Natural 13C and 15N abundance of field-collected fungi and their ecological implications

The natural abundance of ¹³C and ¹⁵N was measured in basidiocarps of at least 115 species in 88 genera of ectomycorrhizal, wood-decomposing and litter-decomposing fungi from Japan and Malaysia. The natural abundance of ¹³C and ¹⁵N was also measured in leaves, litter, soil and wood from three different sites. ¹⁵N and ¹³C were enriched in ectomycorrhizal and wood-decomposing fungi, respectively, relative to their substrates. Ectomycorrhizal and wood-decomposing fungi could be distinguished on the basis of their δ¹³C and δ¹⁵N signatures. Although there was high variability in the isotopic composition of fungi, the following isotope- enrichment factors (ε, mean±SD) of the fungi relative to substrates were observed:
ε_{ectomycorrhizal fungi/litter} = 6.1±0.4‰¹⁵N
ε_{ectomycorrhizal fungi/wood} = 1.4±0.8‰¹³C
ε_{wood-decomposing fungi/wood} = −0.6±0.7‰¹⁵N
ε_{wood-decomposing fungi/wood} = 3.5±0.9‰¹³C
The basis of isotope fractionation in C metabolism from wood to wood-decomposing fungus is discussed.     

Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations, and nitrogen availability

Ratios of nitrogen (N) isotopes in leaves could elucidate underlying patterns of N cycling across ecological gradients. To better understand global-scale patterns of N cycling, we compiled data on foliar N isotope ratios (δ¹⁵N), foliar N concentrations, mycorrhizal type and climate for over 11 000 plants worldwide. Arbuscular mycorrhizal, ectomycorrhizal, and ericoid mycorrhizal plants were depleted in foliar δ¹⁵N by 2‰, 3.2‰, 5.9‰, respectively, relative to nonmycorrhizal plants. Foliar δ¹⁵N increased with decreasing mean annual precipitation and with increasing mean annual temperature (MAT) across sites with MAT ≥ −0.5°C, but was invariant with MAT across sites with MAT < −0.5°C. In independent landscape-level to regional-level studies, foliar δ¹⁵N increased with increasing N availability; at the global scale, foliar δ¹⁵N increased with increasing foliar N concentrations and decreasing foliar phosphorus (P) concentrations. Together, these results suggest that warm, dry ecosystems have the highest N availability, while plants with high N concentrations, on average, occupy sites with higher N availability than plants with low N concentrations. Global-scale comparisons of other components of the N cycle are still required for better mechanistic understanding of the determinants of variation in foliar δ¹⁵N and ultimately global patterns in N cycling.     

Stable isotopes of carbon and nitrogen as indicators of diet and trophic structure of the fish community in a shallow hypereutrophic lake

Stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotopes were employed to elucidate energy flows and trophic interactions in Lake Apopka, a hypereutrophic lake in central Florida, U.S.A. Isotope compositions of lake biota ranged from −27·1 to −3·0‰ for δ¹³C, and from 3·7 to 13·9‰ for δ¹⁵N. The food web was based primarily on plankton production with diatoms, Microcystis and zooplankton dominating the diet of fish. Carbon isotope evidence showed that pico- and nano-phytoplankton were not a direct carbon source for fish, but were important to zooplankton. δ¹⁵N mass balance estimates indicated that planktivorous fish obtained 48–85% of their diets from zooplankton. The ∼3‰ range of δ¹⁵N in gizzard shad reflected increasing dependence on zooplankton as fish grew whereas the positive relationship between total length and δ¹⁵N of largemouth bass reflected increasing predation on larger planktivorous fish with growth. The broad ranges of δ¹³C (−25·9 to −9·5‰) and δ¹⁵N (5·8 to 14·4‰) of blue tilapia were indicators of diet diversity. Two presumed omnivores (brown bullhead and white catfish) and piscivores (black crappie, largemouth bass and Florida gar) were found to depend on planktivorous fish. However, stable isotope data revealed no trophic links between blue tilapia, an abundant fish in the near-shore area, and piscivores.     

How to account for the lipid effect on carbon stable-isotope ratio (δ13C): sample treatment effects and model bias

This study investigated the impact of lipid extraction, CaCO₃ removal and of both treatments combined on fish tissue δ¹³C, δ¹⁵N and C:N ratio. Furthermore, the suitability of empirical δ¹³C lipid normalization and correction models was examined. δ¹⁵N was affected by lipid extraction (increase of up to 1·65‰) and by the combination of both treatments, while acidification alone showed no effect. The observed shift in δ¹⁵N represents a significant bias in trophic level estimates, i.e. lipid-extracted samples are not suitable for δ¹⁵N analysis. C:N and δ¹³C were significantly affected by lipid extraction, proportional to initial tissue lipid content. For both variables, rates of change with lipid content (ΔC:N and Δδ¹³C) were species specific. All tested lipid normalization and correction models produced biased estimates of fish tissue δ¹³C, probably due to a non-representative database and incorrect assumptions and generalizations the models were based on. Improved models need a priori more extensive and detailed studies of the relationships between lipid content, C:N and δ¹³C, as well as of the underlying biochemical processes.     

Trophic level and overlap of sea lions (Zalophus californianus) in the Gulf of California, Mexico

Stable isotope and scat analyses were used in concert to determine trophic level and dietary overlap among California sea lions from different rookeries in the Gulf of California. Isotopic analysis of the fur of sea lion pups revealed differences in δ¹⁵N and δ¹³C values among rookeries during the breeding season. Mean δ¹⁵N and δ¹³C values varied from 20.2‰ to 22.4‰ and from −15.4‰ to −14.0‰, respectively. The pattern of differences among rookeries was similar between years in most cases. Isotopic variations among rookeries were associated with differences in prey consumption. There was a significant correlation between δ¹⁵N value and trophic level, as determined by scat analysis. Joint application of isotopic and scat analyses allowed us to identify how the feeding habits of sea lions vary with location. Our results suggest the presence of spatial structure in available prey as well as the localized use of prey by sea lions across the Gulf of California.     

Stable isotope profiles of partially migratory salmonid populations in Atlantic rivers of Patagonia

In the present study, profiles of stable isotope composition were characterized for two species with partially migratory populations in rivers along the latitudinal gradient of Patagonia, brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss . The effects of factors ( e.g. ontogeny of fishes, location, species and fasting) that may influence the stable isotope analysis (SIA) were evaluated, as was SIA evaluated as a tool to assign individual fish to their corresponding ecotype. Anadromous fishes exhibited enriched δ¹⁵N (15·2 ± 1·0‰; mean ± s . d .) and δ¹³C (−19·2 ± 1·3‰) relative to resident fishes'δ¹⁵N (8·8 ± 1·1‰) and δ¹³C (−23·2 ± 2·5‰). For both species, the difference in δ¹⁵N was larger between resident (range 6·8–10·7‰) and anadromous (range 14·3–17·8‰) fishes than that in δ¹³C. Values of δ¹³C, while not as dramatically contrasting in rainbow trout, provided a powerful anadromy marker for brown trout in the region. Increases were found in both δ¹⁵N and δ¹³C during the spawning migration of anadromous rainbow trout, most likely due to fasting. Differences in stable isotopes between location, size and species were found, suggesting different stable isotopes base levels in freshwater environments and different trophic levels and feeding location of anadromous populations. The SIA was demonstrated as a powerful tool for ecotype discrimination in Patagonian Rivers, overriding any effect of sampling location, size or species.     

Uptake of salmon-derived nitrogen by mosses and liverworts in coastal British Columbia

Throughout forested watersheds bordering the North Pacific, anadromous salmon ( Oncorhynchus spp . ) are transferred into coastal forests by numerous predators and scavengers with remnants providing an important nutrient subsidy to riparian zones. The contribution of these nutrients to mosses and liverworts, which are the dominant ground cover of coastal forests, has not been investigated. We examine here δ¹⁵N isotope signatures and foliar percent N of eight moss and liverwort species, as well as moss and liverwort community structure, in multiple habitat blocks that vary in access to salmon nutrients from two watersheds on the central coast of British Columbia. For the most common moss Rhytidiadelphus loreus , we also examine δ¹⁵N values and foliar percent N among salmon carcass micro-sites and along wildlife trails. Overall, δ¹⁵N signatures ranged from 2‰ to 7‰ higher below the falls near the salmon stream than above the small falls that are impassable to salmon, or at the adjacent control watershed that had no salmon. Among micro-sites, δ¹⁵N and %N values were highest near bony carcass remnants from transfer during previous years and high adjacent to wildlife trails indicating spatial heterogeneity in the salmon nutrient pools of these forests. Species richness and prevalence of nitrogen-rich soil indicators were also highest in forests adjacent to the salmon stream. These data suggest an important contribution of salmon-derived nutrients to the non-vascular plants of the riparian zone of old-growth forests throughout the Pacific Rim.     

Habitat use and trophic position determine mercury concentration in the straight fin barb Barbus paludinosus, a small fish species in Lake Awassa, Ethiopia

The diet, habitat use and mercury concentration of the small fish species, the straight fin barb Barbus paludinosus , were studied in Lake Awassa, Ethiopia, for a period of 1 year from February 2003 to January 2004. Stable isotope signatures of nitrogen and carbon in different total length ( L _T) classes were used to determine trophic positions and organic carbon sources, respectively. Barbus paludinosus mainly occupied the protected benthic habitats (littoral and profundal) of the lake. The δ¹³C values were in the range from −24 to −19‰, indicating that the carbon source for B. paludinosus was benthic, as well. Small individuals (≤ 60 mm L _T) mainly preyed upon ostracods, intermediate sizes (60–100 mm) on aquatic insects and gastropods, while a tiny cyprinodont fish Aplocheilichthys antinorii dominated the diet of large individuals (100–160 mm). The progressively increase in δ¹⁵N with increasing L _T also indicated a diet shift towards piscivory in larger individuals. The mercury concentration ranging from 0·02 to 0·74 mg kg⁻¹ wet mass (wm), was unexpectedly high in this small species, and was significantly positively related to L _T, as well as to δ¹⁵N. Some large individuals had mercury concentrations < 0·1 mg kg⁻¹ wm, and low δ¹⁵N, indicating substantial variations in diet between individuals of same size. The study suggests that other piscivorous species which include B. paludinosus in their diet may have a high mercury intake risk.     

Nitrogen and carbon isotope ratios in termites: an indicator of trophic habit along the gradient from wood-feeding to soil-feeding

1. Nitrogen and carbon stable-isotope ratios (δ¹⁵N and δ¹³C) of body tissues, mound/nest materials and dietary substrates were determined in termite species with differing trophic habits, sampled from the Mbalmayo Forest Reserve, southern Cameroon.
2. δ¹⁵N of termite tissues was enriched gradually along a spectrum of species representing a trophic gradient from wood- to soil-feeding. Species that could be identified from their general biology and from gut content analysis as feeding on well-rotted wood or as wood/soil interface feeders showed δ¹⁵N intermediate between sound-wood-feeders and soil-feeders. It is proposed that δ¹⁵N is therefore a possible indicator of the functional position of species in the humification process. Differences in δ¹³C were also observed between wood-feeding and soil-feeding forms.
3. High values of δ¹⁵N in soil-feeding termites suggest that nitrogen fixation is of little importance in these species.
4. A wide range of isotope effects (the difference in isotope ratios between termites and their diet) was observed for both nitrogen (Δδ¹⁵N = –1.6 to + 8.8‰) and carbon (Δδ¹³C = –2.2 to + 3.0‰), which suggests a diversity of nutrient acquisition mechanisms within termites and diverse relationships between termites and their intestinal micro-organisms.     

15N natural abundance in fruit bodies of different functional groups of fungi in relation to substrate utilization

Natural abundances of ¹⁵N and N concentrations of 34 fruit bodies from 24 species of ectomycorrhizal and saprophytic fungi were measured in a temperate Central European mixed forest stand. The fungi of the two life forms are known to be capable of utilizing different types of N sources (organic N compounds from the humus, inorganic N from the soil and N from litter or wood) differing by their ¹⁵N natural abundance values. Based on the two life forms and the three different N sources, four functional groups of fungi were distinguished: (1) ectomycorrhizal fungi capable of utilizing organic N from the humus; (2) ectomycorrhizal fungi known to depend on inorganic N compounds in the soil; (3) saprophytes capable of utilizing organic N from the humus; and (4) saprophytes utilizing N from dead wood or litter. Large differences were found between species in the δ¹⁵N values (−3.0 to 3.3‰) and in the N concentrations (0.84 to 6.61 mmol eq N g dw⁻¹) of the fruit bodies. In most cases fungi were more enriched in ¹⁵N than their respective bulk N source was. Fungi living in humus, and presumably having access to organic N compounds (groups 1 and 3), were significantly more enriched in ¹⁵N than fungi which are known to depend on inorganic N (e.g. Laccaria , group 2), or fungi living on litter or wood (group 4), irrespective of whether they were ectomycorrhizal or saprophytic species. Fungi living in humus had significantly higher N concentrations than fungi living on litter or wood.     

Trophic relationships in a tropical stream food web assessed by stable isotope analysis

1. Stable isotope analysis, coupled with dietary data from the literature, was used to investigate trophic patterns of freshwater fauna in a tropical stream food web (Guadeloupe, French West Indies).
2. Primary producers (biofilm, algae and plant detritus of terrestrial origin) showed distinct δ¹³C signatures, which allowed for a powerful discrimination of carbon sources. Both autochthonous (¹³C-enriched signatures) and allochthonous (¹³C-depleted signatures) resources enter the food web. The migrating behaviour of fishes and shrimps between marine and freshwater during their life cycles can be followed by carbon isotopes. Here, shrimp δ¹³C signatures were shown to shift from −16‰ (for juveniles under marine influence) to −24.7‰ (for adults in freshwater habitats). For resident species, δ¹³C values partly reflected the species' habitat preferences along the river continuum : species living in river mouths were ¹³C-enriched in comparison with those collected upstream.
3. Nitrogen isotopic ratios were also discriminating and defined three main trophic guilds among consumers. The δ¹⁵N values of herbivores/detritivores were 5.0–8.4‰, omnivores 8.8–10.2‰ and carnivores 11–12.7‰.
4. Mixing model equations were employed to calculate the possible range of contribution made by respective food sources to the diet of each species. The results revealed the importance of omnivorous species and the dependence of riverine biota on terrestrial subsidies, such as leaf detritus and fruits. Finally, the abundance of shrimps and their feeding habits placed in relief their key role in tropical freshwater food webs. Isotopic analysis provides a useful tool for assessing animal feeding patterns.     

The diet of ruffe Gymnocephalus cernuus (L.) in northern lakes: new insights from stable isotope analyses

The diet of ruffe Gymnocephalus cernuus was studied in two native populations in lakes of different productivity in south-west Finland using both traditional stomach content analyses and stable isotopes. According to stomach content analyses, chironomids were the most important prey type in both lakes and the diversity of the other prey reflected the zoobenthos community in the lake. Stable isotope analyses of carbon and nitrogen showed distinctive lake-specific and total length ( L _T)-related patterns in both δ¹³C and δ¹⁵N values, which could not be explained solely with diet changes. In the large mesotrophic Pyhäjärvi, both ¹³C and ¹⁵N isotopes became slightly enriched with increasing ruffe L _T, although stomach contents analyses did not suggest any diet change in larger ruffe. In the hypereutrophic Köyliönjärvi, the carbon isotope signatures of ruffe especially showed wide variation (−33·5 to −24·1‰), which was probably due to variable consumption of prey items with highly negative carbon isotope signatures. Overall, this study emphasizes that the interpretation of stable isotope results requires extensive background data of the system and that even then the diet composition of a consumer may be very difficult to define due to large variation in the signatures.     

Extensive carbon isotopic heterogeneity among methane seep microbiota

To assess and study the heterogeneity of δ¹³C values for seep microorganisms of the Eel River Basin, we studied two principally different sample sets: sediments from push cores and artificial surfaces colonized over a 14 month in situ incubation. In a single sediment core, the δ¹³C compositions of methane seep-associated microorganisms were measured and the relative activity of several metabolisms was determined using radiotracers. We observed a large range of archaeal δ¹³C values (> 50‰) in this microbial community. The δ¹³C of ANME-1 rods ranged from −24‰ to −87‰. The δ¹³C of ANME-2 sarcina ranged from −18‰ to −75‰. Initial measurements of shell aggregates were as heavy as −19.5‰ with none observed to be lighter than −57‰. Subsequent measurements on shell aggregates trended lighter reaching values as ¹³C-depleted as −73‰. The observed isotopic trends found for mixed aggregates were similar to those found for shell aggregates in that the initial measurements were often enriched and the subsequent analyses were more ¹³C-depleted (with values as light as −56‰). The isotopic heterogeneity and trends observed within taxonomic groups suggest that ANME-1 and ANME-2 sarcina are capable of both methanogenesis and methanotrophy. In situ microbial growth was investigated by incubating a series of slides and silicon (Si) wafers for 14 months in seep sediment. The experiment showed ubiquitous growth of bacterial filaments (mean δ¹³C = −38 ± 3‰), suggesting that this bacterial morphotype was capable of rapid colonization and growth.     

Stable carbon isotope fractionation by marine phytoplankton during photosynthesis

Abstract. In the marine environment, the range of values of carbon isotope fractionation between particulate tissue of phytoplankton and inorganic carbon can be more than 20‰ (− 35‰ < δ¹³C < − 14‰). This review considers the influence of seawater temperature, lipid content of phytoplanktonic cells, kinetic fractionation, and carbon pathway on δ¹³C values observed at sea.
In order to study the contribution of carboxylases (RUBISCO and the β-carboxylases phosphoenolpyruvate carboxylase, phosphoenoplpyruvate carboxykinase and pyruvate carboxylase) to variations of particulate δ¹³C values at sea, we present results obtained simultenously on carboxylase activities and δ¹³C in various environmental conditions. The lowest δ¹³C values are clearly associated with predominance of ribulose-1.5-bisphosphate carboxylase activity, but it was more difficult to explain the high δ¹³C values. Different hypotheses are discussed.     

Different carbon support for respiration and secondary production in unproductive lakes

This study investigates the allocation of allochthonous organic carbon (AlloOC) to pelagic respiration and biomass production in unproductive lakes. Metabolic process rates and stable isotopic composition (δ¹³C) of crustacean zooplankton and respired CO₂ were measured in the epilimnion of 13 forest lakes in northern Sweden. The δ¹³C of zooplankton was low (−31.2 to −38.0‰) compared to that of respired CO₂ (−28.4 to −30.6‰), implying that the relative importance of AlloOC was lower for zooplankton (ca 40%) than for respiration (ca 80%). Combining δ¹³C and carbon flux data revealed that a large amount of metabolized AlloOC was lost in respiration, compared to the amount transferred to zooplankton (<3%). Thus, despite large respiratory losses, AlloOC was still important for zooplankton growth, implying a high supply of AlloOC in comparison to phytoplankton generated organic carbon in the lakes.     

Does the 13C of foliage‐respired CO2 and biochemical pools reflect the 13C of recently assimilated carbon?

Isotopic labelling experiments were conducted to assess relationships among ¹³C of recently assimilated carbon ( δC _A), foliage respiration ( δC _F), soluble carbohydrate ( δC _SC), leaf waxes ( δC _LW) and bulk organic matter ( δC _OM). Slash pine, sweetgum and maize were grown under ¹³C depleted CO₂ to label biomass and then placed under ambient conditions to monitor the loss of label. In pine and sweetgum, δC _F of labelled plants (∼−44 and −35‰, respectively) rapidly approached control values but remained depleted by ∼4–6‰ after 3–4 months. For these tree species, no or minimal label was lost from δC _SC, δC _LW and δC _OM during the observation periods. δC _F and δC _SC of labelled maize plants rapidly changed and were indistinguishable from controls after 1 month, while δC _LW and δC _OM more slowly approached control values and remained depleted by 2–6‰. Changes in δC _F in slash pine and sweetgum fit a two-pool exponential model, with the fast turnover metabolic pool (∼3–4 d half-life) constituting only 1–2% of the total. In maize, change in δC _F fits a single pool model with a half-life of 6.4 d. The ¹³C of foliage respiration and biochemical pools reflect temporally integrated values of δC _A, with change in isotopic composition dampened by the size of metabolic carbon reserves and turnover rates.     

Fractionation of δ15N and δ13C for Atlantic salmon and its intestinal cestode Eubothrium crassum

Stable isotopes of nitrogen (δ¹⁵N) and carbon (δ¹³C) were measured for Atlantic salmon Salmo salar and their intestinal cestode, Eubothrium crassum , sharing the same diet. Atlantic salmon muscle tissues were enriched in ¹⁵N and depleted in ¹³C compared to their prey (sprat Sprattus sprattus sprattus ) and their intestinal cestode. There was no significant difference in δ¹⁵N or δ¹³C between E. crassum and the sprat. Differences in nutrient uptake and intestine physiology between Atlantic salmon and E. crassum are discussed, as well as how these may give rise to different fractionations of stable isotopes between a host and its parasites. Furthermore, Atlantic salmon contained a significantly higher lipid content than their prey, which may partly explain differences in δ¹³C values between the host and its cestode. In addition, cestodes inhabiting lipid-rich hosts were also lipid rich. Larger Atlantic salmon were enriched in ¹⁵N compared to smaller fish. Cestodes inhabiting large hosts were also enriched in ¹⁵N compared to parasites living in smaller hosts. The last two results were explained by larger fish possibly feeding from a higher trophic level, or from larger and older prey, that resulted in both a higher lipid content and an enrichment in ¹⁵N.     

Stable isotope evidence of trophic interactions between introduced brook trout Salvelinus fontinalis and native brown trout Salmo trutta in a mountain stream of south-west France

The potential trophic impact of introduced brook trout Salvelinus fontinalis on native brown trout Salmo trutta in a mountain stream (south-west France) was investigated using stable isotope analysis (SIA). The isotopic signatures (δ¹³C and δ¹⁵N) of S. fontinalis were similar regardless of the absence or presence of S. trutta , and SIA mixing models revealed that S. fontinalis diet consisted mainly of terrestrial invertebrates. Conversely, a significant shift in S. trutta isotopic signatures (depletion of 1·6‰δ¹³C and enrichment of 0·6‰δ¹⁵N) was observed in sympatry with S. fontinalis ; this may be due to a dietary shift towards terrestrial invertebrates. Contrary to an expected dietary divergence in sympatry, an elevated level of dietary overlap was observed between the non-native and native salmonids when in co-occurrence. This dietary convergence is more likely to be due to behavioural interactions than to variations in food availability or fish displacements.     

Stable isotope analysis of macroinvertebrates and their food sources in a glacier stream

1. Food sources and trophic structure of the macroinvertebrate community along a longitudinal gradient were examined in a glacier stream of the Swiss Alps (Val Roseg). Analysis of multiple stable isotopes (δ¹³C and δ¹⁵N) and measurement of C : N ratios were used to differentiate between allochthonous and autochthonous organic matter.
2. Although isotopic signatures of algae varied widely among sites and dates, it was possible to discriminate between allochthonous and autochthonous food sources using a site-specific approach.
3. Dominant food sources of herbivorous invertebrates in all main channel sites were epilithic diatoms and the filamentous gold alga Hydrurus foetidus . Allochthonous organic matter was of some importance only in a groundwater-fed stream close to the floodplain margin.
4. Seasonal changes in the δ¹³C signature of the macroinvertebrates corresponded with seasonal changes in δ¹³C of the gold alga H. foetidus . This indicated that the energy base remains autochthonous throughout the year.
5. Because of limited food sources, feeding plasticity of the invertebrate community was high. Both grazers and shredders fed predominantly on algae, whereas gatherer-collectors seemed to be omnivorous.
6. The overall enrichment of δ¹⁵N was 2.25‰ ( r ²=0.99) per trophic level. On a gradient from the glacier site to a downstream forested site trophic enrichment was constant but variation in δ¹⁵N within trophic levels decreased.