Meta-Analysis of the Detection of Plant Pigment Concentrations Using Hyperspectral Remotely Sensed Data

Passive optical hyperspectral remote sensing of plant pigments offers potential for understanding plant ecophysiological processes across a range of spatial scales. Following a number of decades of research in this field, this paper undertakes a systematic meta-analysis of 85 articles to determine whether passive optical hyperspectral remote sensing techniques are sufficiently well developed to quantify individual plant pigments, which operational solutions are available for wider plant science and the areas which now require greater focus. The findings indicate that predictive relationships are strong for all pigments at the leaf scale but these decrease and become more variable across pigment types at the canopy and landscape scales. At leaf scale it is clear that specific sets of optimal wavelengths can be recommended for operational methodologies: total chlorophyll and chlorophyll a quantification is based on reflectance in the green (550–560nm) and red edge (680–750nm) regions; chlorophyll b on the red, (630–660nm), red edge (670–710nm) and the near-infrared (800–810nm); carotenoids on the 500–580nm region; and anthocyanins on the green (550–560nm), red edge (700–710nm) and near-infrared (780–790nm). For total chlorophyll the optimal wavelengths are valid across canopy and landscape scales and there is some evidence that the same applies for chlorophyll a.     

The spectral responses of a submerged plant <Emphasis Type="Italic">Vallisneria spiralis</Emphasis> with varying biomass using spectroradiometer

The relationship between land features and their spectral characteristics is a key for the interpretation of remote sensing images. This study was designed to investigate the spectral responses of Vallisneria spiralis, a common submerged aquatic plant in Shanghai, with varying biomass both in the laboratory and in the Middle Lake section of a field-scale constructed wetland, using a FieldSpec™ Pro JR Field Portable Spectroradiometer. The results showed that the reflectance rate of V. spiralis increased with its increasing biomass, and this was exhibited both at the visible band (500–650 nm) and the near infrared band (700–900 nm). The water environment influenced the reflectance rate and the primary differences between the laboratory and field results mainly occurred at the near-infrared band (700–900 nm). A regression analysis was carried out between the biomass of V. spiralis and the reflectance rate at the wavelengths of QuickBird™ bands where the biomass responded most strongly. The results of this analysis showed a clear linear relationship by which the biomass of V. spiralis could be quantitatively deduced from the reflectance rate measured in situ. The implications of this observation, in terms of the ability of hyperspectral remote sensing to estimate and monitor the distribution and dynamics of submerged aquatic vegetation on a large scale, are discussed. Handling editor: S. M. Thomaz     

干旱胁迫下雷竹叶片叶绿素的高光谱响应特征及含量估算

植物叶片的反射光谱特征与叶绿素含量密切相关。以重要的笋用竹种雷竹(Phyllostachys violascens)为研究对象,采用盆栽及控水试验方法研究了2年生雷竹在干旱胁迫条件下冠层叶片反射光谱的响应特征,分析了叶片叶绿素含量与不同波段光谱反射率一阶微分值以及光谱特征参数之间的相关关系,并以雷竹叶绿素含量敏感波段及构建的植被指数与叶绿素含量进行了拟合。结果表明,重度缺水处理后雷竹叶片叶绿素含量显著降低,在可见光区叶片光谱反射率随叶绿素含量的降低而增加,以波长493、639、693、756 nm等处的光谱反射率一阶微分值与叶绿素含量的相关性较高。雷竹叶片叶绿素含量与光谱特征参数如绿峰反射率、红谷反射率、蓝边面积、绿峰面积之间的相关性较高。与已有的植被指数相比基于雷竹叶绿素含量敏感波段修正后的植被指数与叶绿素含量相关性优于原植被指数。基于反射率一阶微分值构建的多元回归方程以及修正的绿色归一化植被指数(m GNDVI)构建的回归方程拟合效果较好,为雷竹叶绿素含量的较优估算方程。研究结果可以为雷竹叶绿素含量的快速无损测定以及季节性干旱条件下雷竹林的科学经营及灾后评估提供依据。     

Monitoring leaf photosynthesis with canopy spectral reflectance in rice

Non-destructive and rapid method for assessment of leaf photosynthetic characteristics is needed to support photosynthesis modelling and growth monitoring in crop plants. We determined the quantitative relationships between leaf photosynthetic characteristics and canopy spectral reflectance under different water supply and nitrogen application rates. The responses of reflectance at red radiation (wavelength 680 nm) to different water contents and nitrogen rates were parallel to those of leaf net photosynthetic rate (P _N). The relationships of reflectance at 680 nm and ratio index of R(810,680) (near infrared/red, NIR/R) to P _N of different leaf positions and leaf layers in rice indicated that the top two full leaves were the best leaf positions for quantitative monitoring of leaf P _N with remote sensing technique, and the ratio index R(810,680) was the best ratio index for evaluating leaf photosynthetic characteristics in rice. Testing of the models with independent data sets indicated that R(810,680) could well estimate P _N of top two leaves and canopy leaf photosynthetic potential in rice, with the root mean square error of 0.25, 0.16, and 4.38, respectively. Hence R(810,680) can be used to monitor leaf photosynthetic characteristics at different growth stages of rice under diverse growing conditions.     

水稻氮素营养高光谱遥感诊断模型

对水稻氮素含量与原始光谱反射率、一阶微分光谱以及高光谱特征参数间的相关性进行了分析,并构建和验证了以遥感参数为自变量的水稻氮素营养诊断模型.结果表明：氮素含量在水稻各器官中总的变化趋势为茎<鞘<穗<叶;各器官在可见光波段的光谱反射能力为叶<穗<鞘<茎,在近红外波段则与此相反.以波长796.7 nm处的光谱反射率和738.4 nm处的一阶微分光谱反射率为自变量的线性模型和指数模型的决定系数（R²）分别为0.7996和0.8606,二者均能较好地诊断水稻氮素营养,但最适合诊断水稻氮素含量的拟合模型是以植被指数的归一化变量（SD_r-SD_b）/（SD_r+SD_b）为自变量构建的水稻氮素营养高光谱遥感诊断模型［y=365871+639323（SD_r-SD_b）/（SD_r+SD_b）,R₂＝0.8755,RMSE＝0.2372,相对误差＝11.36％］,该模型可定量诊断水稻氮素营养.     

基于高光谱的苹果果期冠层光谱特征及其果量估测

苹果冠层光谱特征是苹果树遥感生理监测和生产管理的重要依据。对栖霞市苹果果期的冠层反射光谱进行实测,结合数码照相技术探明了苹果果期的反射光谱特性和敏感波段,并通过敏感波段与果树比指标建立回归模型,实现了对苹果冠层果量(果树比)的无损估测。结果表明:苹果树果期冠层光谱曲线总体表现为对蓝光和红光的吸收及对绿光的反射,在近红外750—1300nm之间表现为强烈的反射,且在1650nm和2200nm附近呈现两个反射峰。选择435、670、730、940、1140nm和1480nm等6个波段为苹果果期的敏感波段。利用这些波段分别构建了差值、比值及归一化植被指数,筛选了最佳光谱参数,进而构建了果量(果树比)估测模型,经筛选验证确定苹果果量的最佳估测模型为:y=0.0086[NDVI(940,730)]2-1.0934NDVI(940,730)+0.3209。模型为苹果果期果量的精确估测提供了比较快捷的方法途径。     

三种植被冠层二向反射分布函数模型的比较

随着定量遥感技术的发展, 描述森林冠层二向反射分布函数(BRDF)的机理模型越来越多。该研究采用3种植被冠层BRDF模型——DART模型、4SCALE模型和MGEOSAIL模型, 模拟了不同郁闭度样地在红光、近红外波段各个观测角度下的场景反射率, 并比较分析了不同BRDF模型的适用性和局限性。结果表明: MGEOSAIL模型只适于模拟样地郁闭度较小、林木个体较大条件下的场景反射率, 且热点效果不十分明显; DART模型和4SCALE模型适于任何郁闭度条件下的场景反射率的模拟, 并且精度较高; 4SCALE模型模拟的场景反射率介于DART模型模拟的1次散射与5次散射之间。这3种模型在模拟近红外波段的场景反射率时, 均存在“碗边”效应。     

The effect of colour of the substrate on the landing and oviposition behaviour of the cabbage root fly

Field and laboratory experiments were made in order to understand the relation between the spectral characteristic of a substrate and its attractiveness for Delia radicum (L.) (Diptera: Anthomyiidae) flies to land or oviposit. Landing females preferred substrates with high reflectance of green and particularly of yellow wavelengths, but substrates with a high proportion of the blue and green reflectance simultaneously (light blue and white) were also very attractive. Unattractive substrates had either low reflectance across the whole insect-visible spectrum (dark blue) or increased reflectance only in orange or red region of the spectrum (red) or a large proportion of UV reflectance (aluminium). Landing males were most attracted to the substrates with the highest total reflection. Oviposition attractiveness of a substrate grew with an increase in the proportion of reflectance in the blue and a decrease in the green regions of the spectrum. In addition, the oviposition attractiveness increased with increasing total reflection and contrast with the background, and decreased with a high proportion of UV reflectance.     

Use of CC traps with different trap base colors for silverleaf whiteflies (Homoptera: Aleyrodidae), thrips (Thysanoptera: Thripidae), and leafhoppers (Homoptera: Cicadellidae)

During 1996, 1997, and 1999, studies were conducted in cotton, sugar beets, alfalfa, yardlong bean, and peanut fields to compare insect catches in CC traps equipped with different trap base colors. The studies were conducted in southwestern United States, China, and India. The nine colors, white, rum, red, yellow, lime green, spring green, woodland green (dark green), true blue, and black, varied in spectral reflectance in the visible (400-700 nm) and near-infrared (700-1050 nm) portions of spectrum. Lime green, yellow, and spring green were the three most attractive trap base colors for silverleaf whitefly, Bemisia argentifolii Bellows & Perring, and leafhopper, Empoasca spp. adults. The three trap base colors were moderately high in the green, yellow, and orange spectral regions (490-600 nm), resembling the spectral reflectance curve of the abaxial (underleaf) surfaces of green cotton leaves. True blue and white were the most attractive trap base colors for western flower thrips, Frankliniella occidentalis (Pergande), adults. The true blue and white trap bases were moderately high in the blue spectral region (400-480 nm).     

联合GF-6和Sentinel-2红边波段的森林地上生物量反演

光谱反射率能反映地物差异,是森林地上生物量（Aboveground Biomass,AGB）遥感反演的理论基础。红边波段处于近红外与红光波段交界处快速变化的区域,能对植被冠层结构和叶绿素含量的微小变化做出快速反应,对植被生长状况较敏感。研究以GF-6和Sentinel-2多光谱影像作为数据源,结合野外调查AGB数据,构建落叶松和樟子松AGB线性和非线性估测模型,通过比较模型精度选择最优模型进行森林AGB反演和空间分布制图。结果表明：GF-6和Sentinel-2影像红边波段反射率与落叶松、樟子松AGB均呈显著相关（P<0.05）,红边波段对AGB估测较敏感。多变量估测模型整体估测效果优于单变量模型,所有模型中多元线性回归模型取得了最优的决定系数（落叶松R²=0.66,樟子松R²=0.65）和最低的均方根误差（落叶松RMSE=31.45 t/hm²,樟子松RMSE=54.77 t/hm²）。相比单个数据源,联合GF-6和Sentinel-2影像构建的多元线性回归模型估测效果得到了显著提升,模型RMSE对于落叶松和樟子松AGB估测分别最大降低了22.9%和11.2%。增加红边波段进行AGB估测能显著提高模型估测精度,三组数据源分别加入红边波段信息后进行建模,模型RMSE得到了显著降低。GF-6拥有800 km观测幅宽和高效的重访周期,可以快速地提供大尺度时间序列数据,在森林地上生物量反演和动态监测方面有着很大潜力。     

基于光谱参数对小白菜叶片镉含量的高光谱估算

为实现利用高光谱技术快速、准确、无损地检测叶类蔬菜叶片重金属镉污染情况,通过采用室内盆栽试验,检测了小白菜在6个不同的镉浓度梯度0 mg/kg(CK)、0.5 mg/kg(T1)、1 mg/kg(T2)、5 mg/kg(T3)、10 mg/kg(T4)和20 mg/kg(T5)下的叶片高光谱反射率及其镉含量。利用相关分析和逐步回归的统计方法对叶片原光谱、一阶导数光谱和光谱参数与镉含量进行统计分析,确定了反演叶片镉含量的敏感光谱参数,并建立了估算叶片镉含量的参数模型。结果表明:(1)在540 nm附近和红外区域,叶片光谱反射率随着处理浓度的增加呈下降趋势。T1组叶片光谱与对照组的光谱没有明显的变化差异;(2)原光谱与镉含量的敏感波段主要在690—1300 nm,相关系数最高的波段是782 nm。一阶微分光谱与镉含量的敏感波段在黄边、红外、近红外和远红外范围均有分布;(3)反映植物色素、水含量和细胞结构的参数MCARI(叶绿素吸收反射修正指数Modified Chlorophyll Absorption Reflectance Index),SDy(黄边面积Yellow Edge Area),WI(水质指数Water Index),DCWI(病态水分胁迫指数Disease Water Stress Index),SDr(红边面积Red Edge Area)和Dr(红边幅值The Amplitude of the Red Edge)可分别作为反演镉含量的敏感光谱参数,其倒数回归模型能够较好地反演镉污染下小白菜叶片的镉含量;(4)镉胁迫处理15 d时,建立的SDr的倒数模型估算处理30 d时小白菜叶片镉含量的效果最优。研究表明红边面积参数可以用于估算小白菜叶片的镉含量,可为评价小白菜的食用安全提供科学方法。     

Plant ecophysiological processes in spectral profiles: perspective from a deciduous broadleaf forest

The need for progress in satellite remote sensing of terrestrial ecosystems is intensifying under climate change. Further progress in Earth observations of photosynthetic activity and primary production from local to global scales is fundamental to the analysis of the current status and changes in the photosynthetic productivity of terrestrial ecosystems. In this paper, we review plant ecophysiological processes affecting optical properties of the forest canopy which can be measured with optical remote sensing by Earth-observation satellites. Spectral reflectance measured by optical remote sensing is utilized to estimate the temporal and spatial variations in the canopy structure and primary productivity. Optical information reflects the physical characteristics of the targeted vegetation; to use this information efficiently, mechanistic understanding of the basic consequences of plant ecophysiological and optical properties is essential over broad scales, from single leaf to canopy and landscape. In theory, canopy spectral reflectance is regulated by leaf optical properties (reflectance and transmittance spectra) and canopy structure (geometrical distributions of leaf area and angle). In a deciduous broadleaf forest, our measurements and modeling analysis of leaf-level characteristics showed that seasonal changes in chlorophyll content and mesophyll structure of deciduous tree species lead to a seasonal change in leaf optical properties. The canopy reflectance spectrum of the deciduous forest also changes with season. In particular, canopy reflectance in the green region showed a unique pattern in the early growing season: green reflectance increased rapidly after leaf emergence and decreased rapidly after canopy closure. Our model simulation showed that the seasonal change in the leaf optical properties and leaf area index caused this pattern. Based on this understanding we discuss how we can gain ecophysiological information from satellite images at the landscape level. Finally, we discuss the challenges and opportunities of ecophysiological remote sensing by satellites.

     

Imaging of the Blue,Green, and Red Fluorescence Emission of Plants: An Overview

An overview is given on the fluorescence imaging of plants. Emphasis is laid upon multispectral fluorescence imaging in the maxima of the fluorescence emission bands of leaves, i.e., in the blue (440 nm), green (520 nm), red (690 nm), and far-red (740 nm) spectral regions. Details on the origin of these four fluorescence bands are presented including emitting substances and emitting sites within a leaf tissue. Blue-green fluorescence derives from ferulic acids covalently bound to cell walls, and the red and far-red fluorescence comes from chlorophyll (Chl) a in the chloroplasts of green mesophyll cells. The fluorescence intensities are influenced (1) by changes in the concentration of the emitting substances, (2) by the internal optics of leaves determining the penetration of excitation radiation and partial re-absorption of the emitted fluorescence, and (3) by the energy distribution between photosynthesis, heat production, and emission of Chl fluorescence. The set-up of the Karlsruhe multispectral fluorescence imaging system (FIS) is described from excitation with UV-pulses to the detection with an intensified CCD-camera. The possibilities of image processing (e.g., formation of fluorescence ratio images) are presented, and the ways of extraction of physiological and stress information from the ratio images are outlined. Examples for the interpretation of fluorescence images are given by demonstrating the information available for the detection of different developmental stages of plant material, of strain and stress of plants, and of herbicide treatment. This novel technique can be applied for near-distance screening or remote sensing.     

Simple luminosity normalization of greenness, yellowness and redness/greenness for comparison of leaf spectral profiles in multi-temporally acquired remote sensing images

Observation of leaf colour (spectral profiles) through remote sensing is an effective method of identifying the spatial distribution patterns of abnormalities in leaf colour, which enables appropriate plant management measures to be taken. However, because the brightness of remote sensing images varies with acquisition time, in the observation of leaf spectral profiles in multi-temporally acquired remote sensing images, changes in brightness must be taken into account. This study identified a simple luminosity normalization technique that enables leaf colours to be compared in remote sensing images over time. The intensity values of green and yellow (green+red) exhibited strong linear relationships with luminosity (R2 greater than 0.926) when various invariant rooftops in Bangkok or Tokyo were spectralprofiled using remote sensing images acquired at different time points. The values of the coefficient and constant or the coefficient of the formulae describing the intensity of green or yellow were comparable among the single Bangkok site and the two Tokyo sites, indicating the technique's general applicability. For single rooftops, the values of the coefficient of variation for green, yellow, and red/green were 16% or less (n=6-11), indicating an accuracy not less than those of well-established remote sensing measures such as the normalized difference vegetation index. After obtaining the above linear relationships, raw intensity values were normalized and a temporal comparison of the spectral profiles of the canopies of evergreen and deciduous tree species in Tokyo was made to highlight the changes in the canopies' spectral profiles. Future aspects of this technique are discussed herein.     

冠层水平互花米草叶片光合色素含量的高光谱遥感估算模型

以闽江河口鳝鱼滩湿地互花米草(Spartina alterniflora)的实测冠层高光谱反射率和叶片光合色素含量(LPPC)为数据源,在分析LPPC与原始光谱反射率、一阶导数光谱反射率、22种已报道光谱指数和14种新构建的植被指数相关性的基础上,利用直线回归、指数回归、对数回归以及乘幂回归方法,系统地比较了36种植被指数在估算互花米草LPPC中的表现。研究表明:(1)一阶导数光谱反射率组合的植被指数用于估算互花米草的LPPC优于原始光谱反射率;(2)红边区域一阶导数光谱是估测互花米草LPPC的最佳波段;(3)对于单一色素含量的估算,叶绿素a(Chla)的最佳估算指数为FDNDVI[723,703];叶绿素b(Chlb)的最佳估算指数为FDRVI[723,525];类胡萝卜素(Cars)的最佳估算指数为FDNDVI[723,703];(4)对于使用统一参量同时估算Chla、Chlb、Cars,由FDRVI[723,703]建立的对数估算模型效果最佳。研究成果可为湿地植物生化参量反演提供参考,也可为闽江河口湿地入侵种互花米草的动态监测和生态评估管理提供有力的科学依据。     

盖度与冠层水深对沉水植物水盾草光谱特性的影响

遥感技术可应用于大尺度实时监测沉水植物的分布与生长状况。然而沉水植物的光谱特征受其冠层在水下深度的影响,从而影响湖泊和河流中沉水植物的遥感影像解译与信息提取。应用地物光谱仪,通过野外原位测定和室外控制试验,实测了沉水植物水盾草(Cabomba caroliniana)群落冠层在水下不同深度的反射光谱,分析了冠层水深对水盾草反射光谱的影响,并建立了基于光谱反射率和冠层水深的水盾草群落盖度反演模型。研究结果表明(1)不同盖度的水盾草群落光谱反射率的基本特征主要体现在绿光和近红外波段;(2)水盾草群落的光谱反射率与冠层水深基本呈负相关,相同盖度水盾草群落的光谱反射率随冠层水深的增加而减小,在近红外波段尤其明显;(3)水盾草群落冠层水深越小,其盖度与光谱反射率的相关性越强,且水盾草群落盖度越大,其光谱反射率与冠层水深的相关性越显著;(4)水盾草光谱反射率与盖度相关的最佳波段在692—898 nm,与冠层水深相关最佳的波段在710 nm和806 nm附近;(5)在710 nm和806 nm处建立的结合冠层水深的修正模型,无论是回归方程决定系数(R2),还是水盾草群落盖度的反演精度都明显高于仅用光谱反射率反演盖度的简单模型,因此可有效减除冠层水深对反演精度的影响。本研究的结果可为遥感监测沉水植物的分布和动态变化,以及沉水植物生物物理参量反演提供科学依据。     

Optical characteristics of the phototroph Thiocapsa roseopersicina and implications for real-time monitoring of the bacteriochlorophyll concentration.

Optical characteristics of a Thiocapsa roseopersicina culture and environmental samples containing T. roseopersicina were investigated in the spectral range of 400 to 1,100 nm (absorption coefficient, diffuse attenuation coefficient, and reflectance). Specific absorption coefficients of T. roseopersicina at wavelengths of 480, 520, 550, 580, 805, 860, and 880 nm were determined. It is suggested that the optical properties of T. roseopersicina in the near-infrared range of 800 to 930 nm, confirmed in this study, may be used for development of remote sensing techniques for real-time monitoring of T. roseopersicina and other bacteriochlorophyll a-containing microbes.     

土耳其斯坦叶螨为害棉叶的生理变化及光谱特征分析

对土耳其斯坦叶螨Tetranychusturkestani(VgarovetNikolski)为害程度不同(0,1,2,3,4级)的棉叶进行光谱测试,并按螨害级数测定光谱测试后棉叶的叶绿素和类胡萝卜素含量。结果表明随着螨害的逐渐加重,棉叶的叶绿素含量逐渐下降,类胡萝卜素含量逐渐上升。光谱测试结果在可见光区,绿峰两侧波段的光谱反射率随螨害加重逐渐增大,差异明显;在近红外区,748~863nm波段的光谱反射率随螨害加重逐渐减小,差异极显著。同时,利用一阶微分求取不同螨害级数棉叶的红边并计算红边参数,通过分析发现,棉花受叶螨危害后单叶光谱的红边发生明显的蓝移现象,红边振幅、红边振幅与最小振幅的比值以及红边峰值面积的值随着螨害加重逐渐减小,结果认为红边能很好地反映棉叶受棉叶螨危害的程度。     

Optical properties of Nannochloropsis sp and their application to remote estimation of cell mass

The absorption and scattering coefficients and reflectance spectra of ultra-high density Nannochloropsis occulata cultures were investigated in detail to identify the optical properties of the cultures and devise algorithms for remote estimation of dry cell mass in ultra-high cell density cultures. High-spectral resolution measurements of apparent absorption and attenuation as well as reflectance from 400 to 900 nm were carried out in relation to the dry weight, cell count, and pigment concentration in outdoor cultures. Indices calculated as (R(NIR) - R(red))/(R(NIR) + R(red)) and R(NIR)/R(red), in which R(NIR) is reflectance in the range from 750 to 800 nm and R(red) is reflectance in the range 670-680 nm, were used for remote assessment of dry cell mass. Remote estimation in the range 1 to 8 g/L was accomplished with an error of less than 0.66 g/L. A different index, i.e., (R(NIR) - R(red)) was employed for estimation of cell-chlorophyll concentration. This is the first report of in vivo specific absorption coefficient of chlorophyll-a and specific scattering coefficient per dry algal weight of Nannochloropsis sp., providing a basis for remote monitoring of dense phytoplankton masses.     

浒苔遥感监测研究进展

浒苔大规模集聚形成的绿潮灾害是海洋生态系统主要生态环境问题之一,基于卫星遥感影像监测浒苔及其扩展动态已成为一种及时有效的手段。对国内外浒苔遥感监测方面文献进行归纳整理,认为光学遥感数据、多波段比值法是最常用的遥感数据和监测方法。对遥感监测浒苔机理进行了阐述,并对分类方法进行评价认为监督分类法解译精度不高。目前单波段阈值法和多波段比值法应用广泛,但在监测漂浮浒苔和混合象元解译存在不足。辐射传输模型法能有效提高信息解译的精度,但还处于起步阶段。遥感监测浒苔灾害的未来发展需要提高影像空间分辨率,深入研究监测方法,进行多种平台和多源遥感数据相结合,并由定性走向定量,从而建立健全遥感监测预警系统。