The structure and components of European estuarine fish assemblages

This paper discusses the structure of fish assemblages using information from 17 European estuarine areas (in the British Isles, Portugal, Belgium, France, the Netherlands, Germany, Norway and Spain). Binary (presence/absence) and quantitative data for each assemblage have been used to assess the assemblage structure according to taxonomy (i.e. species identity). Following this, a total of 29 functional guilds were created in order to describe the use made of an estuarine area for each taxon encountered: feeding preferences, reproduction type, substratum preferences (for bottom dwelling fish) and position within the water column (vertical preference guild). The paper focuses on the designation and determination of the proportions of the guild members of the fish assemblage within each estuary. Ecological guilds within the assemblage include estuarine residents, marine juvenile migrants, catadromous and anadromous migrants, marine seasonal users, and freshwater and marine adventitious species. Feeding guilds include detritivores, planktonic feeders, infaunal croppers and sediment ingesters, piscivores, and active predators of mobile crustaceans. Reproduction guilds include planktonic and demersal spawners and those using brood-protection. The substratum preference indicates the proportions of sand, mud, rock and vegetation dwellers, and the vertical preference denotes benthic, demersal or pelagic species. The analysis has allowed both the estuaries to be grouped according to taxonomic and guild similarity and the characterisation of a typical European estuarine fish assemblage. Within the limits posed by differing sampling methods, times of sampling and survey rationale, there is a high similarity between estuaries. The data indicate common patterns of estuarine usage irrespective of the differences between the estuaries although such patterns cannot be interpreted fully given the incomplete knowledge of their physical and anthropogenic characteristics.     

莱州湾鱼类群落同功能种团的季节变化

利用2011年5月、8月、10月和12月底拖网调查数据,对莱州湾海域鱼类同功能种团特征及其季节变化进行了研究。全年调查共渔获鱼类49种,全部为硬骨鱼类。根据鱼类的摄食习性,调查海域鱼类可划分为浮游动物食性种团、浮游动物/底栖动物食性种团、底栖动物食性种团、底栖动物/游泳动物食性种团、游泳动物食性种团、杂食性种团和碎屑食性种团共7个同功能种团,其中底栖动物食性种团种类数最多(14种),底栖动物/游泳动物食性种团次之(12种)。碎屑食性种团生物量在全年处于第一优势地位,占32.8%;其次为浮游动物食性种团,占31.6%;再次为底栖动物/游泳动物食性种团,占25.0%。同功能种团多样性(HFD)和种类多样性(Hs)季节变化趋势相同,均在夏季达到最高值,冬季达到最低值;两者关系使用指数方程拟合效果最佳。浮游动物食性种团平均营养级为3.71、浮游动物/底栖动物食性种团为3.83、底栖动物食性种团为3.43、底栖动物/游泳动物食性种团为3.75、游泳动物食性种团为3.86、杂食性种团为3.73、碎屑食性种团为3.34。与20世纪80年代、90年代调查结果相比,目前莱州湾碎屑食性种团比例明显上升,游泳动物食性种团比例大幅下;底栖动物食性种团和游泳动物食性种团的平均营养级明显下降,碎屑食性种团平均营养级有所上升。     

Comparing the fish assemblages and food‐web structures of large floodplain rivers

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Responses of aquatic food webs to the addition of structural complexity and basal resource diversity in degraded Neotropical streams

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Lake size and fish diversity determine resource use and trophic position of a top predator in high‐latitude lakes

Prey preference of top predators and energy flow across habitat boundaries are of fundamental importance for structure and function of aquatic and terrestrial ecosystems, as they may have strong effects on production, species diversity, and food‐web stability. In lakes, littoral and pelagic food‐web compartments are typically coupled and controlled by generalist fish top predators. However, the extent and determinants of such coupling remains a topical area of ecological research and is largely unknown in oligotrophic high‐latitude lakes. We analyzed food‐web structure and resource use by a generalist top predator, the Arctic charr Salvelinus alpinus (L.), in 17 oligotrophic subarctic lakes covering a marked gradient in size (0.5–1084 km²) and fish species richness (2–13 species). We expected top predators to shift from littoral to pelagic energy sources with increasing lake size, as the availability of pelagic prey resources and the competition for littoral prey are both likely to be higher in large lakes with multispecies fish communities. We also expected top predators to occupy a higher trophic position in lakes with greater fish species richness due to potential substitution of intermediate consumers (prey fish) and increased piscivory by top predators. Based on stable carbon and nitrogen isotope analyses, the mean reliance of Arctic charr on littoral energy sources showed a significant negative relationship with lake surface area, whereas the mean trophic position of Arctic charr, reflecting the lake food‐chain length, increased with fish species richness. These results were supported by stomach contents data demonstrating a shift of Arctic charr from an invertebrate‐dominated diet to piscivory on pelagic fish. Our study highlights that, because they determine the main energy source (littoral vs. pelagic) and the trophic position of generalist top predators, ecosystem size and fish diversity are particularly important factors influencing function and structure of food webs in high‐latitude lakes.     

The influence of changes in habitat structure on the species composition of bird assemblages in the southern Kalahari

Land use management practices often change habitat structure, which in turn influence diversity and the composition of floral and faunal assemblages. In the southern Kalahari, southern Africa, heavy grazing after above‐average rainfall has lead to bush thickening, and widespread use of arboricides and/or removal of large trees for firewood has also impacted habitat structure. At sites near Kimberley, in South Africa, we investigated the effects of these changes on bird species richness and which aspects of habitat structure most influenced bird assemblage diversity and composition. We also investigated correlations between bird life history traits and habitat characteristics using RLQ analysis. Bird species richness and abundance were both explained by vertical habitat heterogeneity and density of woody species between the heights of 0–2 m, with bird species richness also explained by the density of woody species at heights above 6 m. Large trees within bush‐thickened areas dampened the effects of bush thickening on bird assemblages by enabling certain species to persist, consistent with the idea that large trees are keystone structures. Smaller insectivorous gleaners, ball‐ and cup‐nesters, birds with parts of their range extending into arid areas and birds with long‐wavelength plumage (i.e. red, orange or yellow plumage) dominated bush‐thickened habitats. Seed‐eaters, burrow‐ and ground‐nesters, bark‐foragers, birds that perch and sally, or perch and swoop to the ground, were all negatively associated with bush thickening. Cavity‐nesters, bark‐foragers, hawkers, frugivores, birds that perch and sally and species with iridescent plumage were negatively affected by the loss of large trees. Of the common species analysed, nearly 40% of species had life history traits tied to large trees; and 68% had traits negatively associated with bush thickening and removal of large trees together, suggesting that where these changes in habitat occur simultaneously, bird diversity will be strongly affected.     

Predicting the structure and diversity of young-of-the-year fish assemblages in large rivers

1. Interactions between environmental variables and 0+ fish assemblages in the upper River Garonne (France) were quantified during late August 1995.
2. The abundance and diversity of the fish assemblages in floodplain channels were modelled using Artificial Neural Network (ANN) analysis and nine variables: the abundance of the six dominant species, fish specific richness, overall abundance of 0+ fish and the Shannon index of diversity. Multiple regression analysis was also used to assess ANN performance.
3. Using 596 samples, correlation coefficients ( r adjusted) between observed and estimated values of the nine dependent parameters were all highly significant ( P < 0.01). Expected values from the tested data were significantly related to the observed values. The correlation coefficient between observed and estimated values ( r ) varied from 0.70 to 0.85.
4. The ANN provided a high quality prediction, despite the complex nature of the relationship between microhabitat composition and fish abundance.
5. Garson's algorithm was used to provide the explanatory power needed in ecology when using black-box models. Parameters contained in the models (i.e. weighting) were used to determine the relative contributions of explanatory variables and thus to ascertain the structure of fish communities.     

Habitat diversity and fish assemblages in an African river basin (Nyagui River, Zimbabwe)

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From clear lakes to murky waters – tracing the functional response of high‐latitude lake communities to concurrent ‘greening’ and ‘browning’

Climate change and the intensification of land use practices are causing widespread eutrophication of subarctic lakes. The implications of this rapid change for lake ecosystem function remain poorly understood. To assess how freshwater communities respond to such profound changes in their habitat and resource availability, we conducted a space‐for‐time analysis of food‐web structure in 30 lakes situated across a temperature‐productivity gradient equivalent to the predicted future climate of subarctic Europe (temperature +3°C, precipitation +30% and nutrient +45 μg L^?1 total phosphorus). Along this gradient, we observed an increase in the assimilation of pelagic‐derived carbon from 25 to 75% throughout primary, secondary and tertiary consumers. This shift was overwhelmingly driven by the consumption of pelagic detritus by benthic primary consumers and was not accompanied by increased pelagic foraging by higher trophic level consumers. Our data also revealed a convergence of the carbon isotope ratios of pelagic and benthic food web endmembers in the warmest, most productive lakes indicating that the incorporation of terrestrial derived carbon into aquatic food webs increases as land use intensifies. These results, reflecting changes along a gradient characteristic of the predicted future environment throughout the subarctic, indicate that climate and land use driven eutrophication and browning are radically altering the function and fuelling of aquatic food webs in this biome.     

Changes of taxonomic and trophic structure of fish assemblages along an environmental gradient in the Upper Beni watershed (Bolivia)

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Functional diversity and trait–environment relationships of stream fish assemblages in a large tropical catchment

1. The species composition of stream fish assemblages changes across the longitudinal fluvial gradient of large river basins. These changes may reflect both zonation in species distributions and environmental filtering of fish traits as stream environments change from the uplands to the lowlands of large catchments. Previous research has shown that taxonomic diversity generally increases in larger, lowland streams, and the River Continuum Concept, the River Habitat Template and other frameworks have provided expectations for what functional groups of fishes should predominate in certain stream types. However, studies addressing the functional trait composition of fish assemblages across large regions are lacking, particularly in tropical river basins. 2. We examined functional trait–environment relationships and functional diversity of stream fish assemblages in the Río Grijalva Basin in southern Mexico. Traits linked to feeding, locomotion and life history strategy were measured in fishes from streams throughout the catchment, from highland headwaters to broad, lowland streams. Relationships between functional traits and environmental variables at local and landscape scales were examined using multivariate ordination, and the convex hull volume of trait space occupied by fish assemblages was calculated as a measure of functional diversity. 3. Although there were a few exceptions, functional diversity of assemblages increased with species richness along the gradient from uplands to lowlands within the Grijalva Basin. Traits related to swimming, habitat preference and food resource use were associated with both local (e.g. substratum type, pool availability) and landscape‐scale (e.g. forest cover) environmental variables. 4. Along with taxonomic structure and diversity, the functional composition of fish assemblages changed across the longitudinal fluvial gradient of the basin. Trait–environment relationships documented in this study partially confirmed theoretical expectations and revealed patterns that may help in developing a better understanding of general functional responses of fish assemblages to environmental change.     

Observed and projected functional reorganization of riverine fish assemblages from global change

Climate and land-use/land-cover change (“global change”) are restructuring biodiversity, globally. Broadly, environmental conditions are expected to become warmer, potentially drier (particularly in arid regions), and more anthropogenically developed in the future, with spatiotemporally complex effects on ecological communities. We used functional traits to inform Chesapeake Bay Watershed fish responses to future climate and land-use scenarios (2030, 2060, and 2090). We modeled the future habitat suitability of focal species representative of key trait axes (substrate, flow, temperature, reproduction, and trophic) and used functional and phylogenetic metrics to assess variable assemblage responses across physiographic regions and habitat sizes (headwaters through large rivers). Our focal species analysis projected future habitat suitability gains for carnivorous species with preferences for warm water, pool habitats, and fine or vegetated substrates. At the assemblage level, models projected decreasing habitat suitability for cold-water, rheophilic, and lithophilic individuals but increasing suitability for carnivores in the future across all regions. Projected responses of functional and phylogenetic diversity and redundancy differed among regions. Lowland regions were projected to become less functionally and phylogenetically diverse and more redundant while upland regions (and smaller habitat sizes) were projected to become more diverse and less redundant. Next, we assessed how these model-projected assemblage changes 2005–2030 related to observed time-series trends (1999–2016). Halfway through the initial projecting period (2005–2030), we found observed trends broadly followed modeled patterns of increasing proportions of carnivorous and lithophilic individuals in lowland regions but showed opposing patterns for functional and phylogenetic metrics. Leveraging observed and predicted analyses simultaneously helps elucidate the instances and causes of discrepancies between model predictions and ongoing observed changes. Collectively, results highlight the complexity of global change impacts across broad landscapes that likely relate to differences in assemblages' intrinsic sensitivities and external exposure to stressors.     

Diversity, structure and function of fish assemblages associated with Posidonia oceanica beds in an area of the eastern Mediterranean Sea and the role of non-indigenous species

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Species richness and functional structure of fish assemblages in three freshwater habitats: effects of environmental factors and management

In this study, the inverted trophic hypothesis was tested in the freshwater fish communities of a reservoir. The distribution of fish species in three freshwater habitats in the Jurumirim Reservoir, Brazil, was examined using both species richness and the relative proportions of different trophic groups. These groups were used as a proxy for functional structure in an attempt to test the ability of these measures to assess fish diversity. Assemblage structures were first described using non-metric multidimensional scaling (NMDS). The influence of environmental conditions for multiple fish assemblage response variables (richness, total abundance and abundance per trophic group) was tested using generalised linear mixed models (GLMM). The metric typically employed to describe diversity; that is, species richness, was not related to environmental conditions. However, absolute species abundance was relatively well explained with up to 54% of the variation in the observed data accounted for. Differences in the dominance of trophic groups were most apparent in response to the presence of introduced fish species: the iliophagous and piscivorous trophic groups were positively associated, while detritivores and herbivores were negatively associated, with the alien species. This suggests that monitoring functional diversity might be more valuable than species diversity for assessing effects of disturbances and managements policies on the fish community.     

Effects of structural diversity and identity of patches of habitat on diversity of benthic assemblages

A fundamental problem in ecology, regardless of habitat or system, is understanding the relationship between habitats and assemblage of organisms. It is commonly accepted that differences in composition and surrounding landscape of habitats affect the diversity of assemblages, although there is not much empirical evidence because of difficulties of manipulating structure in many habitats. These relationships were examined experimentally, using habitats of artificial turfs that are colonized by diverse assemblages of gastropods. Each habitat was made of nine sub‐habitats, which were sampled individually to allow tests of hypotheses about the effect of type of habitat and the influence of other adjacent sub‐habitats on the colonizing assemblage. Turf habitats were deployed for 8 weeks on a rocky shore after which they were collected and the colonizing assemblages of gastropods sampled. Independently of the types of turfs combined to form different habitats, there were more species where there was more than one type of component in a habitat (i.e. structural diversity). The type of habitat (i.e. structural identity) itself had little or no influence on the colonizing assemblage. The number of species colonizing short‐sparse and short‐dense turfs was influenced by which type of habitat was adjacent. Thus, when units of one type (e.g. short‐sparse turf) were added to a patch of habitat of long‐sparse turfs, the number of species in short‐sparse turfs was greater than in patches of the same type. This also increased total number of taxa in the whole patch of habitat. These results show how diversity of gastropods colonizing heterogeneous patches of habitat is influenced not only by the number of types of sub‐habitats, but also by interactions with surrounding sub‐habitats. These findings reiterate the importance of investigating the role of structure of habitats and of their surrounding landscapes across different systems, irrespective of their size or associated assemblages of organisms.     

基于稳定同位素技术的长湖鱼类营养结构研究

本研究应用碳、氮稳定同位素技术分析了2017年秋季（10月）和2018年春季（3月）湖北省荆州长湖鱼类营养结构特征,构建了δ¹³C和δ¹⁵N稳定同位素双位图,并计算了7个相关的量化指标。结果显示：所采集的16种鱼类,δ¹³C均值范围为（-27.7±0.8）‰~（-24.8±0.1）‰,δ¹⁵N的均值范围为（11.4±0.3）‰~（16.6±0.5）‰。营养生态位分析显示,长湖鱼类以偏肉食性鱼类黄颡鱼的营养级最高（3.28±0.2）,草鱼的营养级最低（1.74±0.1）。稳定同位素的量化指标表明,长湖春季鱼类群落核心生态位空间（standard ellipse area, SEA）、生态位总空间（total area, TA）和基础食物来源（δ¹³C range, CR）均高于秋季,两个季度的营养多样性（centrifugal distance, CD）和鱼类群落的整体密度（mean nearest neighbor distance, MNND）相似,但春季的营养长度（δ¹⁵N range, NR）和鱼类群落营养生态位分布范围（standard deviation of nearest neighbor distance, SDNND）值低于秋季。说明春季长湖的生态位总空间（TA上升）和基础食物来源（CR上升）较为丰富,但因鱼类种类的食性相近,其群落的总食物链降低（NR下降）。该研究可为分析拆围后长湖鱼类群落结构特征积累基础数据,也为长湖的渔业管理策略提供依据。     

基于稳定同位素比率及营养差异的双孢蘑菇不同栽培基质的溯源分析

双孢蘑菇是世界消费量最大的食用菌之一,不同于欧美国家的麦草栽培配方,我国双孢蘑菇栽培材料主要是以水稻秸秆为主.为了降低农业秸秆废弃物的焚烧和我国双孢蘑菇产业的持续发展,需因地制宜地开发和利用各地特色农业废弃物资源作为双孢蘑菇栽培的基质.为鉴别不同材料栽培的双孢蘑菇子实体的营养和产量差异,本研究以8种不同基质配方栽培的双...     

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere

The diversity and stability of bacterial communities present in the rhizosphere heavily influence soil and plant quality and ecosystem sustainability. The goal of this study is to understand how ‘Candidatus Liberibacter asiaticus'' (known to cause Huanglongbing, HLB) influences the structure and functional potential of microbial communities associated with the citrus rhizosphere. Clone library sequencing and taxon/group-specific quantitative real-time PCR results showed that ‘Ca. L. asiaticus'' infection restructured the native microbial community associated with citrus rhizosphere. Within the bacterial community, phylum Proteobacteria with various genera typically known as successful rhizosphere colonizers were significantly greater in clone libraries from healthy samples, whereas phylum Acidobacteria, Actinobacteria and Firmicutes, typically more dominant in the bulk soil were higher in ‘Ca. L. asiaticus''-infected samples. A comprehensive functional microarray GeoChip 3.0 was used to determine the effects of ‘Ca. L. asiaticus'' infection on the functional diversity of rhizosphere microbial communities. GeoChip analysis showed that HLB disease has significant effects on various functional guilds of bacteria. Many genes involved in key ecological processes such as nitrogen cycling, carbon fixation, phosphorus utilization, metal homeostasis and resistance were significantly greater in healthy than in the ‘Ca. L. asiaticus''-infected citrus rhizosphere. Our results showed that the microbial community of the ‘Ca. L. asiaticus''-infected citrus rhizosphere has shifted away from using more easily degraded sources of carbon to the more recalcitrant forms. Overall, our study provides evidence that the change in plant physiology mediated by ‘Ca. L. asiaticus'' infection could elicit shifts in the composition and functional potential of rhizosphere microbial communities. In the long term, these fluctuations might have important implications for the productivity and sustainability of citrus-producing agro-ecosystems.     

冶金区节肢动物碳、氮稳定同位素组成及营养级关系

通过测定辽宁省葫芦岛锌厂不同生境植物和主要消费者的碳、氮稳定同位素比值,研究冶金区不同消费者碳、氮稳定同位素组成及不同消费者之间的关系.结果表明:节肢动物δ13C、δ15N值的变化范围分别为-12.61‰～-29.63‰、1.73‰～9.94‰,变化幅度较大.研究区植物以C3植物居多,导致不同群落生境动物δ13C值较低;螳螂、蜘蛛δ15N比值高于其他动物;通过营养级模型计算可知不同消费者之间的关系,蝗虫、蚱蜢等草食性动物形成第二营养级,即初级消费者;第三营养级包括蜘蛛、螳螂,为次级消费者.     

Environmental requirements of common riverine European salmonid fish species in fresh water with particular reference to physical and chemical aspects

This review attempts to assess, as quantitatively as possible, the habitat requirements in fresh water of three common and widespread European salmonid species. Namely: the trout (Salmo trutta L.), the salmon (S. salar L.) and the grayling (Thymallus thymallus L.). Requirements are considered for spawning, incubation and emergence, juveniles and smolts and for adults and spawning movements.