香菇HMG-box转录因子lelcrp1基因的功能

【目的】研究香菇(Lentinula edodes) HMG-box转录因子LELCRP1 (Lentinula edodes lignocellulase genes regulation protein 1)在木质纤维素降解相关酶基因表达中的功能与作用。【方法】通过double-joint及同源重组方法构建lelcrp1基因RNAi载体,采用根癌农杆菌介导转化的方法转入香菇异核菌株W1菌丝中,筛选得到RNAi转化子,通过Southern杂交检测插入片段在菌株W1基因组中的拷贝数量。采用荧光定量PCR检测RNAi转化子木质纤维素降解酶基因表达水平变化,并在含有3.5μg/mL潮霉素的MYG平板上测定RNAi转化子的菌丝生长速度。【结果】获得了4个lelcrp1基因表达水平与出发菌株W1相比显著下调6–7倍的RNAi转化子。Southern杂交结果显示,lelcrp1基因RNAi片段已成功整合至香菇菌株W1基因组内,并以单拷贝形式存在。对其中2个RNAi转化子的26个木质纤维素降解酶基因表达水平进行分析,发现其中9个纤维素酶基因、1个半纤维素酶基因、2个辅助酶AA9基因和1个锰过氧化物酶基因的表达水平均表现出明显的下调。平板生长试验表明,RNAi转化子菌丝生长速度均显著慢于出发菌株W1。【结论】通过RNAi技术成功抑制了香菇异核菌株中lelcrp1基因表达水平,并导致部分纤维素及木质素酶基因表达水平相应下调,首次发现HMG-box结构域的转录因子能调控木质纤维素降解相关酶基因表达。     

In vitro cytostatic and immunomodulatory properties of the medicinal mushroom Lentinula edodes

Lentinula edodes, known as “shiitake” is one of the widely used medicinal mushrooms in the Orient. Antitumour activity of extracts of this mushroom has been widely demonstrated in animals and humans. However, this activity was shown to be host mediated and not by direct cytotoxic activity to cancer cells. This study demonstrates cytotoxic and cell growth inhibitory (cytostatic) effect of aqueous extracts of the mushroom on MCF-7 human breast adenocarcinoma cell line using an MTT cytotoxicity assay. Such effect was demonstrated with fruit body and mycelial extracts, the difference being that there was no significant suppression on normal cells with the latter. Furthermore mycelial extracts did not induce any cytostatic effect in both cancer and normal cell lines based on a DNA synthesis assay. The significant suppression of the proliferation of cancer cells was reflected by the comparatively low IC₅₀ values and the simultaneous higher respective values on normal fibroblast cells. The immunostimulatory activity of both fruit body and mycelial extracts was tested by the lymphocyte transformation test (LTT), which is based on the capacity of active immunomodulators to augment the proliferative response of rat thymocytes to T mitogens in vitro. Both fruit body and mycelial preparations were able to enhance the proliferation of rat thymocytes directly and act as co-stimulators in the presence of the T-mitogen PHA. Interestingly both extracts, similarly to zymosan showed SI_comit/SI_mit ratios of about 2, indicating adjuvant properties. Overall L. edodes aqueous extracts have demonstrated direct inhibition of the proliferation of human breast cancer cells in vitro and immunostimulatory properties in terms of mitogenic and co-mitogenic activity in vitro.     

巴西橡胶树HbSUT3和HbSUT5 mRNA在嫩茎和中脉中的原位杂交分析

为研究巴西橡胶树(Hevea brasiliensis)中HbSUT3和HbSUT5基因的功能,采用地高辛标记的RNA探针与橡胶树嫩茎和中脉两种组织切片分别进行RNA原位杂交,对这2种SUT基因在组织中的表达区域与表达特点进行了分析。结果表明,在橡胶树嫩茎中,两个SUT基因主要在树皮的韧皮部和皮层细胞中表达;在中脉中,两个SUT基因在除木质部导管系统外的其它部位均有表达;HbSUT3基因在嫩茎和中脉中的表达量相近,而HbSUT5基因在嫩茎中的表达量远高于中脉。这些揭示HbSUT3和HbSUT5基因可能广泛参与韧皮部装载、蔗糖运输与库细胞供给等活动,同时两个SUT基因也存在功能分化。     

巨桉EgrGBF1基因的克隆和表达模式分析

G-box结合蛋白(GBF)是一类能够识别并结合G-box的转录因子,广泛参与植物基因响应外界刺激的表达调控。通过巨桉(Eucalyptus grandis)初生生长到次生生长的转录组测序筛选出差异表达基因EgrGBF1,为探讨其在桉树生长发育中的功能,从巨桉中克隆了该基因,并进行了结构和进化分析。结果表明,EgrGBF1编码区长度为984 bp,编码327个氨基酸, 存在2个转录本,分别命名为EgrGBF1α和EgrGBF1β。实时荧光定量PCR结果表明,EgrGBF1α和EgrGBF1β在不同组织中,不同激素、胁迫处理下的表达模式不同,EgrGBF1α主要在茎尖表达,沿节间向下表达量逐渐降低,而EgrGBF1β在韧皮部高表达,在节间的表达量无显著差异。在水杨酸和缺硼处理下,EgrGBF1α和EgrGBF1β的表达趋势相反。EgrGBF1α在缺磷处理168 h的表达量最高,而EgrGBF1β在处理6 h的表达量最高。因此,EgrGBF1在桉树生长发育以及响应胁迫中发挥着重要作用,且转录本EgrGBF1α和EgrGBF1β可能具有不同的功能。     

纤枝短月藓BeLEA2基因的克隆及表达分析

为探究纤枝短月藓LEA2基因的结构和表达特征,该研究以纤枝短月藓为材料,首次利用PCR克隆技术得到纤枝短月藓BeLEA2基因序列,并对该基因进行分析。结果表明:(1)该基因序列中含有2个外显子和1个内含子,其开放阅读框(ORF)为456 bp,编码151个氨基酸,预测其相对分子质量为16515.96 Da。(2)将纤枝短月藓与其他植物LEA2基因氨基酸序列进行比对,构建系统进化树,结果显示纤枝短月藓与小立碗藓的亲缘关系最近。(3)利用HiTail-PCR技术克隆获得1072 bp的BeLEA2启动子序列,用PlantCARE在线工具对该启动子的顺式作用元件进行预测,结果表明该启动子除了含有核心启动子元件TATA-box和CAAT-box外,还含有ABRE、MYB、MYC、MYB结合位点(MBS)等其他顺式元件。(4)实时荧光定量PCR分析表明,BeLEA2基因在纤枝短月藓不同发育时期和不同组织中都有表达,且对脱水胁迫有响应。以上结果为进一步探究LEA2基因在苔藓植物中的功能及作用机制奠定了基础。     

单分子荧光原位杂交（smFISH）技术及应用

单分子荧光原位杂交（single-molecule fluorescence in situ hybridization,smFISH）技术是一种通过用偶联荧光基团的寡核苷酸探针,对固定细胞或组织中单个mRNA分子进行成像的方法。smFISH可对RNA进行定位、定量,以此对目标转录本进行实时研究。smFISH适用于细胞、组织切片等多种类型生物样本。近年来,多种基于基础smFISH的改进技术被发明,进一步促进了该技术的实际应用。smFISH良好的RNA单分子可视化能力,使得其在发育生物学、神经生物学及肿瘤生物学等基础生物学科中得到了广泛的应用。本文综述了smFISH技术基本原理、smFISH技术的局限性、smFISH衍生技术方法、smFISH在不同生物学科中的应用进展,并对smFISH技术的发展前景做出展望。     

西葫芦CpWRKY2基因的分离、鉴定及其对非生物胁迫分析

为了解西葫芦(Cucurbita pepo)的WRKY2的功能,通过转录组测序技术从叶片中分离到1条长度为1 071 bp的c DNA,并对其进行序列分析。结果表明,该序列包含1个840bp的开放读码框,预测编码279个氨基酸,与中国南瓜(Cucurbita moschata,XM＿023091218.1)的WRKY核苷酸序列相似性为98.51%,命名为CpWRKY2 (GenBank登录号:XM＿023676898.1)。CpWRKY2定位于细胞核内,CpWRKY2蛋白包含有1个保守的WRKY结构域(第201～267位),206～266位为WRKY蛋白DNA结合区域,锌指结构域(第232～264位)为C2H2型,且含有1个保守RTGHARFRRAP (第76～86位)氨基酸序列,属于典型的Ⅱd亚类WRKY家族蛋白。CpWRKY2基因上游启动子区域(ATG前的1 513 bp的序列)含有ARE、ABRE、MBS、TCrichrepeat和W-box等可能的胁迫响应顺式作用调控元件。CpWRKY2具有组织表达特异性,在花中表达量最高,其次为根和茎,在叶片和果实中的表达量较低。经5℃、10...     

BHC80基因抑制对斑马鱼胚胎红细胞发育的影响

胚胎整体RNA原位杂交显示,BHC80基因表达主要集中在中枢神经系统部位． 应用吗啡啉修饰的反义寡核苷酸技术抑制BHC80基因表达,显示胚胎红细胞减少并堆积在PBI区,用胚胎期红细胞标志βe3 globin以及造血过程中的重要转录因子gata1、c-myb、lmo2的胚胎整体RNA原位杂交实验显示,BHC80基因表达下调使gata1标记胚胎红系前体细胞增殖增多并且分化延迟,导致红细胞减少和PBI区红细胞堆积． 血管内皮标志基因flk-1的RNA探针原位杂交和荧光显微造影显示,BHC80基因表达下调组血管与对照组相比清晰可见无明显差异．     

NirA1基因对球孢白僵菌生长、抗逆及毒力的影响

[目的] 探究参与硝酸盐同化的一个特异转录因子NirA1对球孢白僵菌（Beauveria bassiana）生长、抗逆及毒力的影响。[方法] 利用RT-PCR检测球孢白僵菌NirA1基因在不同培养基中的表达特征。通过构建敲除突变株ΔNirA1、超量表达OENirA1及回复互补菌株ComNirA1,解析NirA1在球孢白僵菌生长发育、逆境胁迫反应和致病昆虫中的功能。[结果] NirA1基因在营养较贫瘠的CZB培养基中表达量高于丰富培养基PDB和SDB。敲除NirA1导致了菌株在人工培养基上的生长缓慢,对NaNO₂和Urea的利用效率降低。RT-PCR显示,ΔNirA1中硝酸盐转运蛋白基因NrtA的表达较野生型显著下调。在CZA、PDA和1/4 SDAY培养基中,其分生孢子产量分别较野生型降低了21.6%、16.2%和25.6%。逆境胁迫分析发现,在高温（32℃）,高渗（1 mol/L NaCl）和H₂O₂处理后,ΔNirA1菌落生长抑制率较野生型分别降低29.0%、25.2%及49.0%;但在添加SDS和刚果红（CR）的处理中,突变体菌落的生长抑制率分别较野生型升高34.1%和96.2%。因此,缺失NirA后,菌株对SDS和CR更加敏感,但对高温、H₂O₂和NaCl的耐受性提高。以3龄的大蜡螟为试虫的毒力测定表明,敲除NirA1基因导致菌株的毒力提高,半致死时间较野生型提前17.4%。[结论] NirA1在球孢白僵菌生长过程中参与了氮源的利用,并在球孢白僵菌的菌落生长、分生孢子生产、胁迫反应和致病宿主过程中发挥了重要作用。     

茶树CsCBF1基因克隆和转录活性分析

采用RACE技术克隆了一个受冷诱导的茶树CBF基因全长cDNA,命名为CsCBF1(GenBank登录号为EU563238)。CsCBF1cDNA全长序列为1 211bp,开放阅读框编码259个氨基酸。氨基酸序列分析表明,CsCBF1具有CBF家族典型的保守结构域,与其他植物的CBF具有较高的相似性;与拟南芥、辣椒和橡胶树编码的CBF相似性分别为56%、63%和56%。亚细胞定位结果表明,CsCBF1位于细胞核内。分别将10个CsCBF1缺失突变体与GAL4DNA结合域融合的结果显示,CsCBF1的羧基末端酸性结构域(第137位氨基酸至259位氨基酸)在酵母中具有转录激活活性。实时定量RT-PCR分析表明,CsCBF1基因受低温的快速诱导表达。     

粉葛PtCHI基因的克隆、原核表达和亚细胞定位

为探究葛根品种间异黄酮类物质代谢关键酶基因PtCHI的分子机制差异，并揭示其品种间异黄酮物质含量差异的原因，该研究以野葛品种‘桂葛8号’和粉葛品种‘桂葛1号’为材料，经乙醇提取并通过高效液相色谱仪对野葛和粉葛中葛根素和总黄酮的含量进行测定，基于已报道的野葛CHI基因，通过同源克隆方法分离粉葛中PtCHI基因，并在体外进行蛋白表达，同时在拟南芥原生质体中研究PtCHI基因的定位。结果表明：(1)野葛中的葛根素含量显著高于粉葛的，野葛的总黄酮含量也高于粉葛但未达到显著水平。(2)成功分离到粉葛PtCHI基因，长度为742 bp且包含672 bp完整的ORF框，编码223个氨基酸，与野葛的CHI基因具有99%的同源性。(3)CHI基因在粉葛中的表达量为茎>根>叶子，在野葛中则为根>茎>叶子，除叶子外野葛中CHI基因的表达量均显著高于粉葛。(4)经预测，粉葛PtCHI蛋白为稳定的亲水性蛋白且大小为27.8 kD,二、三级结构以α-螺旋为主，具有25个磷酸化位点，与野葛、大豆和乌拉尔甘草的亲缘关系较近，与F3H2、F3H、4CL4、DFR2及CHS发生互作的可能性较大。(...     

Cloning and analysis of CUT1, a cutinase gene from Magnaporthe grisea

Summary A gene from Magnaporthe grisea was cloned using a cDNA clone of the Colletotrichum gloeosporioides cutinase gene as a heterologous probe; the nucleotide sequence of a 2 kb DNA segment containing the gene has been determined. DNA hybridization analysis shows that the M. grisea genome contains only one copy of this gene. The predicted polypeptide contains 228 amino acids and is homologous to the three previously characterized cutinases, showing 74% amino acid similarity to the cutinase of C. gloeosporioides. Comparison with previously determined cutinase sequences suggests that the gene contains two introns, 115 and 147 bp in length. The gene is expressed when cutin is the sole carbon source but not when the carbon source is cutin and glucose together or glucose alone. Levels of intracellular and extracellular cutinase activity increase in response to growth in the presence of cutin. The activity level is higher in a transformant containing multiple copies of the cloned gene than in the parent strain. Non-denaturing polyacrylamide gels stained for esterase activity show a single major band among intracellular and extracellular proteins from cutin-grown cultures that is not present among intracellular and extracellular proteins prepared from glucose-grown or carbon-starved cultures. This band stains more intensely in extracts from the multicopy transformant than in extracts from the parent strain. We conclude that the cloned DNA contains a M. grisea gene for cutinase, which we have named CUT1.     

镉胁迫对瘤突苍耳、苍耳及其杂合体种子萌发与幼苗生长的影响

入侵种与本地种杂交可能会改变其某些性状,影响其生理生化过程,增强其对一些重金属的耐受性。镉是目前造成土壤污染的主要重金属元素之一,为探讨杂交是否能够增强植物对重金属镉的耐受性,采用培养皿滤纸法比较了不同浓度镉(0,10,40,80和120 mg/L)处理下瘤突苍耳(Xanthium strumarium)、苍耳(Xanthium sibiricum)及二者杂合体(X.strumarium♀×X.sibiricum♂,X.sibiricum♀×X.strumarium♂)种子萌发与幼苗生长情况。结果表明:1)入侵种瘤突苍耳与本地种苍耳之间存在杂交现象;2)镉促进了杂交瘤突苍耳(X.strumarium♀×X.sibiricum♂)种子的萌发,当镉浓度为80 mg/L时,其萌发率、发芽势、发芽指数最高;3)杂交瘤突苍耳在80、120 mg/L镉处理下根长和叶绿素含量低于瘤突苍耳,但子叶受到的氧化胁迫并未高于瘤突苍耳。研究结果显示,杂交有可能提高了瘤突苍耳在高浓度镉胁迫时对重金属镉的转运能力,幼苗根系吸收大量的镉并向上运输给子叶,导致根系生长受到抑制、子叶叶绿素含量下降,抗氧化酶系统可能在降...     

Simultaneous detection of double-stranded RNA-induced protein kinase and its specific mRNA by single cell analysis

Fluorescent in situ hybridization was combined with flow cytometry to detect the expression of the double-stranded-RNA-induced protein kinase (PKR) in single cells. Labeled anti-sense oligonucleotide was used to target the specific mRNA while the protein was targeted with an antibody. It was demonstrated that the PKR-mRNA signal could be protected through a lengthy immunostaining procedure. The expression pattern of the PKR-mRNA with respect to DNA content was shown to be comparable to that of 18S ribosomal RNA.     

Karyotyping of Brassica oleracea L. based on rDNA and Cot -1 DNA fluorescence in situ hybridization

To explore an effective and reliable karyotyping method in Brassica crop plants, Cot-1 DNA was isolated from Brassica oleracea genome, labeled as probe with Biotin-Nick Translation Mix kit, in situ hybridized to mitotic spreads, and where specific fluorescent bands showed on each chromosome pair. 25S and 5S rDNA were labeled as probes with DIG-Nick Translation Mix kit and Biotin-Nick Translation Mix kit, respectively, in situ hybridized to mitotic preparations, where 25S rDNA could be detected on two chromosome pairs and 5S rDNA on only one. Cot-1 DNA contains rDNA and chromosome sites identity between Cot-1 DNA and 25S rDNA was determined by dual-colour fluorescence in situ hybridization. All these showed that the karyotyping technique based on a combination of rDNA and Cot-1 DNA chromosome landmarks is superior to all but one. A more exact karyotype of B. oleracea has been analyzed based on a combination of rDNA sites, Cot-1 DNA fluorescent bands, chromosome lengths and arm ratios. __________ Translated from Journal of Wuhan University (Nat. Sci. Ed.), 2006, 52(2): 230–234 [译自: 武汉大学学报 (理学版)]     

A novel method for the cloning of chromosomal mutations in a single step: Isolation of two mutant alleles of envZ, an osmoregulatory gene from Escherichia coli

Summary We have developed a simple, rapid and powerful method for the cloning of chromosomal mutations from total cellular DNA in a single step using a plasmid carrying the clined wild-type locus of interest and a convenient selectable marker such as antibiotic resistance. This method relies upon the ability of the cloned wild-type gene to form a heteroduplex with the mutant chromosomal locus. The plasmid from primary transformants can be screened rapidly by size; more than 50% of plasmids of the correct size contained the mutant locus. When this method was used to clone two chromosomal mutations in the envZ gene of Escherichia coli, a locus which encodes a membrane-bound sensory protein involved in the osmoregulation of outer membrane porin biosynthesis, more than 50% of the retransformants from the plasmids selected by size were found to exhibit the mutant phenotype. Preliminary characterization of these mutant alleles is discussed. This novel and powerful method should be generally applicable in any system where the cloned locus is available.This work was presented at the 86th Annual Meeting of the American Society for Microbiology, March 1986, Washingnton, D.C.     

柠条锦鸡儿F3H基因克隆及功能分析

柠条锦鸡儿为豆科灌木,对各种环境胁迫具有较强的适应能力,类黄酮是天然的抗氧化剂,花青素属类黄酮化合物,逆境胁迫会影响植物体内花青素的合成,而黄烷酮3-羟化酶(F3H)是花青素生物合成所必需的一种关键酶。该研究成功分离克隆了柠条锦鸡儿的F3H基因,命名为CkF3H。CkF3H基因的开放阅读框(ORF)为1095 bp,编码364个氨基酸,推测的蛋白质分子量为41.3 kDa,理论等电点为5.9。生物信息学分析发现,CkF3H基因序列与其它植物F3H有较高的一致性,推测CkF3H蛋白与其它植物F3H蛋白具有相似的功能。利用染色体步移法克隆得到CkF3H起始密码子ATG上游468 bp的启动子序列,PlantCARE软件分析表明,该序列具有启动子的基本元件CAAT-box和TATA-box以及多种与逆境胁迫相关的顺式调控元件。实时荧光定量PCR分析表明,CkF3H在柠条的根、茎和叶中均有表达,没有组织特异性;CkF3H的表达受低温、高盐、干旱和高温胁迫的诱导,并且在低温胁迫下,CkF3H的表达还受到光周期的影响。综上所述,研究结果表明CkF3H基因在柠条锦鸡儿适应低温、高盐、干旱和高温胁迫的过程中发挥作用。     

Oenothera mitochondrial orf454, a gene involved in cytochrome c biogenesis corresponds to orf169 and orf322 of Marchantia

We have characterized a mitochondrial gene in Oenothera, designated orf454, capable of encoding a component of the cytochrome c biogenesis system. This open reading frame is interrupted by an intron of 941 nucleotides showing high similarity to a group II intron residing in the rpl2 gene. RNA editing, which is observed at 18 cytidine positions within the orf454 reading frame, improves the similarity to protein-coding sequences in bacteria and higher plants and removes the last 16 amino acids. orf454 also shows high sequence similarity to two overlapping reading frames (orf169 and orf322) of Marchantia mitochondria. These ORFs belong to an operon-like cluster of genes in the liverwort that is not conserved in Oenothera mitochondria. However, in bacteria these reading frames are organized like the Marchantia gene cluster. It has been shown by genetical analysis in Rhodobacter capsulatus that these genes are essential for cytochrome c biogenesis. Genes of bacterial operons — ccl1 in Rhodobacter and yejR and nrfE in Escherichia coli — show high sequence similarity to the mitochondrial reading frames orf577 and orf454 of Oenothera. orf454, which we describe here, is homologous to the C-terminal region of these bacterial genes, while the previously described orf577 is homologous to the N-terminal region.