Faunistic data and biogeography of terrestrial isopods from Tunisian wetlands

In Tunisia, while wetlands are considered as remarkable habitats for their faunal and floral diversity, few studies on the biogeography and the diversity of terrestrial isopods were performed. To fill this gap, we carried out a field study in the supralittoral zone of 146 Tunisian wetlands belonging to eight types (lagoon, river, lake, sebkha, dam, hill reservoir, beach and chott) and to five bioclimatic zones (humid, subhumid, semi‐arid, arid and Saharan). Field work was carried out in spring 2010. Terrestrial isopods were collected in the morning by hand search each time with the same sampling effort. During the study, 22 species of terrestrial isopods belonging to nine families were collected. Porcellio variabilis, Porcellio laevis, Chaetophiloscia elongata and Armadillidium pelagicum are the most common species identified. From the northern to the southern regions, a gradual decrease in species richness has been shown. The identified species belonged to different biogeographical categories: Mediterranean, Mediterranean‐Atlantic, North Africa with circum‐Sicilian islands, semi‐arid and Saharan species. Some of these species are endemic to Tunisia (Porcellio dominici) or to North Africa (Armadillidium sulcatum, Armadillidium tunisiense, Porcellio marginenotatus and P. variabilis). Terrestrial isopod species differ according to wetland type and bioclimatic zone.     

Intra‐annual variation of the spatiotemporal distribution and abundance of Talitridae and Oniscidea (Crustacea,Peracarida) at Bizerte Lagoon (northern Tunisia)

During 1 year from spring 2007 to winter 2008, we conducted four seasonal samplings along a transect in the supralittoral zone of Bizerte Lagoon at Menzel Jmil (Tunisia) to study the intra‐annual variation of Peracarida diversity, Talitridae and Oniscidea. For each season, one transect was studied and quadrates were placed successively from the shoreline to the road backing the shore. Talitridae and Oniscidea were the most abundant taxa in our samples reaching highest densities in summer, when fourteen species were found. The minimum and maximum values of species richness of Talitridae were observed in winter (four species) and summer (eight species), respectively, while for Oniscidea, species richness ranged from one species in winter and five species in spring. Both Talitridae and Oniscidea exhibited intra‐annual variation in their spatial distribution; in that, they moved away from the shoreline in winter and were found near the waterline in the other seasons. ANOVA test shows a high significant correlation between both Talitridae with Suaeda maritima and Oniscidea with the plants S. maritima,Salicornia arabica and Obione portulacoides.     

Diversity of terrestrial isopod species in the Chambi National Park (Kasserine,Tunisia)

Diversity of terrestrial isopods across habitats and altitude was studied in the National Park of Chambi (central Tunisia). Samples were collected over five years in seven sites (S1–S7), within an altitudinal range from 750 to 1,500 m a.s.l. Twelve species belonging to five families were identified, with one endemic species (Porcellio djahizi) to this area, and three species were present in all sites (P. djahizi, Leptotrichus panzerii and Armadillidium tunisiense). Agnaridae represented by Hemilepistus reaumurii species was the most abundant family (58.77%) and found in only one site. Our results showed differences in species richness between sites. Indeed, S2 and S3 (900 and 1,050 m) showed the highest species richness with 11 species each. This result validates the hypothesis of mid‐elevational richness peak and contradicts the theory of large sampling regimes in determining the relationship between species richness and elevation. Terrestrial isopod species richness in the Chambi Mountain tends to decrease with altitude: 11 species in S2 and S3 to four species in S7. The highest Shannon–Wiener diversity index value was observed in S2 (H′ = 3.21 bits). Canonical correspondence analysis revealed that H. reaumurii was positively correlated with temperature whereas A. tunisiense and P. djahizi were the only species positively correlated with altitude.     

Terrestrial isopod diversity in the wadi Moula‐Bouterfess catchment area (Kroumirie,north‐west of Tunisia)

We assessed the diversity of terrestrial isopods according to habitat and altitude in the wadi of Moula‐Bouterfess catchment area. The most representative habitat types for the area were selected within altitudinal range from 6 to 550 m a.s.l. In total nine sites were sampled: four with maquis and garrigue vegetation, one at a meadow and four sites with forest vegetation. In each sampled habitat, individuals were collected by hand in April 2005 using 30 replicates of a quadrate of 0.5 × 0.5 m. During the study, 582 individuals belonging to 11 terrestrial isopod species from five families were collected. Among these, three species were newly mentioned in Tunisia. The genus Armadillidium was the most abundant genus (60% of the total number of collected specimens) and P. variabilis was the most common species as it was sampled in eight of the nine studied habitats. Terrestrial isopod community structure differs among the nine sampling habitats. Abundance and species richness values are low in the different studied habitats. The Shannon–Wiener H′ varied from 0.67 to 2.06. The Canonical Correspondence Analysis (CCA) applied to our data showed that the majority of terrestrial isopod species seem to be more sensitive to vegetal associations than to altitude. No relationship was found between species richness/diversity (Shannon–Wiener index H’) and altitude. The studied sites were separated into open and closed areas based on the Bray–Curtis index for similarity.     

A sampling optimization analysis of soil‐bugs diversity (Crustacea,Isopoda, Oniscidea)

Biological diversity analysis is among the most informative approaches to describe communities and regional species compositions. Soil ecosystems include large numbers of invertebrates, among which soil bugs (Crustacea, Isopoda, Oniscidea) play significant ecological roles. The aim of this study was to provide advices to optimize the sampling effort, to efficiently monitor the diversity of this taxon, to analyze its seasonal patterns of species composition, and ultimately to understand better the coexistence of so many species over a relatively small area. Terrestrial isopods were collected at the Natural Reserve “Saline di Trapani e Paceco” (Italy), using pitfall traps monthly monitored over 2 years. We analyzed parameters of α‐ and β‐diversity and calculated a number of indexes and measures to disentangle diversity patterns. We also used various approaches to analyze changes in biodiversity over time, such as distributions of species abundances and accumulation and rarefaction curves. As concerns species richness and total abundance of individuals, spring resulted the best season to monitor Isopoda, to reduce sampling efforts, and to save resources without losing information, while in both years abundances were maximum between summer and autumn. This suggests that evaluations of β‐diversity are maximized if samples are first collected during the spring and then between summer and autumn. Sampling during these coupled seasons allows to collect a number of species close to the γ‐diversity (24 species) of the area. Finally, our results show that seasonal shifts in community composition (i.e., dynamic fluctuations in species abundances during the four seasons) may minimize competitive interactions, contribute to stabilize total abundances, and allow the coexistence of phylogenetically close species within the ecosystem.     

Variation between freshwater and terrestrial fungal communities on decaying bamboo culms

Fungal communities on decaying culms of a bamboo host (Phyllostachys bambusoides) from freshwater and adjacent terrestrial habitats were identified. Collections were made at Xiao Bai Long Mountain, Yiliang, Yunnan, China in the winter and summer. In each collection, 100 similar-sized bamboo culms were collected, comprising 50 submerged samples from a stream and 50 terrestrial samples from adjacent riparian vegetation. A total of 82 fungal taxa were recorded from the samples, including 30 ascomycetes and 52 anamorphic fungi. The frequency of occurrence of these fungi were recorded and the Shannon–Weiner indices (H′) were applied to evaluate fungal diversity. The results showed that variation of the fungal diversity between the summer and winter collections was insignificant (0.2<p<0.5). Fungal diversity on submerged bamboo however, was significantly higher than that on terrestrial bamboo (p<0.001). Further findings were that: (1) some commonly recorded freshwater and terrestrial taxa were found in both habitats, but overall there were only 15 overlapping species between the two habitats; (2) the dominant species in each habitat were considerably different, and (3) only a few fungi were dominant, while most species were rare, being recorded only once or twice. Factors responsible for the distribution patterns and variations in composition of the fungal communities are discussed.     

Genetic diversity of Colletotrichum gloeosporioides species complex associated with Citrus wither‐tip of twigs in Tunisia using microsatellite markers

Anthracnose Citrus disease has been associated with several symptoms worldwide and it is recently compromising Citrus production in the Mediterranean area. Four species complexes are mainly involved: Colletotrichum boninense, C. acutatum, C. gloeosporioides and C. truncatum. In this study, we investigated the genetic diversity of Colletotrichum spp. in Tunisia associated with wither‐tip of twigs on Citrus. Specific primers ITS4‐CgInt allowed the identification of C. gloeosporioides species complex in all the 54 isolates, sampled from three regions and four Citrus species. Overall, our genotypic analysis using 10 SSR markers showed a moderate diversity level in Tunisian C. gloeosporioides population and highlighted that C. gloeosporioides reproduce mainly clonally. In addition, heterothallic isolates were present in our population, suggesting that the pathogen population may undergo parasexual recombinations. The highest genetic diversity in C. gloeosporioides was recorded in Nabeul and on orange, which likely constitutes the area and the host of origin for the Citrus anthracnose disease in Tunisia. In addition, no population subdivision was detected at the geographic, host species or cultivars’ origin levels. However, our study identified two genetic subpopulations and indicated a rapid C. gloeosporioides population change at temporal scale that should be further examined over several consecutive growing seasons in order to understand its population dynamics.     

Essential Oil and Bioactive Compounds Variation in Myrtle (Myrtus communis L.) as Affected by Seasonal Variation and Salt Stress

The effect of different NaCl concentrations (control, 2, 4 and 6 dS/m) and three harvesting times in different seasons including spring (9 April), summer (5 July), and fall (23 September) was evaluated on essential oil (EO) yield, composition, phenolic, flavonoid content, and antioxidant activity of myrtle. Essential oil yield ranged from 0.2% in control and fall to 1.6% in moderate salinity (4 dS/m) and spring season. The main constituents obtained from gas chromatography/mass spectrometry analysis were α‐pinene, 1,8‐cineole, limonene, linalool, α‐terpineol, and linalyl acetate in which α‐pinene ranged from 11.70% in moderate and fall to 30.99% in low salinity (2 dS/m) and spring, while 1,8‐cineole varied from 7.42% in high salinity (6 dS/m) and summer to 15.45% in low salinity and spring, respectively. Salt stress also resulted in an increase in total phenolic, flavonoid content, and antioxidant activity. The highest antioxidant activity based on DPPH radical scavenging activity, reducing power (FTC) and β‐carotene/linoleic acid model systems was found in plants harvested in spring and summer in high stress condition. The lowest IC₅₀ values obtained in 6 dS/m in spring (375.23 μg/ml) followed by summer (249.41 μg/ml) and fall (618.38 μg/ml). Eight major phenolic and flavonoid compounds were determined in three harvesting times using high performance liquid chromatography analysis. In overall, late harvesting time of myrtle in fall can lead to reduce the most of major EO components, while it can improve the amount of phenolic acids.     

Impact of abiotic factors on some biological indices of Cyprinus carpio (L., 1758) in Ghrib dam lake, (Algeria)

This study was conducted with a sample of 733 Cyprinus carpio collected between May 2013 and February 2016 from the ecosystem lake in the Ghrib dam which is eutrophic. Cyprinus carpio in this dam is characterized by a single fractional spawning that begins in the spring and ends in the late summer. The distributions of the viscerosomatic and gonadosomatic indices decrease between the spring and summer seasons. These periods correspond to the spawning period and the biological break of this species. They progressively increase between autumn and winter when the biological activity of the species returns. The hepatosomatic index progressively decreases between the spring and the summer when the hepatic reserves are used for reproduction. The repletion index shows that the trophic activity of C. carpio is intense in the spring. The condition factor varies between 1.1 and 1.35. The evolution of the biological indices of both sexes is well stressed in well‐defined periods according to the seasons. The values are weak for males and high for females. The redundancy analysis allows the characterization of the influence of the physico‐chemical parameters of the dam water, especially the role of the nutritious elements, in the biological seasonal cycle of C. carpio.     

Growth establishment and phenology of four woody Saharan species

Henophyton deserti, Calligonum polygonoides, Ephedra alata and Anthyllis henoniana may be suitable Saharan species for the rehabilitation of degraded lands. In this context, the phenology, excavation of root systems and seedling establishment of these species were investigated in the southern Tunisia. Our data suggest that phenological differences between the studied species may depend on the rooting depth. The mean seedling emergence rate was 73% in H. deserti, 66% in A. henoniana, 60% in C. polygonoides and 50% in E. alata. Statistical analyses of seedling establishment showed a highly significant difference among the four species in both seasons (F = 1595.15, P < 0.0001), species (F = 781.57, P < 0.0001) and species/season interaction (F = 61.84, P < 0.0001). After 3 years, seedling mortality ranged from 73% to 89%. Seedling mortality reached a maximum in the summer of the first year of study (P < 0.001). This study provided further understanding of the ecological tolerance, adaptive strategy and the low density of these species in nature. Henophyton deserti appears to be better adapted to the harsh desert environment. These findings explain the very high density observed in the Sahara compared with other studied species. This species has therefore proven to be an excellent candidate for the ecological restoration of degraded desert rangelands and can be introduced successfully in to rehabilitation programmes.     

Annual reproductive cycle,spawning periodicity and sexual maturity of blue runner Caranx crysos (Pisces,Carangidae) from the Gulf of Gabes (Tunisia,Eastern Mediterranean)

From June 2004 to May 2006, the reproductive biology of the blue runner Caranx crysos was studied in the Gulf of Gabes (Southern Tunisia). Of 1668 individuals examined, 777 were females (46.6%) and 891 were males (53.4%). The sex ratio significantly deviated in favour of males (♀:♂ = 0.87 : 1). The difference in the numbers of females and males was significant among size‐classes. However, there was no significant difference between sexes over months and seasons. Monthly changes in the Gonado‐Somatic Index (GSI) showed a rapid increase during summer to very high levels in July (3.51% for males and 2.55% for females) and August (3.47% for males and 2.59% for females) before declining sharply in September (0.58% for females and 0.38% for males). The gametogenesis activity began with a pre‐maturation phase, from 20 May to the first 10 days of July, followed by a pre‐spawning phase, from 20 July to 20 August. From the last 10 days of August to 20 September the gonads were in the ripe and spawning stages. From the end of September to early May, gonads were in the post‐spawning and resting stages. The size at which 50% of the population reached sexual maturity was significantly different in males and females: males attained sexual maturity at fork length FL₅₀ = 210.20, whereas females attained maturity at FL₅₀ = 222.3 mm. Age at maturity was 2.4 years for males and 2.8 years for females.     

Zooplankton allochthony is spatially heterogeneous in a boreal lake

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Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

Noninvasive genetic sampling, or noninvasive DNA sampling (NDS), can be an effective monitoring approach for elusive, wide‐ranging species at low densities. However, few studies have attempted to maximize sampling efficiency. We present a model for combining sample accumulation and DNA degradation to identify the most efficient (i.e. minimal cost per successful sample) NDS temporal design for capture–recapture analyses. We use scat accumulation and faecal DNA degradation rates for two sympatric carnivores, kit fox (Vulpes macrotis) and coyote (Canis latrans) across two seasons (summer and winter) in Utah, USA, to demonstrate implementation of this approach. We estimated scat accumulation rates by clearing and surveying transects for scats. We evaluated mitochondrial (mtDNA) and nuclear (nDNA) DNA amplification success for faecal DNA samples under natural field conditions for 20 fresh scats/species/season from <1–112 days. Mean accumulation rates were nearly three times greater for coyotes (0.076 scats/km/day) than foxes (0.029 scats/km/day) across seasons. Across species and seasons, mtDNA amplification success was ≥95% through day 21. Fox nDNA amplification success was ≥70% through day 21 across seasons. Coyote nDNA success was ≥70% through day 21 in winter, but declined to <50% by day 7 in summer. We identified a common temporal sampling frame of approximately 14 days that allowed species to be monitored simultaneously, further reducing time, survey effort and costs. Our results suggest that when conducting repeated surveys for capture–recapture analyses, overall cost‐efficiency for NDS may be improved with a temporal design that balances field and laboratory costs along with deposition and degradation rates.     

Diversity of terrestrial isopods in the northern Tunisian wetlands

To evaluate the influence of wetland types on the distribution of terrestrial isopods, species richness, relative abundance and diversity indices were studied in the supralittoral zone of 95 wetlands in the north‐western of Tunisian dorsal, belonging to six types: lagoon, hill reservoir, river, dam, lake and sebkha. We tested the following hypothesis: (i) is isopod diversity influenced by wetland types? (ii) is isopod diversity influenced by bioclimatic zones? and (iii) what are the environmental factors influencing isopod distribution? A total of 3255 individuals belonging to twenty species of terrestrial isopods were captured. Species richness differs significantly between wetland types. A highly significant positive relationship between species richness and both humidity and altitudinal gradient was described. The dendrogram of similarities showed a divergence of the lagoons compared to the remaining wetland types.     

Clear,crashing, turbid and back – long‐term changes in macrophyte assemblages in a shallow lake

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Composition of a molluscan assemblage associated with macrophytes in Menzel Jemil (Bizerte lagoon,SW Mediterranean Sea)

The molluscan species composition and diversity associated with macrophytes was studied throughout 1 year at Menzel Jemil station (Bizerte lagoon, north‐west of Tunisia). A total of 7,539 individuals belonging to 13 species were collected. The molluscan assemblage was mainly composed of gastropods (98.12%, nine species), followed by bivalves (1.88%, four species). Hydrobia acuta ranked first with 49.97% of total abundance, followed by Bittium reticulatum (17.97%), Tritia mutabilis (11.38%), Haminoea navicula (8.98%), Phorcus articulatus (5.17%) and Cerithium vulgatum (3.94%). The large number of juvenile molluscs collected confirms the importance of macroalgae and seagrass for mollusc recruitment. Significant temporal variations of species richness, density and diversity indices of the mollusc assemblage have been observed during the year. Multivariate analyses applied to our data revealed significant relationships between the macrophyte composition and associated molluscan assemblage. The BIOENV analysis indicated that water temperature, phosphates concentration and macrophyte biomass were environmental variables most closely associated with the temporal variation of molluscan assemblage.     

Spatiotemporal and demographic variation in the diet of New Zealand lesser short‐tailed bats (Mystacina tuberculata)

Variation in the diet of generalist insectivores can be affected by site‐specific traits including weather, habitat, and season, as well as demographic traits such as reproductive status and age. We used molecular methods to compare diets of three distinct New Zealand populations of lesser short‐tailed bats, Mystacina tuberculata. Summer diets were compared between a southern cold‐temperate (Eglinton) and a northern population (Puroera). Winter diets were compared between Pureora and a subtropical offshore island population (Hauturu). This also permitted seasonal diet comparisons within the Pureora population. Lepidoptera and Diptera accounted for >80% of MOTUs identified from fecal matter at each site/season. The proportion of orders represented within prey and the Simpson diversity index, differed between sites and seasons within the Pureora population. For the Pureora population, the value of the Simpson diversity index was higher in summer than winter and was higher in Pureora compared to Eglinton. Summer Eglinton samples revealed that juvenile diets appeared to be more diverse than other demographic groups. Lactating females had the lowest dietary diversity during summer in Pureora. In Hauturu, we found a significant negative relationship between mean ambient temperature and prey richness. Our data suggest that M. tuberculata incorporate a narrower diversity of terrestrial insects than previously reported. This provides novel insights into foraging behavior and ecological interactions within different habitats. Our study is the first from the Southern Hemisphere to use molecular techniques to examine spatiotemporal variation in the diet of a generalist insectivore that inhabits a contiguous range with several habitat types and climates.     

Sea-land transitions in isopods: pattern of symbiont distribution in two species of intertidal isopods <Emphasis Type="Italic">Ligia pallasii</Emphasis> and <Emphasis Type="Italic">Ligia occidentalis</Emphasis> in the Eastern Pacific

Studies of microbial associations of intertidal isopods in the primitive genus Ligia (Oniscidea, Isopoda) can help our understanding of the formation of symbioses during sea-land transitions, as terrestrial Oniscidean isopods have previously been found to house symbionts in their hepatopancreas. Ligia pallasii and Ligia occidentalis co-occur in the high intertidal zone along the Eastern Pacific with a large zone of range overlap and both species showing patchy distributions. In 16S rRNA clone libraries mycoplasma-like bacteria (Firmicutes), related to symbionts described from terrestrial isopods, were the most common bacteria present in both host species. There was greater overall microbial diversity in Ligia pallasii compared with L. occidentalis. Populations of both Ligia species along an extensive area of the eastern Pacific coastline were screened for the presence of mycoplasma-like symbionts with symbiont-specific primers. Symbionts were present in all host populations from both species but not in all individuals. Phylogenetically, symbionts of intertidal isopods cluster together. Host habitat, in addition to host phylogeny appears to influence the phylogenetic relation of symbionts.     

Seasonal changes in fish catch and environmental variables in a large Tropical Lake,Volta, Ghana

Fish species assemblage and selected environmental variables were monitored in Lake Volta from September 2014 to August 2016 to determine seasonal variability in species composition, catch and environmental variables that determine the structure of the fish community. A total of 1,557 individual fish belonging to 41 species, 25 genera and 13 families were recorded. The important fish species with respect to frequency of occurrence, abundance and weight, respectively, were as follows: Chrysichthys (100%; 43.03%; 17.93%), tilapias (100%; 28.97%; 17.86%), Alestes (100%; 14.13%; 32.10%) and Bagrus (91.67%; 5.65%; 12.80%) in that order. The composition of fish species and their temporal variation in experimental catches were similar to that of commercial catches. There were no significant differences (p > 0.05) in species abundance, weight and diversity indices between the dry and wet seasons. The modal class of length frequency distribution of the dominant species in the catch, Chrysichthys, reduced from 125 mm in 2006 to 95 mm in the current study indicating overfishing. Environmental variables considered showed little variation and within optimal ranges for fish survival and did not differ significantly between seasons. Canonical Correspondence Analysis showed that environmental variables explained 43.30% of the variation in species abundance with Lake water level, nitrite‐nitrogen and total dissolved solids being the main environmental factors influencing the structure of the fish community.     

Peripheral genetic structure of Helicoverpa zea indicates asymmetrical panmixia

Seasonal climatic shifts create peripheral habitats that alternate between habitable and uninhabitable for migratory species. Such dynamic peripheral habitats are potential sites where migratory species could evolve high genetic diversity resulting from convergence of immigrants from multiple regionally distant areas. Migrant populations of Helicoverpa zea (Boddie) captured during two different seasons were assessed for genetic structure using microsatellite markers and for host plant type using stable carbon isotope analysis. Individuals (N = 568) were genotyped and divided into 13 putative populations based on collection site and time. Fixation indices (F‐statistics), analysis of molecular variance (AMOVA), and discriminant analysis of principal components (DAPC) were used to examine within and among population genetic variation. Mean number of alleles per locus was 10.25 (± 3.2 SD), and allelic richness ranged from 2.38 to 5.13 (± 3.2 SD). The observed and expected heterozygosity ranged from 0.07 to 0.48 and 0.08 to 0.62, respectively. Low F_ST (0.01 to 0.02) and high F_IS (0.08 to 0.33) values suggest captured migrants originated from breeding populations with different allele frequencies. We postulate that high genetic diversity within migrant populations and low genetic differentiation among migrant populations of H. zea are the result of asymmetrical immigration due to the high dispersal and reproductive behavior of H. zea, which may hinder the adaptation and establishment of H. zea to peripheral habitat. These findings highlight the importance of assessing peripheral population structure in relation to ecological and evolutionary dynamics of this and other highly reproductive and dispersive species.