependence of the quadrats. The spatial pattern found will suggest the relevant scale region in which to perform an analysis of species associations. A significant spatial dependence (the ‘range’ in geostatistical jargon) will define the size of a sampling plot that will minimize both the problem of being too small and thus having the risk of oversampling of e.g. clonal individuals and of being too large which will risk including individuals that do not interact. We also suggest that plots are spaced at least a ‘range’ apart to insure spatial and statistical independence. Comparisons of species compositions in such plots will reveal any positive or negative associations between species on a scale where these should reflect species-species interactions. To illustrate the method it is applied to three different data sets from two different plant communities.     

Effects of regular and irregular temporal patterns of disturbance on biomass accrual and species composition of a subtidal hard-bottom assemblage

Assessing patterns of species distribution and abundance is important to understand the driving processes of, and predict future changes in, biodiversity. To this date, ecological studies have been mainly designed to investigate the effects of the mean magnitude of predictor variables, although ecological factors naturally vary in space and time. In a nine month long field experiment, we tested the effects of different temporal patterns (regular, lowly and highly irregular) in biomass removal (=disturbance event) on the diversity, species composition, and biomass accrual of macrobenthic assemblages grown on 15 × 15 cm² PVC-panels. For each pattern of disturbance, disturbance events were timed at three sequences to control for possible confounding effects with recruitment patterns. Disturbance intensity was kept identical among treatments. Assemblages developed in the absence of disturbance for 3 months prior to a 150-day manipulation period, during which the biomass from 20% of the panel area was removed at each of ten disturbance events. Additional undisturbed settlement panels were deployed in the field to assess monthly recruitment rates and species succession over a one year period. Disturbance (i) reduced biomass and total species cover, (ii) changed species composition during the first half of the manipulation period significantly, and (iii) was without effect on species richness and evenness. Irregular disturbance regimes enhanced the abundance of the ascidian Ciona intestinalis, biomass accrual, and total species cover of assemblages relative to the regular disturbance regime, but had either no or only transient effects on diversity and species composition, respectively. Neither the degree of irregularity in disturbance nor the sequence of disturbance events affected any of the response variables significantly. Recruitment of species was strongly seasonal with almost only diatoms recruiting during winter, while recruitment was most intense during summer. Our results suggest that the temporal patterns of predictor variables might be of low explanatory power for the variance of responses in communities with seasonal recruitment patterns that are exposed to a high level of disturbance. Thus the need to include temporal patterns of predictor variables in experimental designs may depend on community dynamics and the characteristics of the process under investigation. S. Wollgast and M. Molis contributed equally to this work.