Numerical taxonomy of some taxa of the genus Fucus in the Iberian Peninsula

A study of morphological variation patterns in three Iberian Fucus species has been carried out. Data on 36 features from 113 specimens have been studied by numerical methods (PCA, discriminant analysis and ANOVA).The PCA ordination displayed a continuous trend of variation in the following Fucus species: F. ceranoides, F. vesiculosus and F. spiralis. However, no obvious morphological discontinuities have been observed. In addition, three varieties of F. spiralis and five of F. vesiculosus have been identified.At the varietal level discriminant functions could be used for identifying 93–100% of the individuals within F. vesiculosus and 72–91% of F. spiralis.The most discriminating diagnostic character appeared to be the midrib size, as detected by ANOVA procedures.Some qualitative characters, such as presence of vesicles, dioecious-monoecious character and receptacle edge shape, frond and receptacle shape, have been also important for discriminating specific and infraspecific taxa.A nomenclatural discussion of varietal taxa is also included.     

On some principles of taxonomy

In eukaryotes, in contrast to prokaryotes, phyletic lineages are usually quite distinct. Therefore, the best classifications of eukaryotes are usually phylogeny-based. However, in many groups of organisms, higher rank taxa are based on horizontal rather than phyletic groups or, more precisely, on groups of the mixed type. This is largely true for vertebrates where the division into fishes and tetrapods or into anamniotes (nonamniotes) and amniotes is just of the mixed type. Frequent parallelisms in these cases make the strict adherence to the principle of monophyly senseless and imply a compromise system. Strict cladistic practice violates this approach and ignores Hennig’s rule that his methodology should only be applied to synchronous organisms.     

Numerical survey of some bacterial taxa

Focht, D. D. (Iowa State University, Ames), and W. R. Lockhart. Numerical survey of some bacterial taxa. J. Bacteriol. 90:1314-1319. 1965.-A numerical analysis was made of 77 properties of each of 43 bacterial strains, representing 25 genera from 8 families in the orders Eubacteriales and Pseudomonadales. Four major groups were found, related to one another at approximately the same level of similarity: (1) a large cluster containing the subgroups (1a) Athiorhodaceae-Spirillaceae, (1b) Xanthomonas, and (1c) "inactive" Micrococcaceae-Achromobacteraceae; (2) a cluster containing the "active" Micrococcaceae and Lactobacillaceae; (3) the enterobacteria; and (4) Aeromonas. There was a sharp distinction between the branches of groups 1a, 1c, and 2. The composition of groups was essentially the same whether or not fermentation of carbohydrates (28 characters) was included in the analysis. Several individual strains, notably, Bacillus subtilis, Leuconostoc mesenteroides, Pseudomonas aeruginosa, and Erwinia amylovora, were related to none of the groups, and others (two species of Proteus, Flavobacterium devorans, and Lactobacillus casei) showed only minimal quantitative relationships with their groups. These results suggest that there may be significant variation in levels of similarity within microbial groups presently accorded equivalent taxonomic rank, and that some present distinctions among taxa, particularly at the generic level, cannot be confirmed on the basis of overall similarity.     

Quantitative analysis of compensatory and catch-up growth in diverse taxa

1.?'Compensatory growth' and 'catch-up growth' are often used interchangeably to describe the faster than optimal growth that occurs following a period of dietary restriction in the development of many animals. Concerns about the statistical analysis of these studies have drawn attention to the risk of false detection in reports of compensatory and catch-up growth. 2.?This study aims to quantify the degree to which these compensatory responses occur across the animal kingdom. In addition, this study distinguishes the two terms, 'compensatory growth' and 'catch-up growth', to clarify the fitness consequences of rapid growth. Compensatory growth refers to a faster than usual growth rate, while catch-up growth implies attainment of control size. 3.?Eight meta-analyses and meta-regression analyses were conducted on data extracted from 88 papers, including 11 taxonomic classes. The results confirmed that both growth tactics (i.e. compensatory and catch-up growth) occur across a wide range of taxa and result in decreased direct fitness components. 4.?Importantly, the meta-analytic methods used made it possible to identify the specific experimental techniques that most successfully promoted rapid growth after restriction and key differences in the responses of the four major groups (mammals, birds, fish and arthropods) to dietary restriction. Endotherms are more likely to show a compensatory growth response because of their determinate growth; in contrast, the indeterminate and saltatory growth tactics of fish and arthropods reduce the pressure to rapidly achieve a large size. 5.?Among the first meta-analyses to be conducted in this field, this study provides valuable support for the premises of compensatory and catch-up growth and also discusses weaknesses in experimental design, and possible solutions, in compensatory growth research. For example, we recommend conducting the experiment within the most linear phase of an animal's growth to avoid analytical complications arising from size-dependent growth, and our results indicate that dietary dilution more closely resembles quantitative restriction than clutch size and intermittent feeding restriction methods when normal quantitative restriction is not possible.     

Numerical taxonomy of some species of hypoxylon

Numerical analysis has resulted in a division of the coloured and non-coloured species ofHypoxylon. It is suggested that the coloured papillate species e.g.H. multiforme are more closely related toH. fragiforme and members of the Hypoxylon section than to non-coloured papillate species as indicated in the current classification of the genus.The relationships betweenHypoxylon, Daldinia andRosellinia are discussed.     

Numerical taxonomy of some charophytes in Iran

Morphological characters of 10 species of Chara from different localities in northern, western and central Iran have been analyzed, with Nitella hyalina and Tolypella glomerata as outgroups. Phenetic and cladistics analyses of populations belonging to the 10 Chara species were undertaken to reveal their inter‐population morphological variation and inter‐specific relationships. Clustering was based on 54 characters (41 qualitative and 13 quantitative). This produced two major clusters, grouping Chara crassicauliss, C. vulgaris var. longibracteata, C. vulgaris var. vulgaris and C. contraria separate from C. grovesii, C. gymnophylla var. gymnophylla, C. gymnophylla var. rohlenae, C. kirghisorum and C. tomentosa. A smaller cluster of C. socotrensioides, C. fibrosa and Chara sp. was separate from these two clusters. A factor analysis identified the most variable morphological characters as type of cortification, prescence and length of the spine cells, stipulode length, type of branchlet cortication, bract cells length, placement of the gametangia, character of end segment, length of branchlet and internode, development of posterior bract cells, oogonia length and width, oospore length, width and length/width ratio, fossa breath, and number of striae.     

Cytogenetics and taxonomy of some South Bolivian monkeys.

Illustrations are given by the authors of chromosome banding patterns of three species of monkeys: douroucouli, black-capped capuchin and squirrel monkey. The precise locality of the animals in southern Bolivia is known. This enables a taxonomic discussion on the value of some names of these animals.     

Numerical taxonomy of some non-saccharolytic and saccharolytic Bacteroides species

Various Bacteroides spp. were examined by physiological tests, presence of specific enzymes, antibiotic sensitivity, menaquinone composition and a few miscellaneous tests. The data matrix containing 58 strains and 55 unit characters was examined using Gower's similarity coefficients (SG) and included matching negative character states and multistate characters. The highly saccharolytic strains were separated from the less saccharolytic and non-fermentative strains at the 55% similarity level; while at the slightly higher level of 63% strains of Capnocytophaga (formerly Bact. ochraceus) were recovered as a compact phenon distinct from other saccharolytic species. The phenogram was divided into 6 clusters at 72% similarity level. Most of the 'Bact. fragilis group' of species clustered in one phenon while Bact. melaninogenicus ssp. melaninogenicus, Bact. bivius and a new species, Bact. denticola, formed another group. Another phenon comprised the saccharolytic non-pigmented species closely related to Bact. oralis such as Bact. buccalis and Bact. pentosaceus. The less saccharolytic strains of Bact. melaninogenicus ssp. intemedius and Bact. disiens were recovered in a distinct phenon. The low affinity (less than 55% similarity) between the two subspecies of Bact. melaninogenicus emphasised the need for reclassifying these taxa into separate species. The non-fermentative and very weakly saccharolytic strains formed good taxospecies. The separation of this cluster into three subclusters is in excellent agreement with chemotaxonomic data now available.     

Numerical taxonomy of some non-saccharolytic and saccharolytic Bacteroides species

Various Bacteroides spp. were examined by physiological tests, presence of specific enzymes, antibiotic sensitivity, menaquinone composition and a few miscellaneous tests. The data matrix containing 58 strains and 55 unit characters was examined using Gower's similarity coefficients (S _G ) and included matching negative character states and multistate characters. The highly saccharolytic strains were separated from the less saccharolytic and non-fermentative strains at the 55% similarity level; while at the slightly higher level of 63% strains of Capnocytophaga (formerly Bact. ochraceus ) were recovered as a compact phenon distinct from other saccharolytic species. The phenogram was divided into 6 clusters at 72% similarity level. Most of the ' Bact. fragilis group' of species clustered in one phenon while Bact. melaninogenicus ssp. melaninogenicus, Bact. bivius and a new species, Bact. denticola , formed another group. Another phenon comprised the saccharolytic non-pigmented species closely related to Bact. oralis such as Bact. buccalis and Bact. pentosaceus. The less saccharolytic strains of Bact. melaninogenicus ssp. intermedius and Bact. disiens were recovered in a distinct phenon. The low affinity (less than 55% similarity) between the two subspecies of Bact. melaninogenicus emphasised the need for reclassifying these taxa into separate species. The non-fermentative and very weakly saccharolytic strains formed good taxospecies. The separation of this cluster into three subclusters is in excellent agreement with chemotaxonomic data now available.     

Cell-wall composition and taxonomy of Cephaloascus fragrans and some Ophiostomataceae

Carbohydrates of intact cells and cell walls were studied by gas-liquid chromatographical analysis after acid hydrolysis. Isolated cellulose was determined by infrared spectrophotometry, pyrolysis mass spectrometry and histochemistry. Biochemical characters do not support an assumed relationship between Ophiostoma (including Europhium) and Cephaloascus fragrans. Cephaloascus fragrans differs from Ophiostoma by a high mannose content and by the absence of cellulose and rhamnose. A relationship between Cephaloascus fragrans and Ceratocystis cannot be excluded on the basis of the biochemical characters, although there is a marked difference in conidiogenesis. Saprolegnia ferax (Oomycetes) was included as a cellulose-containing fungus for comparison.     

Some tropical African Lobeliaceae. Chromosome numbers, new taxa and comments on taxonomy and nomenclature

Chromosome numbers of 21 taxa in Lobelia L. and Cyphia Berg, are reported, the majority being new records. 2n = 18 in Cyphia is a new generic report. The new species Lobelia paludigena Thulin (Zaire), L. kundelungensis Thulin (Zaire), L. cheranganiensis Thulin (Kenya) and L. corniculata Thulin (Swaziland and Natal) are described. The distributions of these species, as well as of L. thermalis Thunb., are mapped. L. kalobaënsis E. Wimm. ex Thulin is validated. The new combinations L. trullifolia Hemsl. ssp. delicatula (Compton) Thulin and L. flaccida (Presl) A. DC. ssp. gnmvikii (T. C. E. Fries) Thulin are made. Typifications are provided for the following names: L. stuhlmannii Schweinf. ex Stuhlm., L. gregoriana Bak. f., L. fervens Thunb., L. anceps L. f. and L. depressa L. f.     

Molecular biological taxonomy of some free-living nitrogen-fixing bacteria

A novel approach to the taxonomy of several free-living nitrogen-fixing bacteria is proposed on the basis of two DNA parameters. 1) DNA base composition, expressed as average molar (guanine + cytosine) content, determined by thermal denaturation and 2) DNA homology, determined by DNA hybridization with bothPseudomonas fluorescens andPseudomonas putida. The following taxonomic conclusions emerged:

1. 1.
   The existence ofBeijerinckia andDerxia as individual genera seems justified.     
   
   

分子绝对进化速率与物种分歧时间之间的定量关系

通过对美国国家生物技术信息中心数据库Gen Bank提供的一些蛋白质和核苷酸序列进行比对和分析,发现生物分子绝对进化速率k与进化时间或物种分歧时间t之间存在下列定量关系:lnk=-Ea/Rt+lnK0,式中Ea为位点突变活化能,k0为分子极限绝对进化速率,R为常数,并对其生物学意义进行了初步的探讨;数据分析还揭示出物种的分子极限绝对进化速率与进化时间或物种分歧时间之间也服从相似的定量公式,也就是说生物分子进化过程可能同时受到序列位点突变和控制物种分子极限绝对进化速率进化的两个"分子钟"作用,即存在"双重分子钟"现象。