Chironomid pupal exuviae and larvae of two storage reservoirs in The Netherlands

For three years chironomid larvae were collected bimonthly with a grab sampler in two deep storage reservoirs in The Netherlands. Chironomid pupal exuviae were collected monthly, from April to November, with a handnet. Net samples yielded more taxa than grab samples. The taxa found in net samples originated from more habitats, than taxa found in grab samples. The relative contribution of Orthocladiinae was much larger in net samples. Based on the results obtained in the two reservoirs, some advantages and disadvantages of both sampling methods are discussed.     

The chironomid larvae of a small chalk stream in Berkshire, England

Abstract. 1. The longitudinal distributions of larval Chironomidae (Diptera) were examined for 1 year in the intermittent and perennial sections of the Winterbourne, a small chalk stream in Berkshire, England.
2. Forty-nine chironomid taxa were recorded at ten major sites which were sampled on six occasions and four additional taxa were recorded at sites sampled only once.
3. Cluster analyses using data from the major sampling sites identified three groups of sites. A pond in the stream channel which had a distinct chironomid fauna was distinguished from all other sites before the remaining intermittent sites were separated from all perennial sites on the basis of the chironomid fauna.
4. In the perennial stream, a site heavily shaded by trees had low species richness compared with partially and unshaded sites further downstream. The lowest site, which was near to the confluence with a larger chalk stream, the River Lambourn, had the highest number of taxa (thirty-five), including several which were frequent in the Lambourn.
5. By recording the occurrence of prepupae, an indication of emergence periods was obtained and many taxa were shown to have extended periods of emergence.     

Trace DNA from insect skins: a comparison of five extraction protocols and direct PCR on chironomid pupal exuviae

Insect skins (exuviae) are of extracellular origin and shed during moulting. The skins do not contain cells or DNA themselves, but epithelial cells and other cell‐based structures might accidentally attach as they are shed. This source of trace DNA can be sufficient for PCR amplification and sequencing of target genes and aid in species identification through DNA barcoding or association of unknown life stages. Species identification is essential for biomonitoring programs, as species vary in sensitivities to environmental factors. However, it requires a DNA isolation protocol that optimizes the output of target DNA. Here, we compare the relative effectiveness of five different DNA extraction protocols and direct PCR in isolation of DNA from chironomid pupal exuviae. Chironomidae (Diptera) is a species‐rich group of aquatic macroinvertebrates widely distributed in freshwater environments and considered a valuable bioindicator of water quality. Genomic DNA was extracted from 61.2% of 570 sampled pupal exuviae. There were significant differences in the methods with regard to cost, handling time, DNA quantity, PCR success, sequence success and the ability to sequence target taxa. The NucleoSpin^® Tissue XS Kit, DNeasy^® Blood and Tissue kit, and QuickExtract^? DNA Extraction Solution provided the best results in isolating DNA from single pupal exuviae. Direct PCR and DTAB/CTAB methods gave poor results. While the observed differences in DNA isolation methods on trace DNA will be relevant to research that focuses on aquatic macroinvertebrate ecology, taxonomy and systematics, they should also be of interest for studies using environmental barcoding and metabarcoding of aquatic environments.     

Symbiotic bacteria as a determinant of plant community structure and plant productivity in dune grassland

Symbiotic interactions are thought to play a key role in ecosystems. Empirical evidence for the impact of symbiotic bacteria on plant communities is, however, extremely scarce because of experimental constraints. Here, in three complementary experiments, we show that nitrogen-fixing rhizobia bacteria act as a determinant of plant community structure and diversity. Grassland microcosms inoculated with a mixture of rhizobia had a higher above-ground plant productivity (+35%), contained more nitrogen (+85%) and had significant higher community evenness (+34%) than control microcosms without rhizobia. Moreover, three of the four studied legume species required rhizobia to successfully coexist with other plant species. In contrast, the growth and survival of three grass and five forb species were not affected by the presence or absence of rhizobia. Finally, our results also showed that the legume species largely relied on symbiotically fixed nitrogen, both in the field and in the microcosms. This indicates that results in the microcosms are indicative for processes occurring in the field. It is concluded that symbiotic interactions between plants and prokaryotes can contribute to plant productivity, plant community structure and acquisition of limiting resources in legume-rich grassland communities.     

Composition and trophic structure of a fish community of a clear water Atlantic rainforest stream in southeastern Brazil

As part of a larger project that aimed to determine the factors that regulate fish productivity in a clear water river of the Atlantic rainforest, São Paulo State, Brazil, composition and the trophic structure of the fish community of the middle course of the river were studied from January 1995 to May 1996. Of the 17 species collected, Mimagoniates microlepis, Schizolecis guentheri, Phalloceros caudimaculatus and Kronichthys heylandi accounted for 83.2% of the total fish abundance. Most of the species were insectivorous (35.7%), followed by detritivores (21.4%), benthivores (14.2%), omnivores (14.2%), herbivores (7.1%), and piscivores (7.1%). Results of food overlap analysis as calculated by the Index of Morisita showed that 17.5% of the species pairs overlapped. Habitat segregation, however was observed among most of the species, suggesting some degree of food partitioning. Despite the characteristics of this escarpment river, which produces spates year round, no seasonal variation in diet was observed, suggesting that although food abundance may fluctuate throughout the year, most items are in constant supply. The importance of allochthonous food was considered and it appears that, though only a few species feed on this source (including detritivores), they make up 87.2% of the total fish abundance. The low abundance of most of the fishes, the high number of endemic species and the strong dependence of the species on a few food resources suggest that these systems are sensitive to anthropogenic impacts and require future studies.     

Seasonal variations in the benthos of a chalk trout stream,the River Samson,Belgium

Seasonal variations in the benthos of a Belgian chalk stream were investigated. Total biomass varies extensively over the year (30 to 100 g wet wt. m^–2). In summer, however, it is smaller than fish biomass. Densities range from 30 000 to 50 000 individuals m^–2, but the actual number of taxa is always near 60. Diversity indices (Shannon-Weaver and Pielou) exhibit slight fluctuations. Numerical indices are minimal in winter when the stream is in flood. Gravimetric indices are minimal in spring when biomass is maximal. Species-abundance curves almost always indicate a fauna with many rare species, with, also, some indication of a second maximum of moderately abundant species. Six taxa dominate: Oligochaeta, Gammarus fossarum, Ephemeroptera, Coleoptera, Trichoptera and Diptera. There are great fluctuations in their relative importance over a year. Thus, there seems to be a succession of peaks in densities of individual taxa permitting more efficient utilization of resources. However, biomass variations depend on the species involved. As a general rule, maximum biomass precedes maximum density.     

Microhabitat use by 0+ and older fishes in a small English chalk stream

The microhabitat use of two size/age classes of fish (0 +, ≥1+) in the River Lee, based on measurements of 14 environmental variables, was studied using point abundance sampling by electrofishing over the summer and autumn of 1995. Microhabitat use by all cyprinid species (barbel Barbus barbus, minnow Phoxinus phoxinus , chub Leuciscus cephalus and gudgeon Gobio gobio ) differed between 0+ and older (≥1+) with lentic, shallow, littoral environments being important for 0+ fishes, whereas deeper, faster areas in mid-channel were important for ≥ 1 + fishes. There was more overlap in microhabitat use by 0+ juvenile cyprinids in the River Lee than in larger systems such as the River Danube (Slovakia/Hungary) and River Great Ouse (U.K.).     

Composition, structure and distribution of the ichthyoplankton in a Mediterranean coastal lagoon

The species composition and assemblage structure of the ichthyoplankton from the Mar Menor Lagoon in south‐east Spain are given. The fish larvae were sorted from zooplankton samples collected at 20 stations with a plankton net (50 cm mouth diameter and 500 μm mesh) during 36 surveys between February and December 1997. A total of 39 575 fish larvae representing 14 families, 22 genera and 36 species were identified. Gobiidae was the most dominant family (77·0%) followed by Blenniidae (19·4%) and Atherinidae (1·3%). The most abundant species were Gobius niger and Gobius paganellus , which accounted for 42·7 and 19·3% of the total respectively. These species were followed in order of relative abundance by Pomatoschistus marmoratus (13·9%), Parablennius pilicornis (9·4%), Lipophrys pavo (7·7%), Atherina boyeri (1·3%) and Parablennius tentacularis (1·3%). The high species diversity (2·0–2·8 bits individual⁻¹ for the annual diversity spectra at each sampling station) reflected a diverse assemblage of species. The main commercial species in the lagoon (Sparidae and Mugilidae) were poorly represented among the ichthyoplankton and they probably enter the lagoon on the bottom as recruits. Chlorophyll a concentration in the water column was the main factor explaining the seasonal variation in larval abundance. Spatial distribution of larvae was related to hydrographical circulation patterns in the lagoon and the movement of marine‐spawned larvae through the channels connecting the lagoon with the Mediterranean Sea.     

The Colonization Response of Lotic Chironomid Larvae to Substrate Size and Heterogeneity

The colonization patterns of larval chironomid midges were studied on clean sieved sediments (range 0.25-4.0 mm; pure and mixed) placed in a third order stream in NW Pennsylvania, USA. Chironomid abundance and species richness were significantly different among four sites for homogeneous and mixed sediments. Species richness increased with sediment particle size. Fourteen of the 18 most common species had significant substrate preferences. The interpretation of two cluster analyses of sediment samples indicated two assemblages of chironomid species, each of which appeared to correlate with particular sediments, indicating some assemblage level sediment preference. Sediment size, but not heterogeneity, appears to be a strong factor in the species richness pattern of the community, and in the microhabitat choices of individual chironomid species, in this sandy environment.     

Correlations between chironomid pupal skin collections and habitats recorded from a chalk river

Chironomid pupal skins were collected during one year from three sites along a chalk stream in southern England. The sites had similar chemistry and discharge but differed in their current and temperature regimes. Substrate composition upstream of each collection point was surveyed during spring, summer and autumn. Proportions of macrophytes and sediments were compared with proportions of chironomid species and trophic groups. Seasonal changes in substrate and pupal skin collections were correlated by classification and direct ordination techniques. The distribution of chironomid species were indicated as being significantly related to the recorded substrate data.     

不同更新方式对林地植物群落特种多样性的影响

本文就人工林经营中的三种更新方式对植物群落中物种多样性的影响进行研究。结果表明,1200m^2样地物种丰富度为：天然更新159种,人促更新130种,人工造林94种;多样性指数（Dsh）分别为4.3004、3.9283、3.5048;多样性均匀度指数(Jsh)分别为0.8484、0.8070、0.7714。人工造林的营林干扰是物种丧失和林分物种多样性下降的主要原因。     

物种多度和径级尺度对于评价群落系统发育结构的影响: 以尖峰岭热带山地雨林为例

研究不同径级尺度群落系统发育多样性有助于了解不同年龄模式下物种的亲缘关系及其群落系统发育结构; 但是关于物种多度对群落系统发育结构影响的研究较少。以海南尖峰岭热带山地雨林群落为例, 首先在不同径级尺度比较物种多度加权与否分别对4个广泛采用的系统发育指数的影响, 继而利用其中2个经过标准化处理的系统发育多样性指数: 净种间亲缘关系指数(net relatedness index, NRI)和净最近种间亲缘关系指数(nearest taxon index, NTI), 结合群落的生境类型来量度不同局域生境条件下不同径级尺度木本植物系统发育关系。结果发现: (1)未考虑物种多度加权的系统发育平均成对距离(mean pairwise distance, MPD)指数比考虑物种多度加权的MPD指数显著地高估了群落整体系统发育多样性, 且这种现象在小径级尺度(1 cm≤DBH<5 cm)最为明显。因此, 在森林监测样地中对于中、小径级群落系统发育结构研究中建议考虑物种多度信息。(2) 从群落组成整体系统发育结构来看, 尖峰岭热带山地雨林在几乎所有径级尺度和生境下均倾向于系统发育发散, 且随着径级的递增发散程度趋于明显(NRI<0)。(3)从群落组成局部系统发育结构来看, 尖峰岭热带山地雨林在中、小径级倾向于系统发育聚集(NTI>0), 而在大径级(DBH≥15 cm)则倾向于系统发育发散(NTI<0)。总之, 研究群落系统发育结构时应考虑物种多度的影响以及径级尺度效应。     

Influence of anthropogenic disturbance on bird communities in a tropical dry forest: role of vegetation structure

A study was carried out in Sariska Tiger Reserve in India to investigate the effects of anthropogenic disturbance caused by biomass extraction on the bird communities of tropical dry forests. The study was based on comparisons of the avifaunal community as well as vegetation structure between strictly protected ('undisturbed') and intensively used ('disturbed') sites that were demarcated a priori on the basis of disturbance indicators. There was no significant difference in the number of recorded species and bird abundance between disturbed and undisturbed sites. However, bird species diversity was significantly lower in disturbed sites. Bird species composition was found to differ significantly between disturbed and undisturbed sites and was associated with the measured disturbance indicators. Changes in bird species composition occurred because of seven of 26 locally abundant bird species (26.9%) responding significantly to the disturbance regime. All the affected bird species are primarily insectivorous. Bird species composition was significantly related to six vegetation structural variables, including two that were significantly altered by disturbance. Changes in vegetation structure accounted for all the changes in bird species composition caused by disturbance. However, vegetation structure had additional effects on bird species composition besides those caused simply by disturbance. Thus, our study indicates that forest use in the form of chronic biomass extraction can have significant effects upon bird diversity and species composition of tropical dry forest. There is a need to retain a proportion of natural ecosystems as inviolate if the full complement of biodiversity is to be conserved.     

弃管杉木林杉木数量与群落物种多样性间的关系

森林群落物种多样性格局和动态一直是生态学的研究热点,人工林弃管后演替进程中物种多样性变化也很值得研究。杉木(Cunninghamia lanceolata)作为我国南方林区人工栽培最广、经济价值最高的用材树种之一,其人工林分布面积很大,通常群落结构简单、物种多样性低,然而群落中杉木数量如何影响植物物种多样性,迄今缺乏研究。在浙江省自然保护区内,选择不同疏伐强度和弃管时间的杉木人工林,建立了6个1 hm~2长期动态监测样地,在10 m×10 m、20 m×20 m、50 m×50 m和100 m×100 m尺度下,探究群落物种多样性(物种丰富度、Simpson指数、Shannon-Wiener指数和Pielou均匀度指数)的变化规律,分析杉木数量(多度和相对多度)对物种多样性的影响。结果显示：弃管前对杉木林的疏伐强度越高,演替恢复后的群落物种多样性越高。相同疏伐程度下,物种多样性随演替时间的延长有先升高后降低的趋势。取样尺度小于100 m×100 m时,杉木数量与物种多样性呈极显著负相关;100 m×100 m尺度下仅杉木相对多度与3种多样性指数呈显著负相关,杉木多度与各物种多样性均无显...     

仙居国家公园溪流摇蚊幼虫群落结构及其对水质的指示作用

为了解浙江仙居国家公园内溪流中摇蚊幼虫的群落结构及其对水质的指示作用,于2016年8月对仙居国家公园内13条溪流59个点位进行了调查,运用Hilsenhoff生物指数对溪流水质进行评价.结果表明: 59个点位中有37个点处于清洁状态,19个点处于轻污染状态,3个点处于中污染状态.此次调查共获得摇蚊幼虫86种,隶属于4亚科51属.其中,摇蚊亚科种类数最多,有19属37种;直突摇蚊亚科次之,有21属35种;长足摇蚊亚科有9属12种;寡角摇蚊亚科最少,为2属2种.摇蚊亚科密度比重最大,为40.3%;长足摇蚊亚科与直突摇蚊亚科所占比重差异不大,分别为30%与29.4%;寡角摇蚊亚科比重最小,仅为0.3%.壳粗腹摇蚊为仙居国家公园溪流摇蚊幼虫绝对优势种;黄色多足摇蚊、流环足摇蚊、平滑环足摇蚊、纽流长跗摇蚊和小型棒脉摇蚊为优势种.仙居国家公园溪流中摇蚊幼虫指示种分析结果显示,平滑环足摇蚊、双色矮突摇蚊、台湾长跗摇蚊和渐变长跗摇蚊可作为污染水体指示种,流环足摇蚊可作为清洁水体指示种.     

2013年夏威夷东南部海区表层砂壳纤毛虫的群落结构和分布特征

鉴于东太平洋热带海区表层砂壳纤毛虫和其他微型浮游动物的群落结构资料几乎空白, 我们于2013年8月14日至9月18日在夏威夷东南部海区的23个站位采样调查了表层砂壳纤毛虫群落。23个站位共采集到砂壳纤毛虫22属36种, 均为透明壳种类。各站砂壳纤毛虫种丰富度范围为15-21种, 总丰度范围为4,730-23,693个/m³, 生物量范围为9.60-88.61 μg C/m³。本海区主要优势种为镯形囊坎虫(Ascampbelliella armilla)、斯廷细瓮虫(Steenstrupiella steenstrupii)、薄壳真铃虫(Eutintinnus tenuis)和纤弱细瓮虫(Steenstrupiella gracilis), 这4种主要优势种的口径范围不同。     

泰山丛枝菌根真菌群落结构特征

2007年对泰山植被根围内丛枝菌根(arbuscular mycorrhiza,AM)真菌群落组成、数量、分布及其与植物多样性的关系进行了研究。从泰山傲徕峰、黑龙潭库区等样地共分离出4属16种AM真菌:球囊霉属Glomus 9种、无梗囊霉属Acaulospora 4种、巨孢囊霉属Gigaspora 2种和盾巨孢囊霉属Scutellospora1种。其中,球囊霉属Glomus及聚球囊霉Glomus fasciculatum的孢子密度、相对多度、分布频度和重要值均最高,分别为泰山植被区根围内AM真菌优势属和优势种。各样地之间Sorenson相似系数在0.60和0.85之间。植被数量与孢子密度(r=0.80,p0.01)、植物种的丰富度与AM真菌种的丰富度(r=0.77,p0.01)以及与孢子密度(r=0.59,p0.01)均呈极显著正相关关系。研究结果表明植物多样性对于提高AM真菌多样性发挥极为重要的作用。     

宫颈上皮内瘤变与宫颈微生物群落结构的相关性

目的分析宫颈上皮内瘤变与宫颈微生物群落结构的相关性。方法选取2017年1月至2018年10月于我院就诊的253例女性进行回顾性分析,根据是否患有宫颈上皮内瘤变分为CIN组(86例)及对照组(167例)。采集纳入对象的宫颈菌群并提取细菌基因组DNA,对细菌16S rRNA V3、V4区片段进行PCR扩增,并采用Illuminate Miseq测序平台对PCR产物进行测序,分析两组对象宫颈微生物群落结构,并分析患者宫颈微生物群落结构与宫颈上皮内瘤变的相关性。结果两组对象宫颈微生物群落的Simpson指数及Shannon指数比较差异无统计学意义(t=1.474、1.636,P0.05),而CIN组的Chao指数及ACE指数均高于对照组(t=9.213、10.420,P0.05)。16S rRNA分析显示放线菌是宫颈部位的主要菌群。CIN组女性宫颈微生物群落中放线菌、奇异菌属、放线菌门、阴道奇异菌及奇异变形菌占主要优势(LDA4log10),对照组中杆菌、厚壁菌门等占主要优势。Spearman相关分析示卷曲乳杆菌、惰性乳杆菌、格氏乳杆菌、詹氏乳杆菌与宫颈上皮内瘤变呈负相关,而加特纳菌、阴道奇异菌、普雷沃氏菌、粪球菌与宫颈上皮内瘤变呈正相关(均P0.05)。结论 CIN女性宫颈菌群与健康女性存在明显差异,其中卷曲乳杆菌、惰性乳杆菌、格氏乳杆菌、詹氏乳杆菌与宫颈上皮内瘤变呈负相关,而加特纳菌、阴道奇异菌、普雷沃氏菌、粪球菌与宫颈上皮内瘤变呈正相关。     

Polychaete community structure of the northwestern coast of Mexico: patterns of abundance and distribution

In August 1998, 72 benthic stations were sampled off the northwestern coast of Mexico. A baseline survey of the polychaete macrofauna was carried out for the southernmost portion of the Southern California Bight (SCB) region. Spatial patterns of polychaete assemblages were characterized to determine evidence of environmental impact from point sources of wastewater discharge near the study area, and to define a standard against which to detect future change. A total of 4231 polychaetous annelids representing 38 families and 210 species were identified, which constituted 53% of the total macrofauna. Families with highest species richness were Spionidae (18 spp.), Onuphidae (15 spp.), and Terebellidae (14 spp.). Species with greatest abundances were Spiophanes duplex (490 ind.), Spiophanes fimbriata (330 ind.), Lanassa sp. D (209 ind.), Pectinaria californiensis (138 ind.), and Euclymeninae sp. A (124 ind.). Based on polychaete assemblages, communities for the southernmost SCB were found to be composed primarily of non-opportunistic species, and no numerically dominant species were found. High values of polychaete diversity (H) indicated the majority of the area of study could be considered an undisturbed environment. Principal Components Analysis (PCA) applied to environmental and faunistic parameters indicated depth, organic carbon, and sediment grain size as the main influences determining the polychaete faunal communities.