Theory and Simulations of Adhesion Receptor Dimerization on Membrane Surfaces

The equilibrium constants of trans and cis dimerization of membrane bound (2D) and freely moving (3D) adhesion receptors are expressed and compared using elementary statistical-thermodynamics. Both processes are mediated by the binding of extracellular subdomains whose range of motion in the 2D environment is reduced upon dimerization, defining a thin reaction shell where dimer formation and dissociation take place. We show that the ratio between the 2D and 3D equilibrium constants can be expressed as a product of individual factors describing, respectively, the spatial ranges of motions of the adhesive domains, and their rotational freedom within the reaction shell. The results predicted by the theory are compared to those obtained from a novel, to our knowledge, dynamical simulations methodology, whereby pairs of receptors perform realistic translational, internal, and rotational motions in 2D and 3D. We use cadherins as our model system. The theory and simulations explain how the strength of cis and trans interactions of adhesive receptors are affected both by their presence in the constrained intermembrane space and by the 2D environment of membrane surfaces. Our work provides fundamental insights as to the mechanism of lateral clustering of adhesion receptors after cell-cell contact and, more generally, to the formation of lateral microclusters of proteins on cell surfaces.     

Relationship between eggshell strength and keratan sulfate of eggshell membranes

Eggshell strength is an important factor in an effort to minimize eggshell breakage, which is a significant problem in the egg production industry. In the current study, we isolated and quantified the specific glycosaminoglycans (GAGs) from the calcified eggshell and shell membranes, which are related to eggshell strength. Our data suggest that GAGs exist in calcified eggshell may influence morphology of shell but do not affect on increase of shell amount while GAGs of shell membranes are maybe highly associated with shell strength with an increase of shell weight. Shell strength showed a strong correlation with the content of GAGs (r=0.942, p<0.0005) and a weak relationship with uronic acid content (r=0.564, p=0.056) in shell membranes. Monosaccharides in shell membranes were determined by Bio-LC analysis for the identification of any specific GAGs related with shell strength. It indicates that the galactose content as a component of keratan sulfate (KS) has a significant correlation with eggshell strength (r=0.985, p<0.0005). These results suggest that eggshell strength is proportional to the KS content of eggshell membranes with an increase of eggshell weight.     

Microgeographical variation in shell strength in the flat periwinkles Littorina obtusata and Littorina mariae

The strength of molluscan shells has been shown to vary in adaptive ways in a number of species and one of the main factors thought to be involved is shell-crushing by predators. A recent study found that the sibling species of flat periwinkle Littorina obtusata and Littorina mariae showed significant differences in the rates at which shell strength increased with shell length in specimens which had been collected from the same location, where the species were sympatric. This paper describes differences between the shells of the two species from a number of localities around Milford Haven in Dyfed, Wales, and local geographical variation in the shells. Littorina mariae, which is normally found at lower tidal levels than L. obtusata, matures at a smaller shell length. Both species reinforce the shell as they grow since shell strength, determined as the maximum force applied by a hydraulic tensile testing machine before the shell cracked, is strongly positively allometric; it increases at a rate close to the cube of shell length whilst isometric growth would result in strength increasing in proportion to the square of shell length. Because L. mariae matures earlier and reinforces the shell at a smaller size, the mature shell of L. mariae is substantially stronger on average than that of a similar sized but immature L. obtusata. At maturity the shell strengths of the two species are not very different despite the substantial difference in mean shell length. Strength varies significantly from shore to shore, and with the level of the shore from which the animals were collected. Strength increases down the shore in both species. Shell strength decreases with exposure to wave action in L. mariae but increases with exposure in L. obtusata; there is also substantial shore-to-shore variation which is not explained by exposure. Path analysis was used to explore the relationship between shell strength and other measured shell parameters (mass, length, height, thickness). The best predictor of shell strength in both species is a parameter which is heavily positively loaded on LN (shell mass) and strongly offset by negative loadings on LN (shell length) and LN (shell height). This is logical because for a given shell length a heavier shell will be thicker and stronger, whilst for a given shell mass a bigger shell will be thinner and therefore weaker. Such differential variation of shell mass and shell length explains most of the geographical variation observed in shell strength; shells are stronger in snails collected from one place than from another because, for the same shell length they are heavier or, to put it the other way, because at the same shell mass, they are smaller.     

Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function

Bacterial microcompartments (BMCs) sequester enzymes from the cytoplasmic environment by encapsulation inside a selectively permeable protein shell. Bioinformatic analyses indicate that many bacteria encode BMC clusters of unknown function and with diverse combinations of shell proteins. The genome of the halophilic myxobacterium Haliangium ochraceum encodes one of the most atypical sets of shell proteins in terms of composition and primary structure. We found that microcompartment shells could be purified in high yield when all seven H. ochraceum BMC shell genes were expressed from a synthetic operon in Escherichia coli. These shells differ substantially from previously isolated shell systems in that they are considerably smaller and more homogeneous, with measured diameters of 39 ± 2 nm. The size and nearly uniform geometry allowed the development of a structural model for the shells composed of 260 hexagonal units and 13 hexagons per icosahedral face. We found that new proteins could be recruited to the shells by fusion to a predicted targeting peptide sequence, setting the stage for the use of these remarkably homogeneous shells for applications such as three-dimensional scaffolding and the construction of synthetic BMCs. Our results demonstrate the value of selecting from the diversity of BMC shell building blocks found in genomic sequence data for the construction of novel compartments.     

Effects of Endolithic Parasitism on Invasive and Indigenous Mussels in a Variable Physical Environment

Biotic stress may operate in concert with physical environmental conditions to limit or facilitate invasion processes while altering competitive interactions between invaders and native species. Here, we examine how endolithic parasitism of an invasive and an indigenous mussel species acts in synergy with abiotic conditions of the habitat. Our results show that the invasive Mytilus galloprovincialis is more infested than the native Perna perna and this difference is probably due to the greater thickness of the protective outer-layer of the shell of the indigenous species. Higher abrasion due to waves on the open coast could account for dissimilarities in degree of infestation between bays and the more wave-exposed open coast. Also micro-scale variations of light affected the level of endolithic parasitism, which was more intense at non-shaded sites. The higher levels of endolithic parasitism in Mytilus mirrored greater mortality rates attributed to parasitism in this species. Condition index, attachment strength and shell strength of both species were negatively affected by the parasites suggesting an energy trade-off between the need to repair the damaged shell and the other physiological parameters. We suggest that, because it has a lower attachment strength and a thinner shell, the invasiveness of M. galloprovincialis will be limited at sun and wave exposed locations where endolithic activity, shell scouring and risk of dislodgement are high. These results underline the crucial role of physical environment in regulating biotic stress, and how these physical-biological interactions may explain site-to-site variability of competitive balances between invasive and indigenous species.     

What makes a good home for hermits? Assessing gastropod shell density and relative strength

The survival and reproductive success of hermit crabs is intrinsically linked to the quality of their domicile shells. Because damaged or eroded shells can result in greater predation, evaluating shell structure may aid our understanding of population dynamics. We assessed the structural attributes of Cerithium atratum shells through assessments of (a) density using a novel approach involving computed tomography and (b) tolerance to compressive force. Our goal was to investigate factors that may influence decision making in hermit crabs, specifically those that balance the degree of protection afforded by a shell (i.e. density and strength) with the energetic costs of carrying such resources. We compared the density and relative strength (i.e. using compression tests) of shells inhabited by live gastropods, hermit crabs (Pagurus criniticornis) and those found empty in the environment. Results failed to show any relationship between density and shell size, but there was a notable effect of shell density among treatment groups (gastropod/empty/hermit crab). There was also a predictable effect of shell size on maximum compressive force, which was consistent among occupants. Our results suggest that hermit crabs integrate multiple sources of information, selecting homes that while less dense (i.e. reducing the energy costs of carrying these resources), still offer sufficient resistance to compressive forces (e.g. such as those inflicted by shell-breaking predators). Lastly, we show that shell size generally reflects shell strength, thus explaining the motivation of hermit crabs to search for and indeed fight over the larger homes.     

Resistance to shell breaking in two intertidal snails

The ability of shells to withstand shell breaking forces has been examined in two intertidal prosobranchs, Nucella lapillus and Littorina littorea , using four methods: measuring shell strength on a compressive testing machine, measuring the shell to body mass ratio, measuring the shell thickness and measuring the ability of crabs to break shells in aquarium experiments. Nucella lapillus consistently showed a relationship between shell vulnerability and environmental variables: the shells were easier to break at sites where rock and boulder movement was the least. Although some between-site differences were found in L. littorea shells, these were less than in N. lapillus and did not relate to environment variables: the shells were easier to break at sites where exposure to wave action was the least. Although some between-site differences were found in L. littorea shells , these were less than in N. lapillus and did not relate to environmental factors. However, both species appear to grow into a size refuge in which they are secure from predation by shore crabs at the sites where these crabs are commonest.     

Shell cracking strength in almond (Prunus dulcis [Mill.] D.A. Webb.) and its implication in uses as a value-added product

Researchers are currently developing new value-added uses for almond shells, an abundant agricultural by-product. Almond varieties are distinguished by processors as being either hard or soft shelled, but these two broad classes of almond also exhibit varietal diversity in shell morphology and physical characters. By defining more precisely the physical and chemical characteristics of almond shells from different varieties, researchers will better understand which specific shell types are best suited for specific industrial processes. Eight diverse almond accessions were evaluated in two consecutive harvest seasons for nut and kernel weight, kernel percentage and shell cracking strength. Shell bulk density was evaluated in a separate year. Harvest year by almond accession interactions were highly significant (p  0.01) for each of the analyzed variables. Significant (p  0.01) correlations were noted for average nut weight with kernel weight, kernel percentage and shell cracking strength. A significant (p  0.01) negative correlation for shell cracking strength with kernel percentage was noted. In some cases shell cracking strength was independent of the kernel percentage which suggests that either variety compositional differences or shell morphology affect the shell cracking strength. The varietal characterization of almond shell materials will assist in determining the best value-added uses for this abundant agricultural by-product.     

Tuning the Dipolar Plasmon Hybridization of Multishell Metal-Dielectric Nanostructure: Gold Nanosphere in a Gold Nanoshell

Because of the interaction between dipole resonances of the inner gold sphere and the outer gold shell, gold-dielectric-gold multishells with sub-50 nm diameter may at most have three hybridization modes of surface plasmon resonance (SPR). Theoretical calculations based on quasi-static theory indicate that there are blending and splitting of SPR bands in the absorption spectra, which makes the number of absorption peak tunable by changing the radius of inserted gold sphere, thickness of gold shell, dielectric constant of middle dielectric shell or outer environment. The two absorption peaks at longer wavelength, which correspond to the hybridization from the bonding shell plasmon and the sphere plasmon, are usually intense and well tunable. The absorption peak at shorter wavelength, which corresponds to the symmetric coupling between the anti-bonding shell plasmon and the sphere plasmon, is relative weak and only occurs with large dielectric constant of the middle shell, small dielectric constant of the outer surrounding, large inner radius of the gold shell, and small radius of the inner gold sphere. Furthermore, the physical origin of these plasmon hybridizations in gold-dielectric-gold multishells nanostructure has also been illuminated by analyzing the local electric field distributions.     

Flexing the abdominals: do bigger muscles make better fighters?

Animal contests often involve the use of repeated signals, which are assumed to advertise stamina, and hence fighting ability. While an individual may be predicted to give up once it has crossed an energetic threshold, costs inflicted by its opponent may also contribute to the giving-up decision. Therefore, physical strength should be of key importance in contests, allowing high signal magnitude as well as potentially inflicting costs. We investigated this using hermit crab shell fights, which employ a 'hybrid signal' of shell rapping, which advertises stamina but also imposes potentially deleterious consequences for the receiver. We examined the links between contest outcomes and two proxies for strength; the protein content and relative mass of hermit crab abdominal muscles, the main muscle group used in shell rapping. Our results indicate that there was no difference in muscle protein between winners and losers, whereas winners had significantly greater muscle mass : body mass ratios. Thus, while stamina has been assumed by theory to be an important determinant of agonistic success, the present results demonstrate the importance of muscle size and thereby strength.     

Core‐shell nanofibers: Integrating the bioactivity of gelatin and the mechanical property of polyvinyl alcohol

Coaxial electrospinning is used to fabricate nanofibers with gelatin in the shell and polyvinyl alcohol (PVA) in the core in order to derive mechanical strength from PVA and bioactivity from gelatin. At a 1:1 PVA/gelatin mass ratio, the core‐shell nanofiber scaffolds display a Young's modulus of 168.6 ± 36.5 MPa and a tensile strength of 5.42 ± 1.95 MPa, which are significantly higher than those of the scaffolds composed solely of gelatin or PVA. The Young's modulus and tensile strength of the core‐shell nanofibers are further improved by reducing the PVA/gelatin mass ratio from 1:1 to 1:3. The mechanical analysis of the core‐shell nanofibers suggests that the presence of the gelatin shell may improve the molecular alignment of the PVA core, transforming the semi‐crystalline, plastic PVA into a more crystallized, elastic PVA, and enhancing the mechanical properties of the core. Lastly, the PVA/gelatin core‐shell nanofibers possess cellular viability, proliferation, and adhesion similar to these of the gelatin nanofibers, and show significantly higher proliferation and adhesion than the PVA nanofibers. Taken together, the coaxial electrospinning of nanofibers with a core‐shell structure permits integration of the bioactivity of gelatin and the mechanical strength of PVA in single fibers. © 2013 Wiley Periodicals, Inc. Biopolymers 101: 336–346, 2014.     

Ocean Warming,More than Acidification,Reduces Shell Strength in a Commercial Shellfish Species during Food Limitation

Ocean surface pH levels are predicted to fall by 0.3–0.4 pH units by the end of the century and are likely to coincide with an increase in sea surface temperature of 2–4°C. The combined effect of ocean acidification and warming on the functional properties of bivalve shells is largely unknown and of growing concern as the shell provides protection from mechanical and environmental challenges. We examined the effects of near-future pH (ambient pH –0.4 pH units) and warming (ambient temperature +4°C) on the shells of the commercially important bivalve, Mytilus edulis when fed for a limited period (4–6 h day⁻¹). After six months exposure, warming, but not acidification, significantly reduced shell strength determined as reductions in the maximum load endured by the shells. However, acidification resulted in a reduction in shell flex before failure. Reductions in shell strength with warming could not be explained by alterations in morphology, or shell composition but were accompanied by reductions in shell surface area, and by a fall in whole-body condition index. It appears that warming has an indirect effect on shell strength by re-allocating energy from shell formation to support temperature-related increases in maintenance costs, especially as food supply was limited and the mussels were probably relying on internal energy reserves. The maintenance of shell strength despite seawater acidification suggests that biomineralisation processes are unaffected by the associated changes in CaCO₃ saturation levels. We conclude that under near-future climate change conditions, ocean warming will pose a greater risk to shell integrity in M. edulis than ocean acidification when food availability is limited.     

Characterization of shell gland lipids from chickens (Gallus domesticus) producing strong or weak egg shells

1. The reduction in egg shell strength in hens at the end of the first reproductive cycle was not associated with abnormal uterine or body fat accumulation. 2. The phosphatidylcholine concentration was greater in the shell glands of hens producing strong egg shells compared to that of producing weak egg shells. 3. Differences were not detected in the total lipid or cholesterol concentrations or the fatty acid profiles of phosphatidylcholine or phosphatidylethanolamine fractions. 4. Following an induced molt, the fatty acid profile of the total lipid fraction of the shell gland was altered with a decrease in stearic acid and an increase in oleic acid. 5. The results demonstrate that alterations in egg shell strength are mainly associated with changes in shell gland phospholipid polar head group composition and not with changes in phospholipid fatty acid profile or cholesterol concentration.     

Cuttlebone morphology limits habitat depth in eleven species of Sepia (Cephalopoda: Sepiidae)

The cuttlebone is a rigid buoyancy tank that imposes a depth limit on Sepia, the only living speciose cephalopod genus with a chambered shell. Sections of 59 cuttlebones from a geographically diverse sample of 11 species were examined using confocal microscopy. Sepia species that live at greater depths had thicker septa and less space between pillars than did shallow species. A plate theory analysis of cuttlebone strength based on these two measures predicted maximum capture depths accurately in most species. Thus cuttlebone morphology confers differing degrees of strength against implosion from hydrostatic pressure, which increases with increasing habitat depth. Greater strength may come at the cost of increased cuttlebone density, which impinges on the cuttlebone's buoyancy function.     

The factors that favor adaptive habitat construction versus non‐adaptive environmental conditioning

Adaptive habitat construction is a process by which individuals alter their environment so as to increase their (inclusive) fitness. Such alterations are a subset of the myriad ways that individuals condition their environment. We present an individual‐based model of habitat construction to explore what factors might favor selection when the benefits of environmental alterations are shared by individuals of the same species. Our results confirm the predictions of inclusive fitness and group selection theory and expectations based on previous models that construction will be more favored when its benefits are more likely to be directed to self or near kin. We found that temporal variation had no effect on the evolution of construction. For spatial heterogeneity, construction was disfavored when the spatial pattern of movement did not match the spatial pattern of environmental heterogeneity, especially when there was spatial heterogeneity in the optimal amount of construction. Under those conditions, very strong selection was necessary to favor genetic differentiation of construction propensity among demes. We put forth a constitutive theory for the evolution of adaptive habitat construction that unifies our model with previous verbal and quantitative models into a formal conceptual framework.     

SAFETY FACTORS OF TROPICAL VERSUS TEMPERATE LIMPET SHELLS: MULTIPLE SELECTION PRESSURES ON A SINGLE STRUCTURE

A comparison of the safety factors of tropical and temperate limpet shells in the eastern Pacific yielded two results of significance. A safety factor was defined as shell strength/maximum tenacity, where maximum tenacity (force required to detach foot) determines the maximum prying force that a crab or bird predator can exert on the shell. 1) On average, shell strength and foot tenacity for the tropical limpets were twice those for the temperate limpets. In contrast, the average safety factors for the two groups were approximately equal. This comparatively narrow range of safety factors was due to a highly significant association of greater shell strengths with greater foot tenacities. The implication of this result is that selection has acted to closely link the mechanical performances of these two rather independent structures, the shell and the foot. 2) The presence of an additional class of predators which feed on the tropical limpets was reflected in the safety factors of their shells. Whereas the shells of both tropical and temperate limpets are exposed to predator-induced prying forces, the shells of the tropical group are also exposed to lateral crushing forces generated by fish predators. This additional selection pressure was associated with several deviations from a regression of safety factor versus variability in shell strength which had been calculated previously for the temperate limpets. As predicted, the magnitudes of these deviations were correlated with the degree of exposure to this additional selection pressure. Hence, the presence of more than one selection pressure appears to have influenced the precision with which the shells of these species have become adapted to a single selection pressure. The use of safety factor analysis provides a very useful methodology for identifying additional selection pressures or adaptive constraints on biological structures.     

Egg shell quality in Japanese quail: characteristics,heritabilities and genetic and phenotypic relationships

The objective of the present study was to estimate heritabilities as well as genetic and phenotypic correlations for egg weight, specific gravity, shape index, shell ratio, egg shell strength, egg length, egg width and shell weight in Japanese quail eggs. External egg quality traits were measured on 5864 eggs of 934 female quails from a dam line selected for two generations. Within the Bayesian framework, using Gibbs Sampling algorithm, a multivariate animal model was applied to estimate heritabilities and genetic correlations for external egg quality traits. The heritability estimates for external egg quality traits were moderate to high and ranged from 0.29 to 0.81. The heritability estimates for egg and shell weight of 0.81 and 0.76 were fairly high. The genetic and phenotypic correlations between egg shell strength with specific gravity, shell ratio and shell weight ranging from 0.55 to 0.79 were relatively high. It can be concluded that it is possible to determine egg shell quality using the egg specific gravity values utilizing its high heritability and fairly high positive correlation with most of the egg shell quality traits. As a result, egg specific gravity may be the choice of selection criterion rather than other external egg traits for genetic improvement of egg shell quality in Japanese quails.     

Characterization of lamina-bound chromatin in the nuclear shell isolated from HeLa cells

The structure and the polypeptide composition of the nuclear shell isolated from interphase HeLa cells have been investigated and compared to those of the intranuclear material. The isolated nuclear shell contains chromatin superstructures (28-32 nm thick fibres) made of tightly packed nucleosomes that resist low ionic strength conditions and that are associated with the three nuclear lamins. Chromatin in the nuclear shell exhibits very simple chemical composition. Especially, non-histone proteins are lacking. The results presented here rule out the possibility that the nuclear shell results from contamination of lamina by intranuclear elements. They suggest that the lamins are directly involved in the specific properties and in the organization of chromatin in the nuclear shell.     

Niche construction in the light of niche theory

Ecological niche construction, the process whereby an organism improves its environment to enhance its growth and persistence, is an important missing element of niche theory. Niche theory has mainly focused on niche-deteriorating processes, such as resource consumption, predation and competition, which have negative effects on population growth. Here, we integrate niche construction explicitly into modern niche theory. We use a graphical approach to analyse how a species' niche-improving impacts interplay with niche-deteriorating impacts to modify its response to the environment. In a model of two consumers that compete for one limiting resource and one predator, we show how niche construction modifies the traditional niche-deteriorating impacts of its agent or of competing species, and hence the potential for species coexistence. By altering the balance between intraspecific and interspecific competitive effects, niche construction can either generate net interspecific facilitation or strengthen interspecific competition. The adaptive benefit derived from niche construction also strongly affects the realized niche of a niche-constructing species.     

The snapping strength of the egg shells of various orders of birds

A study of the snapping strength (S) of egg shells and its relationship to the square of the thickness (T²) has been made on seven orders of birds and also in respect of a few shells of ratite birds, domestic fowl and guinea fowl.
There are considerable differences in strength between the egg shells of different orders of birds and when shells are snapped outwards the egg shells of Sphenisciformes are almost twice as strong as those of Podicipitiformes for a given thickness. The shells of the guinea fowl are very strong and those of the domestic fowl weak compared with the seven orders when they are snapped inwards.
Comparisons of the strength of shells with and without the outside chalky cover, which occurs on the egg shells of Sphenisciformes, Pelecaniformes and Podicipitiformes, show very variable relationships, while comparisons of inward and outward snapping strength indicate that in some orders the difference is great but that in others it is negligible.
The presence or absence of a cover on the shell could not explain any difference in snapping strength, nevertheless, a few tests on Pelecanus shells using impact strength showed that then the cover adds considerably to the strength. No other shell characteristics could explain the differences in snapping strength.