Birds in the matrix: the role of agriculture in avian conservation in the Taita Hills,Kenya

Agricultural conversion of tropical forests is a major driver of biodiversity loss. Slowing rates of deforestation is a conservation priority, but it is also useful to consider how species diversity is retained across the agricultural matrix. Here, we assess how bird diversity varies in relation to land use in the Taita Hills, Kenya. We used point counts to survey birds along a land‐use gradient that included primary forest, secondary vegetation, agroforest, timber plantation and cropland. We found that the agricultural matrix supports an abundant and diverse bird community with high levels of species turnover, but that forest specialists are confined predominantly to primary forest, with the matrix dominated by forest visitors. Ordination analyses showed that representation of forest specialists decreases with distance from primary forest. With the exception of forest generalists, bird abundance and diversity are lowest in timber plantations. Contrary to expectation, we found feeding guilds at similar abundances in all land‐use types. We conclude that whilst the agricultural matrix, and agroforest in particular, makes a strong contribution to observed bird diversity at the landscape scale, intact primary forest is essential for maintaining this diversity, especially amongst species of conservation concern.     

黄土塬区不同土地利用方式土壤水分消耗与补给变化特征

对黄土塬区不同土地利用方式下2012年3—10月7龄果园(挂果初期)、17龄果园(盛果期)、小麦地、玉米地土壤水文状况进行分析,结果显示,0—600 cm试验土层7龄果园土壤贮水量最高,其次为玉米地、小麦地,17龄果园最低,且不同土地利用方式下贮水量随着降水量的变化而上下波动,但其变化滞后于降水。不同土地利用方式均表现为随土壤深度增加土壤含水量变异程度减弱的特征,且其土壤剖面的水分含量变化存在季节变异。农田和7龄果园中不存在土壤干燥化现象,而17龄果园土壤剖面存在较厚的干燥化土层,其分布深度为320—600 cm。不同的土地利用方式的土壤水分的消耗和补充深度有较大差异,17龄果园消耗深度为500 cm,补充深度为200 cm;7龄果园、玉米地和小麦地消耗深度分别为200、300 cm和300 cm,且补充深度均超过了测定的土壤深度,大于600 cm。     

Rapid redistribution of agricultural land alters avian richness,abundance, and functional diversity

The conversion of natural, or seminatural, habitats to agricultural land and changes in agricultural land use are significant drivers of biodiversity loss. Within the context of land‐sharing versus land‐sparing debates, large‐scale commercial agriculture is known to be detrimental to biodiversity, but the effects of small‐scale subsistence farming on biodiversity are disputed. This poses a problem for sustainable land‐use management in the Global South, where approximately 30% of farmland is small‐scale. Following a rapid land redistribution program in Zimbabwe, we evaluated changes in avian biodiversity by examining richness, abundance, and functional diversity. Rapid land redistribution has, in the near term, resulted in increased avian abundance in newly farmed areas containing miombo woodland and open habitat. Conversion of seminatural ranched land to small‐scale farms had a negative impact on larger‐bodied birds, but species richness increased, and birds in some feeding guilds maintained or increased abundance. We found evidence that land‐use change caused a shift in the functional traits of the communities present. However, functional analyses may not have adequately reflected the trait filtering effect of land redistribution on large species. Whether newly farmed landscapes in Zimbabwe can deliver multiple benefits in terms of food production and habitat for biodiversity in the longer term is an open question. When managing agricultural land transitions, relying on taxonomic measures of diversity, or abundance‐weighted measures of function diversity, may obscure important information. If the value of smallholder‐farmed land for birds is to be maintained or improved, it will be essential to ensure that a wide array of habitat types is retained alongside efforts to reduce hunting and persecution of large bird species.     

2030年闽三角城市群土地利用变化对生态系统水源涵养服务的影响

生态系统水源涵养服务作为水资源得以持续的基础和保障,正持续遭受着人类活动的干扰和影响,土地利用变化作为主要的方式之一,对水源涵养的影响广泛而且深远。运用InVEST模型模拟了闽三角城市群2015年和2030年的水源涵养情景,发现到2030年闽三角城市群区域内水源涵养量总体会下降0.24×10⁸ m³;对比发现：土地利用变化对水源涵养的影响主要主要表现在变化面积、变化方向、作用强度以及面积补偿作用四个方面。首先面积变化方面,水源涵养量同用地类型的面积大小正相关,但二者的变化量并不正相关;其次变化方向方面,相比变化为城市生态系统和水域生态系统而言,变化为自然生态系统和农业生态系统的土地利用变化更有利于生态系统水源涵养;再次,土地利用变化对水源涵养产生作用的强度由强及弱以此为林地、其他土地、草地、农田、建设用地、水域及滩涂;最后,面积变化后的补偿作用方面,由于不同用地类型水源涵养能力和面积变化量的差异,由农田、林地、草地及其他土地面积下降导致的水源涵养量损失并不能通过建设用地、水域及滩涂用地类型面积的增加得以完全补偿。     

Differential responses of cryptic bat species to the urban landscape

Urbanization is a key global driver in the modification of land use and has been linked to population declines even in widespread and relatively common species. Cities comprise a complex assortment of habitat types yet we know relatively little about the effects of their composition and spatial configuration on species distribution. Although many bat species exploit human resources, the majority of species are negatively impacted by urbanization. Here, we use data from the National Bat Monitoring Programme, a long‐running citizen science scheme, to assess how two cryptic European bat species respond to the urban landscape. A total of 124 × 1 km² sites throughout Britain were surveyed. The landscape surrounding each site was mapped and classified into discrete biotope types (e.g., woodland). Generalized linear models were used to assess differences in the response to the urban environment between the two species, and which landscape factors were associated with the distributions of P. pipistrellus and P. pygmaeus. The relative prevalence of P. pygmaeus compared to P. pipistrellus was greater in urban landscapes with a higher density of rivers and lakes, whereas P. pipistrellus was frequently detected in landscapes comprising a high proportion of green space (e.g., parklands). Although P. pipistrellus is thought to be well adapted to the urban landscape, we found a strong negative response to urbanization at a relatively local scale (1 km), whilst P. pygmaeus was detected more regularly in wooded urban landscapes containing freshwater. These results show differential habitat use at a landscape scale of two morphologically similar species, indicating that cryptic species may respond differently to anthropogenic disturbance. Even species considered relatively common and well adapted to the urban landscape may respond negatively to the built environment highlighting the future challenges involved in maintaining biodiversity within an increasingly urbanized world.     

Effects of human‐induced prey depletion on large carnivores in protected areas: Lessons from modeling tiger populations in stylized spatial scenarios

Prey depletion is a major threat to the conservation of large carnivore species globally. However, at the policy‐relevant scale of protected areas, we know little about how the spatial distribution of prey depletion affects carnivore space use and population persistence. We developed a spatially explicit, agent‐based model to investigate the effects of different human‐induced prey depletion experiments on the globally endangered tiger (Panthera tigris) in isolated protected areas—a situation that prevails throughout the tiger's range. Specifically, we generated 120 experiments that varied the spatial extent and intensity of prey depletion across a stylized (circle) landscape (1,000 km²) and Nepal's Chitwan National Park (~1,239 km²). Experiments that created more spatially homogenous prey distributions (i.e., less prey removed per cell but over larger areas) resulted in larger tiger territories and smaller population sizes over time. Counterintuitively, we found that depleting prey along the edge of Chitwan National Park, while decreasing tiger numbers overall, also decreased female competition for those areas, leading to lower rates of female starvation. Overall our results suggest that subtle differences in the spatial distributions of prey densities created by various human activities, such as natural resource‐use patterns, urban growth and infrastructure development, or conservation spatial zoning might have unintended, detrimental effects on carnivore populations. Our model is a useful planning tool as it incorporates information on animal behavioral ecology, resource spatial distribution, and the drivers of change to those resources, such as human activities.     

Land reclamation as a cause of fine-grained sediment depletion in backbarrier tidal flats (Southern North Sea)

Grain size distribution patterns along the East Frisian coast (German Wadden Sea) were evafuated with the aim of identifying potential effects of man-made structures (e.g. dikes) on the textural composition and sediment budget of the area. It was found that the distribution of various grain size fractions and settling velocities revealed a well-defined cross-shore energy gradient. Adjacent to the mainland dike the sediment is dominated by the 3.0–3.5 phi sand fraction (>70% by weight). In comparison to the sedimentary sequences normally observed in unobstructed backbarrier depositional environments, the sediments along the land-ward margin are in this case conspicuously depleted in grain sizes <3.5 phi, the corresponding size fractions contributing <20% by weight. This suggests that the dike interrupts the normal energy gradient, thereby inhibiting the deposition of sediments with settling velocities <0.5 cm s⁻¹. This interpretation is confirmed when comparing individual cross-shore transects. The shorter the transect between the barrier island shore and the dike, the greater the fine sediment depletion. Since many faunal assemblages are grain-size specific, it is further suggested that the backbarrier ecosystem must have undergone significant modifications as a result of the substantial reduction in mud flats since the onset of dike construction some 1000 years BP. It is predicted that in the wake of the persisting and possibly accelerating sealevel rise this process of fine sediment depletion will continue and also affect progressively coarser sediments.     

Land Use Intensification and Disintensification in the Upper Cañete Valley, Peru

Farmers in the Upper Cañete valley have both disintensified and intensified land use. The direction of land use change depends on the production zone in which it takes place. Although land in the distant rainfed agropastoral zone is disintensified through land abandonment and an increase of the fallow period, land in the nearby irrigated agropastoral zone is intensified through more frequent cropping, and the use of high-yielding potato varieties, fertilizers, and pesticides. Simultaneous intensification and disintensification contradicts Boserup's theory of agricultural intensification, which predicts unilinear change for all land use systems within a village territory. Population has decreased in the Upper Cañte valley, but this factor alone cannot explain the dynamics of land use. Land use change is also driven by differences and complementarity between production zones, their distance from the villages, and social, economic, and technological change.     

Evaluation and optimization of IgY spin column technology in the depletion of abundant proteins from human serum

Serum depletion strategies are commonly implemented in order to remove abundant proteins, increasing the number of proteins detected in a biomarker study. The IgY spin columns used in this study bind 12 and 14 primate proteins, respectively. 1‐D SDS‐PAGE and 2‐DE revealed a suboptimal performance of the IgY spin columns. However, modification of the manufacturer's protocol, subjecting samples to two rounds of depletion, improved the number of proteins resolved by 2‐DE. With alteration of the manufacturer protocol, the Seppro^® IgY14 spin column can produce depleted serum with an increased number of spots resolved by 2‐DE compared to untreated serum.     

Shadow conservation and the persistence of sacred church forests in northern Ethiopia

Land‐use change threatens biodiversity and ecosystem function worldwide. These changes have impacts on weather patterns, carbon storage, biodiversity, and other ecosystem services from regional to local scales. Only 8 percent of tropical forests are formally recognized as conservation areas, however globally, there is a network of sites that are protected because they are sacred and as a result act as ‘shadow’ conservation for biodiversity. Unlike other types of protected sites (e.g., national parks), these sites are seats of religious ritual that anchor a community's cultural identity, while also conserving biological diversity and other ecosystem services. We studied the extent and status of sacred forests in northern Ethiopia, which are threatened because of their small size (~5 ha) and isolation, increasing their exposure to edge effects and human pressures. Using historical and modern imagery, we found that over the last 50 yr, sacred forests have increased in area, but decreased in crown closure. We also found that forest ecological status, via ground‐level investigation, had high mean human disturbance (e.g., trails, plantations, exotic planting; 37%); and that forests close to markets (e.g., cities) increased in area due to planting of Eucalyptus (exotic), indicating a potential threat to their persistence and value as shelters of the church.     

The effects of initial population density on the competition for limiting nutrients in two freshwater algae

Eighteen long-term competition experiments were performed on two freshwater algae, a blue-green alga, Anabaena flos-aquae, and a diatom, Cyclotella sp., under controlled light and temperature conditions and various nutrient limitations. As predicted, Anabaena displaced Cyclotella when nitrate was in short supply to both species, whereas Cyclotella became dominant when both species were phosphate-limited. The two species stably coexisted when phosphate and silicate were limited. Anabaena either displaced or coexisted with Cyclotella when nitrate and phosphate or nitrate, phosphate and silicate were limited, depending on their initial density ratios. This study revealed strong effects of initial population densities on the outcomes of algal competition for limiting nutrients.     

Environmental change,shifting distributions,and habitat conservation plans: A case study of the California gnatcatcher

Many species have already experienced distributional shifts due to changing environmental conditions, and analyzing past shifts can help us to understand the influence of environmental stressors on a species as well as to analyze the effectiveness of conservation strategies. We aimed to (1) quantify regional habitat associations of the California gnatcatcher (Polioptila californica ); (2) describe changes in environmental variables and gnatcatcher distributions through time; (3) identify environmental drivers associated with habitat suitability changes; and (4) relate habitat suitability changes through time to habitat conservation plans. Southern California's Western Riverside County (WRC ), an approximately 4,675 km² conservation planning area. We assessed environmental correlates of distributional shifts of the federally threatened California gnatcatcher (hereafter, gnatcatcher) using partitioned Mahalanobis D ² niche modeling for three time periods: 1980–1997, 1998–2003, and 2004–2012, corresponding to distinct periods in habitat conservation planning. Highly suitable gnatcatcher habitat was consistently warmer and drier and occurred at a lower elevation than less suitable habitat and consistently had more CSS , less agriculture, and less chaparral. However, its relationship to development changed among periods, mainly due to the rapid change in this variable. Likewise, other aspects of highly suitable habitat changed among time periods, which became cooler and higher in elevation. The gnatcatcher lost 11.7% and 40.6% of highly suitable habitat within WRC between 1980–1997 to 1998–2003, and 1998–2003 to 2004–2012, respectively. Unprotected landscapes lost relatively more suitable habitat (?64.3%) than protected landscapes (30.5%). Over the past four decades, suitable habitat loss within WRC , especially between the second and third time periods, was associated with temperature‐related factors coupled with landscape development across coastal sage scrub habitat; however, development appears to be driving change more rapidly than climate change. Our study demonstrates the importance of providing protected lands for potential suitable habitat in future scenarios.     

P-glycoprotein expression induced by glucose depletion enhanced the chemosensitivity in human hepatocellular carcinoma cell-lines

Chemoresistance in cancer cells is frequently associated with an over-expression of the P-glycoprotein (P-gp). The expression of P-gp can be regulated as the cells encounter a number of chemical, physical or environmental stimuli. In this study, P-gp was found gradually expressed in a human hepatocellular carcinoma (HCC) QGY-7703 cells after 48 h of culturing in glucose-free medium. This phenomenon disappeared after the removal of glucose deprivation culture conditions. Mdr1-cDNA isolated from the cell line cultured in glucose-free conditions (namely QGY-7703G), was transiently transformed into the parent QGY-7703 cells, and multi-drug resistance was eventually induced. Results from XTT cytotoxicity assays indicated that the mdr1 gene was functional and the P-gp could restore the QGY-7703 cell's ability to withstand high concentrations of a number of chemotherapeutic agents. A P-gp inhibitor, verapamil, could completely reverse the cellular drug resistance when applied to the QGY-7703G cells. Our results indicated that an alteration of a specific state in cells caused by an external stimulus in vitro may lead to an expression of stress proteins (e.g. P-gp), which may enhance the cells' survival in adverse conditions. The expressed P-gp induced by glucose deprivation has a functional role in affecting the chemosensitivity in HCC QGY-7703G cells. Inhibition of P-gp activity may enhance the effect of the cancer cells towards cancer chemotherapy.     

Dung beetle diversity and functions suggest no major impacts of cattle grazing in the Brazilian Pantanal wetlands

1. Dung beetles perform relevant ecological functions in pastures, such as dung removal and parasite control. Livestock farming is the main economic activity in the Brazilian Pantanal. However, the impact of cattle grazing on the Pantanal's native dung beetle community, and functions performed by them, is still unknown. 2. This study evaluated the effects of cattle activity on dung beetle community attributes (richness, abundance, biomass, composition, and functional group) as well as their ecological functions (dung removal and soil bioturbation) in the Pantanal. In January/February 2016, dung beetles were sampled and their ecological functions measured in 16 sites of native grasslands in Aquidauana, Mato Grosso do Sul, Brazil, 10 areas regularly grazed by cattle and six control ungrazed areas (> 20 years of abandonment). 3. In all, 1169 individuals from 30 species of dung beetles were collected. Although abundance, species richness, and biomass did not differ between grasslands with and without cattle activity, species composition and functional groups differed among systems. Large roller beetles were absent from non‐cattle grasslands, and the abundance, richness, and biomass of medium roller beetles was higher in those systems. 4. Despite causing changes in species/functional group composition, the results of this study show that a density compensation of functional groups in cattle‐grazed natural grasslands seems to have conserved the ecological functions (dung removal and soil bioturbation), with no significant differences between systems. 5. Therefore, these results provide evidence that cattle breeding in natural grasslands of the Brazilian Pantanal can integrate livestock production with the conservation of the dung beetle community and its ecological functions.     

Current distribution,breeding population and habitat use of the globally threatened Grey-necked Picathartes Picathartes oreas in south-eastern Nigeria: a call for conservation action

The Grey-necked Picathartes Picathartes oreas is a globally threatened bird species in Africa with a wild population of less than 10,000 individuals. The Nigerian population, which has been poorly studied, is restricted to the forest of Cross River. This study re-assessed the distribution, breeding population, habitat use and current threats of the Grey-necked Picathartes by revisiting the 91 breeding sites identified during the first and only survey of the species in 1987. We estimated a breeding population of 164 individuals across 82 breeding sites. Only 72 breeding sites were found in the localities where 91 had been registered in 1987. Thirteen (18%) of these 72 sites were no longer active and showed evidence of human disturbance. The occurrence of Grey-necked Picathartes’ nest sites was positively predicted by higher number of emergent trees, larger rocks and negatively related to disturbance matrices. Similarly, larger colony sizes were associated with high canopy cover and rock height. Also, the probability of finding an active nest within a breeding colony was significantly predicted by increased canopy, tree density and ground cover. Human threats included farming, wire snares, egg and juvenile removal, bush burning, and hunter’s camps. These threats, though specific to the Grey-necked Picathartes, threaten the integrity of the Cross River forest habitats.     

Utilizing a library of synthetic affinity ligands for the enrichment, depletion and one-step purification of leech proteins

Although the concept of affinity purification using synthetic ligands had been utilized for many years, there are few articles related to this research area, and they focus only on the affinity purification of specific protein by a defined library of synthetic ligands. This study presents the design and construction of a 700-member library of synthetic ligands in detail. We selected 297 ligand columns from a 700-member library of synthetic ligands to screen leech protein extract. Of the 297, 154 columns had an enrichment effect, 83 columns had a depletion effect, 36 columns had a one-step purification effect, and 58 columns had a one-step purification via flowthrough effect. The experimental results achieved by this large library of affinity ligands provide solid convincing data for the theory that affinity chromatography could be used for the enrichment of proteins that are present in low abundance, the depletion of high abundance proteins, and one-step purification of special proteins.