食细菌线虫对土壤微生物量和微生物群落结构的影响

线虫与微生物的相互作用研究往往是在悉生培养体系 (gnotobiotic microcosm)中进行 ,为了研究在自然或开放土壤条件下土壤线虫与微生物的相互作用 ,作者在开放盆栽体系中接种土壤食细菌线虫 (原小杆线虫 ,Protorhabditis sp) ,研究在小麦不同生育期、在有和无根系作用下食细菌线虫对土壤微生物量和微生物群落结构的影响。结果表明 :接种线虫分别使 SMBC、SMBN、SMBP提高了 2 6 .4 %、32 .9%、2 1.8% ,这种促进作用除个别无根系土和非根际土处理外 ,均达到显著性差异。根际土中的 SMBC、SMBN、SMBP>非根际土 >无根系土。从方差解释比例 v来看 ,SMBN受线虫的影响最大 (v=2 4 % )、其次是 SMBC(v=16 % )、然后是 SMBP(v=12 % ) ,线虫对 SMBC的促进作用在根际土中最突出。接种线虫对土壤细菌、真菌和放线菌的数量有明显的影响。在苗期的无根系土和根际土中 ,接种线虫显著降低了细菌的数量、特别在根际土中尤为突出 ,但在其它处理中却增加了细菌的数量。接种线虫对真菌和放线菌数量的促进作用比对细菌更为明显 ,接种线虫后真菌和放线菌数量的总平均值分别比未接种提高了 4 8.5 %和 6 8.2 % ,而细菌数量的总平均值没有变化。细菌数量与微生物量 C相关散点图表明二者相关性在根际土、非根际土和无根系土中均未     

根际效应对大豆田土壤线虫群落组成及多样性的影响

根际作为重要的环境界面是植物与环境之间物质能量交换的场所,关于根际效应的研究已成为土壤生态学的新兴热点领域,然而有关大豆根际效应对土壤动物多样性影响的研究报道并不多见。在三江平原选择连续耕作15a的大豆田,对大豆根际区与非根际区土壤线虫群落结构组成进行了对比分析。结果表明:大豆根际区土壤线虫总数、辛普森多样性指数(Dom)显著高于非根际区,根际区的物种数(S)、物种丰富度指数(SR)显著低于非根际区。说明大豆根际效应增加土壤线虫的丰度,但降低了线虫群落结构的复杂性。大豆根际区植物寄生线虫(PP)、食真菌线虫(FF)和食细菌线虫(BF)数量显著高于非根际区,而PP类群的比例在根际区却显著低于非根际区。这一研究结果表明食微线虫(FF和BF)类群在大豆根际区的比例增加更显著。食真菌与食细菌线虫数量比值(F/B)指示大豆根际区细菌生物量相对高于真菌生物量。研究结果丰富了农田土壤线虫多样性的研究内容,并为我国东北大豆田线虫病害的防治及定制相应的农业管理措施提供参考。     

CARD-FISH研究食细菌线虫对氨氧化细菌（AOB）数量的影响

土壤动物与微生物的取食与反馈之间的关系是土壤生态学研究的核心内容之一。通过接种原位的食细菌线虫和微生物群落模拟土壤真实环境,采用CARD-FISH方法来观察食细菌线虫的不同取食密度下,氨氧化细菌(ammonia oxidizing bacteria)数量的动态变化,以揭示土壤食细菌线虫对AOB数量的影响及AOB的反馈强度。结果表明:与单独接种细菌的处理(SB)相比,接种食细菌线虫显著地增加了土壤中AOB的数量,3个不同线虫接种密度处理中AOB数量表现为接种20条g-1干土的处理(SBN20)接种10条g-1干土的处理(SBN10)接种40条g-1干土的处理(SBN40)。由于过度取食,SBN40处理中AOB的数量在培养了14d后低于SB处理,且在第28天时显著低于SB处理。接种食细菌线虫显著增加了土壤中NH4+-N和NO3-N的含量,表明食细菌线虫促进了N的矿化和硝化作用。矿化作用增强使得硝化作用的底物NH4+-N显著增加可能是AOB数量显著增多的重要原因之一。     

Shifts in chemical and microbiological properties belowground of invader Ageratina adenophora along an altitudinal gradient

入侵植物紫茎泽兰根围土壤化学及微生物属性海拔变化格局 热带地区山地生态系统是外来植物入侵的重要区域,是研究外来植物扩散机制的“天然实验室”。本研究试图探明入侵植物紫茎泽兰(Ageratina adenophora)根围土壤化学(pH及土壤养分)和微生物(酶活性和细菌群落)特性沿海拔梯度的变化规律。本研究以哀牢山(1400–2400 m)不同海拔梯度分布的紫茎泽兰为研究对象,采集根围土,测定土壤有机碳及养分含量,以及植物根系碳和氮含量。分析与土壤有机碳、氮及磷循环的酶活性,通过计算土壤酶化学计量参数,探究微生物生长代谢利用碳、氮及磷的规律。借助高通量测序技术对16S rDNA的V4区测序,分析细菌群落结构。研究结果显示,海拔显著影响紫茎泽兰根系氮及及其根围土壤有机碳含量,且这些测量指标在海拔2000 m  出现拐点。处在低海拔,入侵植物快速生长耗竭土壤中相对缺乏的磷,磷素是限制微生物生长的重要养分元素;而在高海拔,微生物需要投入更多的能量降解有机质获取碳,导致微生物生长的碳限制。细菌群落β多样性及pH  是决定不同海拔酶化学计量参数差异的重要因子;变形菌门和酸杆菌门是决定微生物养分利用状况的主要细菌门类。这些结果阐明了不同海拔梯度上紫茎泽兰根围土壤微生物的养分利用规律,有助于认识入侵植物沿海拔扩散机制。     

基于根际与凋落物际评价转Bt水稻对土壤线虫群落的影响

转基因作物在商业化推广前,有必要评价其对非靶标土壤生物的生态影响。根系和凋落物与土壤的界面是代表植物直接影响土壤的两个典型活性微域,即根际和凋落物际。基于室内盆栽实验构建水稻根际和凋落物际,比较了这两个高活性微域中转Bt水稻克螟稻(KMD)与亲本水稻秀水11(XSD)对土壤可利用资源、微生物学性质和线虫群落的影响。结果表明:转Bt水稻对土壤性质的影响依赖于水稻生育期和微域的变化。与XSD相比,KMD在苗期和拔节期显著提高了凋落物际土壤可溶性有机氮含量(P0.05);在苗期显著降低了凋落物际土壤铵态氮含量,但在成熟期显著提高了凋落物际与交互微域土壤的铵态氮含量(P0.05)。与亲本水稻相比,转Bt水稻分别在苗期和成熟期显著提高了凋落物际土壤微生物生物量碳和活性,而在拔节期和成熟期显著降低了根际土壤微生物生物量氮含量(P0.05)。微域间的交互作用显著影响土壤微生物生物量、可溶性有机碳和氮、线虫总数和各食性线虫的数量(P0.05)。转Bt水稻总体上降低了土壤线虫总数,尤其在苗期和拔节期的凋落物际土壤中达到显著水平。重复测量方差分析表明转Bt水稻显著影响土壤食细菌(P0.01)和食真菌(P0.05)线虫数量,及线虫群落的通道指数和富集指数。水稻收获后KMD秸秆的Bt蛋白含量显著高于亲本,全部KMD处理的土壤样品中Bt蛋白含量无显著变化,因而转Bt水稻对土壤生物学性质的影响可能并非来源于Bt蛋白的作用,而更可能来自于水稻生长性状和凋落物性质的差异。     

高通量测序分析冻融期碳源输入方式对土壤线虫群落的影响

植物碳源输入途径变化对土壤生物群落的影响研究是目前学术界关注的热点问题。为探究温带森林生态系统碳源输入方式对土壤线虫群落的影响,通过Illumina MiSeq技术分析了不同碳源输入方式下土壤线虫群落组成和多样性的变化。研究结果显示:所有处理(凋落物和根系同时输入;仅根系输入;仅凋落物输入;无碳源输入)中共发现土壤线虫68属,其中食细菌线虫的相对丰度最大;各碳源输入方式中仅凋落物输入处理对线虫群落组成的影响最为明显,表现为:与凋落物和根系同时输入处理相比,仅凋落物输入处理中食细菌线虫的相对丰度明显增加,食真菌线虫的相对丰度显著降低以及捕食杂食线虫的相对丰度显著增加。从线虫群落的多样性指数角度看,无碳源输入处理中土壤线虫群落的多样性指数(H'')下降,优势度指数(Dom)增高;仅凋落物输入处理中均匀度指数(J)最高。从线虫群落的生态指数角度看,仅凋落物输入处理的线虫群落成熟度指数(MI)最高;各碳源输入处理的分解过程均以细菌分解通道为主。研究表明,土壤线虫群落受到碳源输入变化的调节,仅凋落物输入处理比仅根系输入处理对土壤线虫群落的影响更大。无碳源输入处理的物种多样性明显下降,仅凋落物输入处理的土壤食物网更加稳定。研究结果丰富了森林土壤线虫多样性的研究内容,并为高通量测序技术在土壤线虫方面的研究提供方法和数据的支持。     

甲基溴土壤消毒替代技术条件下的线虫生态学研究

为评价和筛选几种甲基溴替代技术及其对土壤线虫群落的影响 ,2 0 0 1年 6月～ 2 0 0 2年 3月对 5种土壤消毒处理的线虫数量和群落结构及微生物量动态作了测定和分析。试验共分离到土壤线虫 4个目 14个科属 ,包括小杆目 (Rhabditida)、垫刃目(Tylenchida)、矛线目 (Dorylaimida)、单宫目 (Monhysterida)。小杆目线虫占总数的 88.7% ,表明食细菌的小杆目线虫是该温室土壤线虫群落的优势类群。分析表明甲基溴 VIF、威百亩、威百亩 VIF三种措施的消毒效果达到了甲基溴处理的水平 ,可作为甲基溴土壤消毒替代技术 ,而太阳能 BCA处理未达到甲基溴消毒的效果。研究显示同一处理的线虫数量在两个番茄品种(AF179和毛粉 80 2 )间不存在显著差异 ,即表明这两种番茄品种不是影响土壤线虫数量动态的主要因素。对消毒处理后土壤线虫各营养类群在群落中的比例进行分析 ,发现与对照相比 ,化学消毒提高了线虫群落中优势类群 (即食细菌线虫 )的比例 ,而使弱势类群的比例下降 ,这表明土壤线虫的弱势类群对化学熏蒸剂更加敏感。两番茄品种小区中土壤食细菌、食真菌线虫数量与微生物量碳之间呈显著正相关关系 ,表明微生物生物量的消长受土壤消毒措施的影响 ,同时也证实了上述两营养类群线虫与土壤微生物间的食物依赖关系。     

食微线虫对植物生长及土壤养分循环的影响

近二十多年来, 土壤动物的生态功能受到广泛重视。越来越多的证据表明, 土壤动物和微生物间的相互作用对土壤生态系统过程和植物生长起着重要的调节作用。本文综述了食细菌线虫和食真菌线虫对土壤微生物、土壤氮矿化和植物生长的影响。大量研究发现, 食细菌线虫和食真菌线虫都有助于土壤氮素等养分矿化, 从而促进植物生长。这种作用主要是线虫通过取食活动加速微生物周转, 并通过代谢分泌和释放微生物所固持的养分而实现的。但这种作用会因不同的线虫、微生物和植物的种类以及土壤基质的C/N营养状况而异, 此外还受线虫的营养类群及其与其他土壤动物之间复杂关系的影响。今后应该加强以下几方面的研究: (1)深入研究线虫、微生物和植物之间相互作用的机制; (2) 增加控制实验系统的复杂性, 研究线虫不同功能群之间及其与其他土壤动物之间的关系; (3)加强长期实验和观察, 在较长的时间尺度上了解线虫的生态功能; (4)加强对不同生态系统的研究, 在更大的空间尺度上综合了解土壤线虫的生态功能; (5)在全球气候变化的背景下了解土壤线虫的响应, 并预测土壤线虫对全球变化的反馈。     

三种土壤条件下紫茎泽兰根际的酶活性及细菌群落状况

紫茎泽兰被列为我国危害最严重的外侵植物,为探索其侵入机制,以四川省凉山州的3种主要土壤?红壤、黄壤和紫色土为研究对象,比较了根际和非根际土壤(距离根系约20 cm)的酶活性及细菌群落。结果表明,尽管土壤类型不同,根际酶活性(过氧化氢酶、酸性磷酸酶、脲酶和蔗糖酶)及微生物量碳氮显著高于非根际,说明紫茎泽兰的根系生命活动促进根际微生物生长繁殖,数量增加,活性增强,有益于土壤养分供应,促进紫茎泽兰生长,提高生存竞争优势。在不同类型的土壤中,紫茎泽兰根际细菌的分类单元数和主成分方差比非根际降低或无显著变化,说明紫茎泽兰对土壤细菌群落的影响因土壤而异。3种土壤的优势菌株种类差异极大,根际20种优势细菌中仅链霉菌1(Streptomyces1)为共有菌株,非根际仅有绿弯菌(Chloroflexi KD4-96)为共有菌株,说明紫茎泽兰能在细菌群落不同的土壤上生长,具有极强的适应性。但是,3种土壤的优势细菌均为放线菌门、变形菌门和拟杆菌门,合计占细菌总量的60.69%—78.75%;就同一种土壤而言,根际20种优势细菌中有8—11株与非根际相同。因此,土壤类型是决定细菌群落的主要因素,但因紫茎泽兰入侵而发生一定程度的变化。     

不同水分管理方式对稻田土壤生物学特性的影响

在下辽河平原单季稻地区研究了常规浅湿干灌溉 (CK)、浅湿干灌溉薄膜阻渗 (IC)、湿润灌溉薄膜阻渗 (MC)、淹水灌溉薄膜阻渗 (FC) 4种不同水分管理方式下土壤线虫及土壤微生物量的动态变化。结果表明 ,耙耕前 ,CK、FC处理食细菌线虫数量显著高于MC、IC处理 ;薄膜阻渗在黄熟期显著降低了土壤食细菌线虫的数量 ,在耙耕前显著降低了食真菌线虫数量。潮棕壤稻田食真菌线虫与食细菌线虫相比数量较低。在耙耕前不同水分管理方式下土壤微生物量C显著低于对照。不同水分管理方式在水稻分蘖期、抽穗期对食细菌线虫数量、食真菌线虫数量、微生物量C和微生物量N没有影响。土壤食细菌线虫、食真菌线虫数量与土壤微生物量C、N没有达到显著相关。     

Plant-Parasitic Nematodes of South Viet Nam

Between 1974 and 1978, 2,842 identifications of plant-parasitic nematodes were made from more than 1,700 soil and plant samples collected in eight provinces of South Viet Nam. Species in nine genera—Helicotylenchus, Criconemoides, Meloidogyne, Pratylenchus, Tylenchorhynchus, Hoplolaimus, Hirschmanniella, Xiphinema, and Rotylenchulus—comprised 96.1% of the identifications; the remaining 3.9% were species of 11 genera. Fourteen genera were associated with rice which was grown on about 2,500,000 ha in 1970. Of these, Ditylenchus, Hirschmanniella, and Meloidogyne were most important. Ditylenchus angustus caused severe damage to about 50,000 ha of flooded rice in the Mekong Delta in 1976. Hirschmanniella spp. were found in all samples examined from flooded rice fields. Meloidogyne spp. were common in rice seedbeds, upland rice, and rice not kept flooded continuously. Meloidogyne and Pratylenchus spp. were found in roots of 22 of the 32 crop plants sampled. Little or no attempt was made in South Viet Nam to control nematodes.     

Study of types of some species of "Filaria" (Nematoda) parasites of small mammals described by Von Linstow and Molin

Parasitic nematodes from the Berlin (ZMB) and Vienna (NMW) Museum collections referred to the genus Filaria Mueller, 1787 by von Linstow or Molin were studied. Three samples were in good condition and the specimens redescribed. Litomosa hepatica (von Linstow, 1897) n. comb., sample ZMB Vermes Entozoa 3368, from the megachiropteran Pteropus neohibernicus, Bismarck Archipelago, resembles L. maki Tibayrenc, Bain & Ramanchandran, 1979, from Pteropus vampyrus, in Malaysia, but the buccal capsule differs. Both species display particular morphological characters which differ from species of Litomosa parasitic in microchiropterans. The remaining material originates from Brazil. The spicule morphology of Litomosoides circularis (von Linstow, 1899) Chandler, 1931, sample ZMB Vermes Entozoa 1059 from Hesperomys spec. (= Holochilus brasiliensis), Porto Alegre, confirms that it belongs to the sigmodontis group; the microfilaria presents characters of the genus Litomosoides, e.g. body attenuated at both extremities and salient cephalic hook. Taxonomic discussions by others confirm that species of Litomosoides belonging to the sigmodontis group and described subsequently are distinct from L. circularis. Litomosoides serpicula (Molin, 1858) Guerrero, Martin, Gardner & Bain, 2002, is redescribed, sample NMW 6323 from the bat Phyllostoma spiculatum (= Sturnira lilium), Ypanema. It is very close to L. brasiliensis Almeida, 1936, type host Moytis sp., but distinguished by a single ring in the buccal capsule, rather than two, supporting previous conclusions that the taxon L. brasiliensis, as generally regarded, may represent a complex of species. Samples NMW 6322 and NMW 6324, from other bats and also identified by Molin (1858) as Filaria serpicula, contain unidentifiable fragments of Litomosoides incertae sedis. Filaria hyalina von Linstow, 1890, sample ZMB Vermes Entozoa Q 3905 from Sorer vulgaris (= Sorex araneus), is incertae sedis because it contains two unidentifiable posterior parts of male, which might be an acuarid, Stammerinema sp. Filaria vesperuginis von Linstow, 1885, sample ZMB Vermes Entozoa Q 3929, from the bat Vesperugo serotinus (= Eptesicus serotinus), contains encysted nematode larvae and is a nomen dubium.     

Multilocus phylogenetic analysis of the genus Aeromonas

A broad multilocus phylogenetic analysis (MLPA) of the representative diversity of a genus offers the opportunity to incorporate concatenated inter-species phylogenies into bacterial systematics. Recent analyses based on single housekeeping genes have provided coherent phylogenies of Aeromonas. However, to date, a multi-gene phylogenetic analysis has never been tackled. In the present study, the intra- and inter-species phylogenetic relationships of 115 strains representing all Aeromonas species described to date were investigated by MLPA. The study included the independent analysis of seven single gene fragments (gyrB, rpoD, recA, dnaJ, gyrA, dnaX, and atpD), and the tree resulting from the concatenated 4705 bp sequence. The phylogenies obtained were consistent with each other, and clustering agreed with the Aeromonas taxonomy recognized to date. The highest clustering robustness was found for the concatenated tree (i.e. all Aeromonas species split into 100% bootstrap clusters). Both possible chronometric distortions and poor resolution encountered when using single-gene analysis were buffered in the concatenated MLPA tree. However, reliable phylogenetic species delineation required an MLPA including several “bona fide” strains representing all described species.     

Fate map of the distal portion of Drosophila proboscis as inferred from the expression and mutations of basic patterning genes

The late-third-instar labial disc is comprised of two disc-proper cell layers, one representing mainly the ventral half of the anterior compartment (L-layer) and the other, the dorsal half of the anterior compartment and most, if not all, of the posterior compartment (M-layer). In the L-layer, Distal-less represses homothorax whereas no Distal-less-dependent homothorax repression occurs in the M-layer where Distal-less is coexpressed with homothorax. In wild-type labial discs, clawless, one of the two homeobox genes expressed in distal cells receiving maximum (Decapentaplegic+Wingless) signaling activity in leg and antennal discs, is specifically repressed by proboscipedia. A fate map, inferred from data on basic patterning gene expression in larval and pupal stages and mutant phenotypes, indicates the inner surface of the labial palpus, which includes the pseudotracheal region, to be a derivative of the distal portion of the M-layer expressing wingless, patched, Distal-less and homothorax. The outer surface of the labial palpus with more than 30 taste bristles derives from an L-layer area consisting of dorsal portions of the anterior and posterior compartments, each expressing Distal-less. Our analysis also indicates that, in adults and pupae, the anterior-posterior boundary, dividing roughly equally the outer surface of the distiproboscis, runs along the outer circumference of the inner surface of distiproboscis.     

Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex

The present generic concept of Phoma is broadly defined, with nine sections being recognised based on morphological characters. Teleomorph states of Phoma have been described in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma anamorphs represent a polyphyletic group. In an attempt to delineate generic boundaries, representative strains of the various Phoma sections and allied coelomycetous genera were included for study. Sequence data of the 18S nrDNA (SSU) and the 28S nrDNA (LSU) regions of 18 Phoma strains included were compared with those of representative strains of 39 allied anamorph genera, including Ascochyta, Coniothyrium, Deuterophoma, Microsphaeropsis, Pleurophoma, Pyrenochaeta, and 11 teleomorph genera. The type species of the Phoma sections Phoma, Phyllostictoides, Sclerophomella, Macrospora and Peyronellaea grouped in a subclade in the Pleosporales with the type species of Ascochyta and Microsphaeropsis. The new family Didymellaceae is proposed to accommodate these Phoma sections and related anamorph genera. The present study demonstrated that Phoma radicina, the type species of Phoma sect. Paraphoma and Phoma heteromorphospora, the type species of Phoma sect. Heterospora can be assigned to the Phaeosphaeriaceae and Leptosphaeriaceae respectively.     

Microbial transformation of zaluzanin-D

Microbial transformation of zaluzanin-D using different fungi gave 11,13-dihydrozaluzanin-C, zaluzanin-C, 4,16,11,13 - tetrahydro zaluzanin-C, estafiatone, dihydroestafiatol and dihydroestafiatone.     

Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov

Phylogenetic analyses based on 16S rRNA gene sequences showed that a bacterial isolate, designated JC2678(T), represents a distinct phyletic line within the suprageneric monophyletic clade containing the genera Nonlabens, Persicivirga, Stenothermobacter and Sandarakinotalea. The polyphasic data presented in this study demonstrated that the members belonging to the Nonlabens-like clade overall constitute a single genus. Therefore, it is proposed to transfer the members of genera Persicivirga O'Sullivan et al. 2006, Stenothermobacter Lau et al. 2006 and Sandarakinotalea Khan et al. 2006 to the genus Nonlabens Lau et al. 2005. Thus, P. dokdonensis (Yoon et al. 2006) Nedashkovskaya et al. 2009, P. ulvanivorans Barbeyron et al. 2010, P. xylanidelens O'Sullivan et al. 2006, Sandarakinotalea sediminis Khan et al. 2006 and Stenothermobacter spongiae Lau et al. 2006 should be transferred to Nonlabens dokdonensis comb. nov., Nonlabens ulvanivorans comb. nov., Nonlabens xylanidelens comb. nov., Nonlabens sediminis comb. nov. and Nonlabens spongiae comb. nov., respectively. In addition, strain JC2678(T) (=KACC 14155(T)=JCM 17109(T)) is proposed to constitute a novel species belonging to the genus Nonlabens with the name of Nonlabens agnitus sp. nov.