A new species of <Emphasis Type="Italic">Rhodospatha</Emphasis> (Araceae), with a key to species from the Atlantic Rainforest,Brazil

A new species of Araceae, Rhodospatha arborescens, was found in two preservation areas in Minas Gerais state, Brazil, Caratinga Biological Station and Rio Doce State Park, both located in a semideciduous seasonal forest (Interior Atlantic Rainforest). The new species is helophytic and arborescent. It is described, illustrated, and compared with Rhodospatha species that occur in the Atlantic Rainforest, using a dichotomous key. Information is also presented on the geographic distribution, ecology, and phenology these species.     

Disturbances, elevation, topography and spatial proximity drive vegetation patterns along an altitudinal gradient of a top biodiversity hotspot

The correlation between vegetation patterns (species distribution and richness) and altitudinal variation has been widely reported for tropical forests, thereby providing theoretical basis for biodiversity conservation. However, this relationship may have been oversimplified, as many other factors may influence vegetation patterns, such as disturbances, topography and geographic distance. Considering these other factors, our primary question was: is there a vegetation pattern associated with substantial altitudinal variation (10–1,093 m a.s.l.) in the Atlantic Rainforest—a top hotspot for biodiversity conservation—and, if so, what are the main factors driving this pattern? We addressed this question by sampling 11 1-ha plots, applying multivariate methods, correlations and variance partitioning. The Restinga (forest on sandbanks along the coastal plains of Brazil) and a lowland area that was selectively logged 40 years ago were floristically isolated from the other plots. The maximum species richness (>200 spp. per hectare) occurred at approximately 350 m a.s.l. (submontane forest). Gaps, multiple stemmed trees, average elevation and the standard deviation of the slope significantly affected the vegetation pattern. Spatial proximity also influenced the vegetation pattern as a structuring environmental variable or via dispersal constraints. Our results clarify, for the first time, the key variables that drive species distribution and richness across a large altitudinal range within the Atlantic Rainforest.     

Delineating geographic boundaries of the woolly mouse opossums, Micoureusdemerarae and Micoureus paraguayanus (Didelphimorphia: Didelphidae)

This paper reports on molecular classification of the woolly mouse opossum, Micoureus spp., in the southeastern Atlantic Forest in Brazil, a hotspot of critically threatened biodiversity. Phylogenetic analysis and character-based diagnosis were done using DNA sequences from the mitochondrial cytochrome b gene and cytochrome c oxidase subunit I genes, and exon 6 of the nuclear dentine matrix protein 1 gene (DMP1). Although the nuclear DMP1 gene showed insufficient genetic variation for species diagnosis, the mtDNA analyses resulted in the robust grouping of samples of the M. paraguayanus/M. demerarae complex into three clades with distinct DNA sequence diagnostics for the species units in this study. The results support the species status of M. paraguayanus (Tate in Am Mus Novit 493: 1–13, 1931), which has a geographic distribution in the Atlantic Forest from the North and Northeast of Minas Gerais state in Brazil, going south along the coastal region of Brazil, to Paraguay and Argentina. Evidence of the boundary for this species and the provided diagnostics should facilitate and improve accuracy of studies that have been done in critical threatened fragments of the Atlantic Forest, especially in Minas Gerais and Bahia states, Brazil.     

Amphibian richness patterns in Atlantic Forest areas invaded by American bullfrogs

The relationship between invasion success and native biodiversity is central to biological invasion research. New theoretical and analytical approaches have revealed that spatial scale, land‐use factors and community assemblages are important predictors of the relationship between community diversity and invasibility and the negative effects of invasive species on community diversity. In this study we assess if the abundance of Lithobates catesbeianus, the American bullfrog, negatively affects the richness of native amphibian species in Atlantic Forest waterbodies in Brazil. Although this species has been invading Atlantic Forest areas since the 1930s, studies that estimate the invasion effects upon native species diversity are lacking. We developed a model to understand the impact of environmental, spatial and species composition gradients on the relationships between bullfrogs and native species richness. We found a weak positive relationship between bullfrog abundance and species richness in invaded areas. The path model revealed that this is an indirect relationship mediated by community composition gradients. Our results indicate that bullfrogs are more abundant in certain amphibian communities, which can be species‐rich. Local factors describing habitat heterogeneity were the main predictors of amphibian species richness and composition and bullfrog abundance. Our results reinforce the important role of habitats in determining both native species diversity and potential invasibility.     

Invasion of the acoustic niche: variable responses by native species to invasive American bullfrog calls

Biological invasions are a major threat to biodiversity. Invasive species that use acoustic communication can affect native species through interference in the acoustic niche. The American Bullfrog Lithobates catesbeianus is a highly invasive anuran that is widely distributed in the Brazilian Atlantic Rainforest. Adult male bullfrogs emit loud advertisement calls at frequencies that overlap with the calls of several native species of frogs. Given that spectral overlap is a major factor in acoustic masking, the purpose of this study was to test the effects of the acoustic invasion of L. catesbeianus on native frogs that have calls with and without spectral overlap with the invader. In field experiments, we exposed calling males of two overlapping species and two non-overlapping species to recorded bullfrog vocalizations, white noise, and the vocalization of another native frog species. To identify effects, we compared calls recorded before, during, and after exposure. Our results showed that native species altered their calls in response to the bullfrog calls. However, we also observed similar responses to white noise and heterospecific native calls. Both the invasive and heterospecific calls were emitted at low frequencies, which suggests that the observed responses might be specific to low-frequency calls. Our results provide evidence that the introduction of new sounds can cause native species to modify their calls, and that responses to exogenous sounds are species- and stimulus-specific.     

Length-Weight Relationships for freshwater fishes from streams of the Atlantic Rainforest,State of Paraná, Brazil

This study reports the Length-Weight Relationships (LWR) for 10 freshwater fish species sampled in the Atlantic Rainforest, Southern Brazil. Sampling was conducted between 2016 and 2017, in nine streams, using electrofishing. Collected fishes were fixed in formalin, and thus some shrinking was unavoidable. The values of parameter b of the LWR (W = aL^b) ranged between 2.5 and 3.5. We report for the first time the LWR for seven species: Geophagus iporanguensis, Isbrueckerichthys duseni, Hypostomus interruptus, Kronichthys lacerta, Chasmocranu lopezi, Astyanax lacustris e Neoplecostomus ribeirensis. We highlight the importance of the LWR data in supporting further studies on fish stocks and environment in the Atlantic Rainforest, thereby contributing to the database needed to develop fisheries management and maintenance of ecosystem services.     

Ecological parameters of the leaf‐litter frog community of an Atlantic Rainforest area at Ilha Grande,Rio de Janeiro state,Brazil

Abstract The Atlantic Rainforest originally covered much of the Brazilian coast and is now reduced to approximately only 7% of its original area. Data on abundance distribution and microhabitat characteristics of anuran amphibians living on the forest floor leaf litter in the Atlantic Rainforest are scarce. In this study, we analysed the effect of litter depth and structure on the abundance and species richness of leaf‐litter frogs in an area of Atlantic Rainforest at Ilha Grande, Rio de Janeiro State, south‐eastern Brazil. We performed monthly samples (nocturnal and diurnal) from August 1996 to October 1997 using small (2 m × 1 m) plots. We sampled 234 plots, totalling 468 m² of forest leaf litter. We estimated leaf‐litter depth and the proportion of leaves in the plot and tested their effect on the total abundance of frogs and species richness using multiple regression analysis. We found 185 frogs from eight species: Brachycephalus (=Psyllophryne) didactylus (Izecksohn, 1971) (Brachycephalidae), Dendrophryniscus brevipollicatus Jiménez de la Espada 1871 (Bufonidae), Adenomera marmorata Steindachner 1867, Eleutherodactylus parvus (Girard 1853), Eleutherodactylus guentheri (Steindachner 1864), Eleutherodactylus binotatus (Spix 1824) and Zachaenus parvulus (Girard 1853) (Leptodactylidae), and Chiasmocleis sp. (Microhylidae). Brachycephalus didactylus was the most abundant species, with 91 individuals, whereas Dendrophryniscus brevipollicatus was the rarest, with two individuals. Mean litter depth and the proportion of leaves in the leaf litter were significantly related to frog abundance (R² = 0.17; F_2,107 = 10.779; P = 0.0001) and species richness (R² = 0.11; F_2,107 = 6.375; P = 0.002) indicating that microhabitat characteristics may affect local distribution and abundance of frogs in the forest floor.     

Novel,panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

Global amphibian declines are linked with the presence of specific, highly virulent genotypes of the emerging fungal disease chytridiomycosis caused by Batrachochytrium dendrobatidis (Bd) known as the global panzootic lineage (Bd‐GPL). The global trade in amphibians for human consumption is suspected to have facilitated emergence of the disease, but evidence to support this is largely lacking. Here, we investigated the role the Lithobates catesbeianus (North American bullfrog) trade in spreading Bd genotypes by comparing strains associated with L. catesbeianus to a global panel using 36 sequenced loci from multiple chromosomal regions. Most bullfrogs were infected with Bd‐GPL genotypes, but we also detected novel, highly divergent Bd genotypes (Bd‐Brazil) from a live bullfrog in a US market and from native Brazilian anurans in the Atlantic Forest where bullfrogs are widely farmed. Sexual reproduction was also detected for the first time in Bd in the form of a hybrid genotype between the Bd‐GPL and Bd‐Brazil lineages in the Atlantic Forest. Despite the demonstration that ribosomal RNA types in Bd fail to undergo concerted evolution (over 20 sequence types may be found in a single strain), the Bd‐GPL and Bd‐Brazil lineages form largely separate clusters of related internal transcribed spacer (ITS) RNA sequences. Using ITS sequences, we then demonstrate the presence of Bd‐Brazil in Japan, primarily on invasive L. catesbeianus. The finding that Bd is capable of sexual reproduction between panzootic and endemic genotypes emphasizes the risk of international wildlife trade as a source of additional Bd epizootics owing to hybridization.     

Comparative phylogeography and demographic history of two marsupials of the Atlantic Forest in eastern Brazil

The Atlantic Forest biodiversity hotspot in eastern South America has been the focus of several phylogeographic studies concerning relationships between populations and areas and how taxa respond to environmental changes. We infer and compare the demographic and biogeographic histories of two didelphid marsupial species, Gracilinanus microtarsus and Marmosops incanus, from the Atlantic Forest of eastern Brazil to determine how these species responded to environmental changes over time, using mitochondrial and nuclear DNA sequences. We found great intraspecific genetic divergence in both species and a strong geographic structure related to similar and spatially cohesive groups within each species. These groups are consistent with the same topographical barriers, such as mountains and river valleys. Intraspecific clades are very old, dating back to a period of tectonic activities in the Neogene (5.39–8.57 Mya). Changes in the environment over the last 7 million years lead to fairly concordant demographic changes in both marsupial species, including population expansion during the last glacial maximum (ca. 21,000 years ago) or last interglacial (ca. 120,000 years ago) or both. These results do not fit the Pleistocene refuge hypothesis as an explanation of the historical biogeography and diversification of both species in the Atlantic Forest, but are compatible with the Atlantis Forest hypothesis.     

Consequences of dispersal limitation and habitat fragmentation for the Brazilian heart‐tongued frogs (Phyllodytes spp.)

Poorly known species may be cryptically endangered, especially when they inhabit fragmented and threatened habitats. Heart‐tongued frogs (genus Phyllodytes, family Hylidae, Lophyohylinae) comprise 17 species of poorly known frogs that have obligatory associations with tank bromeliads. The distributions of all species are restricted to a small, extremely fragmented, region of Atlantic Forest in eastern Brazil. We model climate and tank bromeliad distributions to better understand frog distribution limits. Using records from several sources for frogs and bromeliads with climate data from WorldClim, we modelled the distribution of Phyllodytes using maximum entropy. We compared climate and altitude within the distribution and nearby to test how climate may limit distribution. Climate together with bromeliad distributions provided the best model and predicted the smallest suitable area for Phyllodytes that was larger than that occupied, from the state of Paraíba in the north to Rio Grande do Sul in the south. Phyllodytes occurs in lower elevations that are warmer, wetter and less variable than the surrounding regions where it does not occur, and dispersal is apparently limited by the surrounding, inhospitable, region. Dispersal limitation and habitat fragmentation have relegated Phyllodytes to many very small habitat fragments. With many species in this genus being known from a single or few samples, this unfortunate combination of limitation and fragmentation suggests that some or all species of Phyllodytes may be threatened with extinction, especially if habitat fragmentation continues at its present pace in eastern Brazil.     

Effects of past climate on Passiflora actinia (Passifloraceae) populations and insights into future species management in the Brazilian Atlantic forest

The Brazilian Atlantic Rainforest is one of the most diverse and threatened ecoregions on the planet and displays high levels of endemism. Despite several population analyses and phylogeographical studies, the origins of its species richness and the evolutionary processes that gave rise to this diversification remain poorly understood, especially at the southern edge of the Atlantic Forest. Passiflora actinia is an indigenous species from the southern Atlantic Forest and, as such, was influenced by climatic changes during the Pleistocene. In this study, we investigated the effects of past climate changes on the genetic diversity of P. actinia, using nuclear and plastid markers. We subsequently suggest strategies for the preservation of this species in particular and the whole ecoregion in general. We employed phylogeographical methods and combined these results with past, present and future ensemble niche models. Genetic variability in P. actinia was similar to that of other species with similar geographical distributions, and geographical structuring was not observed based on either type of genetic marker. Diversification in P. actinia was dated to the Pleistocene, suggesting that climate changes could have influenced the distribution of genetic diversity in this species. Our results predicted that suitable P. actinia habitat will persist in the highlands but will be reduced in the lowlands, especially with higher greenhouse gas concentrations. Conservation efforts should focus on populations with unique genetic units and populations from areas with greater climatic instability. Habitat loss due to deforestation in the Atlantic Forest constitutes a major risk to this species, especially to small populations or those with low diversity indices.     

Diversity and distribution of aquatic insects in Southern Brazil wetlands: implications for biodiversity conservation in a Neotropical region

The selection of priority areas is an enormous challenge for biodiversity conservation. Some biogeographic methods have been used to identify the priority areas to conservation, and panbiogeography is one of them. This study aimed at the utilization of panbiogeographic tools, to identify the distribution patterns of aquatic insect genera, in wetland systems of an extensive area in the Neotropical region (approximately 280 000km2), and to compare the distribution of the biogeographic units identified by the aquatic insects, with the conservation units of Southern Brazil. We analyzed the distribution pattern of 82 genera distributed in four orders of aquatic insects (Diptera, Odonata, Ephemeroptera and Trichoptera) in Southern Brazil wetlands. Therefore, 32 biogeographic nodes corresponded to the priority areas for conservation of the aquatic insect diversity. Among this total, 13 were located in the Atlantic Rainforest, 16 in the Pampa and three amongst both biomes. The distribution of nodes showed that only 15% of the dispersion centers of insects were inserted in conservation units. The four priority areas pointed by node cluster criterion must be considered in further inclusions of areas for biodiversity conservation in Southern Brazil wetlands, since such areas present species from different ancestral biota. The inclusion of such areas into the conservation units would be a strong way to conserve the aquatic biodiversity in this region.     

Phylogeography and population genetics of the cryptic bonnethead shark Sphyrna aff. tiburo in Brazil and the Caribbean inferred from mtDNA markers

Resolving the identity, phylogeny and distribution of cryptic species within species complexes is an essential precursor to management. The bonnethead shark, Sphyrna tiburo, is a small coastal shark distributed in the Western Atlantic from North Carolina (U.S.A.) to southern Brazil. Genetic analyses based on mitochondrial markers revealed that bonnethead sharks comprise a species complex with at least two lineages in the Northwestern Atlantic and the Caribbean (S. tiburo and Sphyrna aff. tiburo, respectively). The phylogeographic and phylogenetic analysis of two mitochondrial markers [control region (mtCR) and cytochrome oxidase I (COI)] showed that bonnethead sharks from southeastern Brazil correspond to S. aff. tiburo, extending the distribution of this cryptic species >5000 km. Bonnethead shark populations are only managed in the U.S.A. and in the 2000s were considered to be regionally extinct or collapsed in southeast Brazil. The results indicate that there is significant genetic differentiation between S. aff. tiburo from Brazil and other populations from the Caribbean (Φ_ST = 0.9053, P < 0.000), which means that collapsed populations in the former are unlikely to be replenished from Caribbean immigration. The species identity of bonnethead sharks in the Southwest Atlantic and their relationship to North Atlantic and Caribbean populations still remains unresolved. Taxonomic revision and further sampling are required to reevaluate the status of the bonnethead shark complex through its distribution range.     

Goeppertia mendesiana sp. nov. (Marantaceae) from Bahia,Brazil, with a key to the species of Goeppertia with ornamented leaves in the Atlantic Forest of Brazil

Goeppertia mendesiana, a new species from the Atlantic Forest of Bahia, Brazil, is described and illustrated. It resembles G. widgrenii (Körn.) Borchs. & Suárez, but differs from that species by its villose petioles and peduncles (vs glabrous in G. widgrenii) and by the absence of bracteoles and interphylls, a rare feature in the genus. The ecology, distribution and conservation status of the new species is presented, along with a key to the species of Goeppertia with ornamented leaves in the Atlantic Forest of Brazil.     

Roadkills of vertebrate species on two highways through the Atlantic Forest Biosphere Reserve,southern Brazil

We assessed the magnitude, composition, and spatial and temporal patterns of road mortality of native vertebrates on two highways in southern Brazil from 18 January 2003 to 26 January 2004. The highways cross remnants of the Atlantic Rainforest, a global biodiversity hotspot, and differ in vehicle traffic and surrounding landscape. We compared the road-kill magnitude and composition of birds, mammals, and reptiles between roads and seasons. We used a modified K statistic to depict the spatial patterns of roadkills of these groups and tested the association between vehicle traffic and road mortality through linear regression. We recorded 869 kills of 92 species. The two roads differed regarding the abundance and composition of roadkills. Reptile road mortality was higher in summer than winter, but all other groups did not show significant difference in the magnitude of mortality between seasons. The composition of killed assemblages differed significantly for some of the taxonomic groups among seasons. We found only one positive association between roadkills and vehicle traffic (reptiles on one of the roads), suggesting that vehicle flow does not explain the road-kill temporal variation on these roads. Total vertebrate, bird, and mammal roadkills showed significant spatial aggregations possibly due to variation in vehicle traffic, highway design, and local landscape condition and arrangement. With expected expansion of the road network, mitigation measures for multi-species assemblages should include habitat protection, soil use regulation, road crossing structures, speed reducers, and campaigns to raise people’s awareness about road impacts on wildlife.     

Record of Ophiocordyceps unilateralis sensu lato,the zombie-ant fungus,parasitizing Camponotus in an urban fragment of Atlantic Rainforest in southeastern Brazil

Ophiocordyceps is a fungal pathogen of ants of the tribe Camponotini. It is called zombie fungus, since it changes the host behavior, causing them to die in an exposed position, typically clinging onto and biting into the adaxial surface of shrub leaves. This study aimed to describe the occurrence of parasitic associations between Ophiocordyceps and ants of the genus Camponotus in an urban fragment of Atlantic Rainforest in southeastern Brazil and to measure the rate of hyperparasitism in Ophiocordyceps by other fungi in the same location. We found 57 individuals of four species of ants and three species of fungus. The age categories of fungi were equally distributed, and rate of hyperparasitism was 17.5% (n = 10). The sampled area was recognized as an important site of Ophiocordyceps occurrence.     

Coupled population dynamics of two Neotropical marsupials driven by mesopredator's abundance

According to the mesopredator release theory, when top predators are eradicated from an area, mesopredators become overabundant. Didelphis aurita is the largest marsupial in the Atlantic Rainforest, and it occurs in higher abundances in the absence of top predators. This mesopredator has similar ecological requirements to the sympatric marsupial Metachirus nudicaudatus. Considering the similar requirements, and that D. aurita is about three times the size of M. nudicaudatus, our hypothesis is that the increase in D. aurita's abundance may negatively affect M. nudicaudatus' population. To test this hypothesis, we conducted a two-year capture-mark-recapture study in an area in the Southeast of Brazil where top predator community is depauperated. The relationship between the population dynamics of these two marsupials was analyzed by including abundance of D. aurita and environmental conditions as explanatory variables of the population parameters of M. nudicaudatus. We observed that all demographic parameters of M. nudicaudatus fluctuated over time and responded negatively to D. aurita abundance. Our conclusion is that, at least on a monthly timescale, the interspecific relationship with D. aurita seems to influence more M. nudicaudatus' population than any other environmental covariate. These findings suggest that mesopredator release can promote negative effects on population parameters of other species within the same trophic level. Considering that top predators are no longer present in most of the remaining Atlantic Rainforest fragments, the marsupial D. aurita has become a key species in this biome, with relevant consequences arising from its interspecific interactions.     

A short-range endemic species from south-eastern Atlantic Rain Forest shows deep signature of historical events: phylogeography of harvestmen Acutisoma longipes (Arachnida: Opiliones)

The Brazilian Atlantic Rain Forest is amongst the most diverse biomes in the world, but the processes that shaped its biodiversity are still poorly understood. We used one mitochondrial and two nuclear markers to evaluate the phylogeographic patterns of the endemic harvestman Acutisoma longipes and its closely related species to investigate the biogeographic history of this biome. The results showed low intrapopulation diversity and strong population structure, suggesting poor dispersion amongst locations. Phylogenetic analyses pointed to three main mitochondrial lineages congruent with the geomorphology of the south-eastern region of Brazil (Serra do Mar, Serra da Mantiqueira, and interior plateau). These older divergences occurred in the middle-Neogene, suggesting that events in this period drove the diversification of the species, but Quaternary events also affected the populations locally. We detected some congruence between A. longipes demographic patterns and the areas of endemism delimited for harvestmen, suggesting that some regions of the distribution could have been more stable in the past (especially in Serra da Mantiqueira). Our findings corroborate that harvestmen are a suitable group for the study of ancient biogeographic events in the Atlantic Rain Forest, even at small-scale ranges. Acutisoma hamatum is here considered as a new junior synonym of A. longipes.     

ITS and trnH-psbA as Efficient DNA Barcodes to Identify Threatened Commercial Woody Angiosperms from Southern Brazilian Atlantic Rainforests

The Araucaria Forests in southern Brazil are part of the Atlantic Rainforest, a key hotspot for global biodiversity. This habitat has experienced extensive losses of vegetation cover due to commercial logging and the intense use of wood resources for construction and furniture manufacturing. The absence of precise taxonomic tools for identifying Araucaria Forest tree species motivated us to test the ability of DNA barcoding to distinguish species exploited for wood resources and its suitability for use as an alternative testing technique for the inspection of illegal timber shipments. We tested three cpDNA regions (matK, trnH-psbA, and rbcL) and nrITS according to criteria determined by The Consortium for the Barcode of Life (CBOL). The efficiency of each marker and selected marker combinations were evaluated for 30 commercially valuable woody species in multiple populations, with a special focus on Lauraceae species. Inter- and intraspecific distances, species discrimination rates, and ability to recover species-specific clusters were evaluated. Among the regions and different combinations, ITS was the most efficient for identifying species based on the ‘best close match’ test; similarly, the trnH-psbA + ITS combination also demonstrated satisfactory results. When combining trnH-psbA + ITS, Maximum Likelihood analysis demonstrated a more resolved topology for internal branches, with 91% of species-specific clusters. DNA barcoding was found to be a practical and rapid method for identifying major threatened woody angiosperms from Araucaria Forests such as Lauraceae species, presenting a high confidence for recognizing members of Ocotea. These molecular tools can assist in screening those botanical families that are most targeted by the timber industry in southern Brazil and detecting certain species protected by Brazilian legislation and could be a useful tool for monitoring wood exploitation.