Discovery of an ancient lineage of Cyprinus carpio from Lake Biwa, central Japan, based on mtDNA sequence data, with reference to possible multiple origins of koi

MtDNA sequence data ( c . 2100 bp of complete D‐loop + cytochrome b gene regions) showed a principal phylogenetic split within common carp Cyprinus carpio between the Lake Biwa wild form ( n  = 3) and 'Eurasian' wild ( n  = 18) and domesticated ( n  = 35) forms. This supports the idea of the ancient origin of the Lake Biwa wild form, as well as the East Asian origin of wild common carp, previously proposed on the basis of fossil data. In addition, a possible multiple origin of koi carp was indicated by the polyphyletic distribution of five mtDNA haplotypes of koi carp within the 'Eurasian' clade.     

The ingestion of bacteria in suspension by the common carp Cyprinus carpio L.

Groups of large (65 -75 g) and small (8-17 g) common carp ( Cyprinus carpio L.) fingerlings were exposed to the bacterium Chromobacterium violaceurn in order to establish whether they could detect and ingest unattached bacteria. Small fish exposed to both bacteria and to cell-free bacterial extracts showed a significant increase in opercular beat rates, thus demonstrating that they are able to detect the presence of unattached bacteria in suspension. Examination of carp gut contents showed that the proportion of small fish ingesting bacteria increased with exposure time although no significant relationship was observed among larger fish. Significant, positive correlations between numbers of viable bacteria isolated from the intestinal tracts and concentration in the environment were observed. Possible mechanisms of bacterial ingestion are discussed.     

Preliminary studies on the genetic variability of six Hungarian common carp strains using microsatellite DNA markers

Genetic variation in six Hungarian common carp (Cyprinus carpio L.) strains was evaluated using 12 microsatellite loci. The domesticated (Tatai, Biharugrai and Szarvasi) strains were derived from fish farms. Two of wild strains (Tiszai and Dunai) were sampled from brood stocks maintained at fish farms for breeding, and Kis-Balatoni wild carp were sampled from the Small Balaton Lake. Pairwise Fst-values (0.013–0.161) were highly significant (p<0.0001), demonstrating differentiation among strains. The mean number of alleles ranged between 3.9 and 8.2. Overall mean observed heterozygosity was lower (0.557) than the mean expected heterozygosity (0.700). By strain, the only exception to this trend was the Dunai (Danubian), which showed higher mean observed heterozygosity (0.764) than expected (0.602). For five loci the Dunai strain showed extremely high levels of heterozygosity (1.00). Two wild strains exhibited a number of loci (Tiszai, 4; Dunai, 6) that were not in Hardy–Weinberg equilibrium. A relatively high number of private alleles overall (n=26), as well as differences in allele frequencies supported our ability to assign most individual fish (over 90%) to each strain.     

Partial molecular cloning and tissue distribution of hexokinase I cDNA in common carp

The full C-terminal half of HK-I cDNA was cloned from common carp Cyprinus carpio . This HK-I cDNA is homologous to mammalian HK-I, in its sequence and tissue distribution and probably derives from duplication and fusion of an ancestral gene.     

Morphological and mtDNA sequence studies on three crucian carps (Carassius: Cyprinidae) including a new stock from the Ob River system, Kazakhstan

Three morphologically and genetically distinct forms of the genus Carassius were collected from the Ob River system, Kazakhstan, Central Asia; Carassius carassius , Carassius gibelio gibelio and an unknown stock tentatively referred to as Carassius gibelio sub-species M. The last mentioned had 33–41 gill rakers, being intermediate between the other two forms (23–27 in C. carassius and 44–49 in C. g. gibelio ), and five scales in the upper transverse series, less than in the others. It also had a relatively larger erythrocyte suggesting triploidy and an mtDNA haplotype distinct from all other known crucian carps. Comparative mtDNA phylogenetic analysis suggested that C. gibelio gibelio in the Ob River system was introduced from China and the Amur River, the same possibly being true for European C. gibelio gibelio based on published haplotypes. C. gibelio sub-species M is thought to be more widely distributed in central Asia, probably extending as far west as European Russia.     

Molecular phylogeny of three subspecies of common carp Cyprinus carpio, based on sequence analysis of cytochrome b and control region of mtDNA

The complete cytochrome b and the control region of mtDNA (about 2070 bp in total) of 10 strains belonging to three subspecies of the common carp, including three wild subspecies (the Yangtze River wild common carp – Cyprinus carpio haematopterus , Yuanjiang River wild common carp – Cyprinus carpio rubrofuscus and Volga River wild common carp – Cyprinus carpio carpio ) and seven domestic strains (Xingguo red carp, Russian scattered scaled mirror carp, Qingtian carp, Japanese Koi carp, purse red carp, Big-belly carp, German mirror carp) were sequenced. Phylogenetic analysis indicated that the 10 strains form three distinct clades, corresponding to C. c. haematopterus , C. c. rubrofuscus and C. c. carpio respectively. Purse red carp, an endemic domestic strain in Jiangxi province of China, showed a higher evolution rate in comparison with the other strains of C. c. haematopterus , most probably because of intensive selection and a long history of domestication. Base variation ratios among the three subspecies varied from 0.78% (between C. c. haematopterus and C. c. rubrofuscus ) to 1.47%(between C. c. carpio and C. c. rubrofuscus ). The topography of the phylogenetic tree and the geographic distribution of three subspecies closely resemble each other. The divergence time between C. c. carpio and the other two subspecies was estimated to be about 0.9 Myr and about 0.5 Myr between C. c. haematopterus and C. c. rubrofuscus . Based on phylogenetic analysis, C. c. rubrofuscus might have diverged from C. c. haematopterus .     

Genome evolution trend of common carp （Cyprinus carpio L.） as revealed by the analysis of microsatellite loci in a gynogentic family

Genome evolution arises from two main ways of duplication and reduction. Fish specific genome duplication （FSGD） may have occurred before the radiation of the teleosts. Common carp （Cyprinus carpio L.） has been considered to be a tetraploid species, because of its chromosome numbers （2n=100） and its high DNA content. Using 69 microsatellite primer pairs, the variations were studied to better understand the genome evolution （genome duplication and diploidization） of common carp from a gynogenetic family. About 48% of primer pairs were estimated to amplify duplicates based on the number of PCR amplification per individual. Segregation patterns in the family suggested a partially duplicated genome structure and disomic inheritance. This indicates that the common carp is tetraploid and polyploidy occurred by allotetraploidy. Two primer pairs （HLJ021 and HLJ332） were estimated to amplify reduction based on the number of PCR amplification per individual. One allele in HLJ002 locus and HLJ332 locus was clearly lost in the gynogenetic family and the same as in six wild populations. Segregation patterns in the family suggested a partially diplodization genome structure. A hypothesis transition （dynamic） and equilibrium （static） were proposed to explain the common carp genome evolution between genome duplication and diploidization.     

Endurance exercise training in common carp Cyprinus carpio L. induces proliferation of myonuclei in fast muscle fibres and slow muscle fibre hypertrophy

Endurance exercise training (2·4–2·6 body lengths s⁻¹, 16 h day⁻¹ for 28 days) resulted in an increased density of myonuclei in fast muscle fibres relative to tank rested controls and induced slow muscle fibre hypertrophy. The results indicate that exercise is a powerful stimulus for the proliferation of myogenic cells and nuclear accretion.     

Effects of common carp (Cyprinus carpio) on macrophytes and invertebrate communities in a shallow lake

1. We performed two field experiments using different cage sizes to determine the direct and indirect effects of carp on macrophytes and invertebrate community composition in a shallow lake. 2. The presence of carp produced a significant decrease in macrophyte abundance, changes in species composition and decreased abundance and diversity of invertebrates in small (2.5 × 2.5 × 2.0 m) cages. In large exclosures (15 × 5 m), only macrophyte stem length was significantly affected by carp. 3. There was considerable variation in the macrophyte and invertebrate responses to carp on different sides of the lake in the large exclosures, suggesting that wind and wave action are also important variables affecting macrophyte growth and persistence. 4. The data suggest that carp can significantly affect species abundance and diversity of macrophytes and some macroinvertebrates.     

寄生在鲤鱼及草(鲩)鱼的鱊头槽绦虫的多样性

研究了寄生于鲤鱼及草(鲩)鱼的鱊头槽绦虫(Bothriocephalus acheiloghathi)的多样性.作者在1986-2000年收集材料,遍及中国19个省及自治区.在江苏等5省只收集到其它寄生虫的材料,故结果未列入附录1和2.研究结果表明,鲤鱼及草鱼的寄生鱊头槽绦虫的地理分布截然不同.寄生于鲤鱼的鱊头槽绦虫分布于黄河水系的西北地区及黑龙江水系的东北各省及长江上游的四川、云南和贵州,南方各省的鲤鱼不感染这种绦虫.寄生于草鱼的鱊头槽绦虫分布于沿珠江水系的广东、广西及闽江水系的福建,感染池塘的幼龄草鱼,天然水体中未发现感染阳性的草鱼.交义感染试验表明,寄生在这两种鲤科鱼类的头槽绦虫有极强的宿主特异性,草鱼感染的头槽绦虫一年内大部分时间排出发育完全的胚胎卵,而鲤鱼感染的头槽绦虫排出的虫卵多为早期分裂卵,甚至在盛夏,水温在28℃-30℃的情况下也无例外.虫卵发育程度不同,卵的孵化期也有差异.在同等温度28℃-29℃时,草鱼头槽绦虫虫卵的孵化期为1.69±0.17 d;鲤鱼的头槽绦虫虫卵的孵化期为3.98±0.3 d.此外,种群结构也有明显区别,草鱼的头槽绦虫在繁殖季节,体长＜1 cm的幼虫占种群的主体,年终时绦虫全部从宿主体内消失,生活周期从初染至消敛约1年;鲤鱼的头槽绦虫主体全年皆为孕节成虫,在Ⅱ龄商品鱼中继续繁殖.本研究表明,鲤鱼及草鱼的寄生鱊头槽绦虫显示的多样性是因长期适应不同生活环境从而演化为两个不同的亚种[动物学报 53(3):470-480,2007].     

Losses of mammals (Mammalia) and birds (Aves) on roads in the Slovak part of the Danube Basin

Mortality of mammals and birds due to traffic accidents was monitored in the Slovak part of the Danube Basin from September 2000 to December 2002. Monitored road length was 32 km. The route was inspected by vehicle or on foot 709 times (total of 22,677 km inspected). A total of 3,009 animal carcasses were found. Of these, 45.5% were mammals and 54.5% were birds. Mammals included hamsters (35.7% of killed mammals), mice (14%), brown hares (13.2%), hedgehogs (8.7%), voles (8.5%), Norway rats (6.1%), domestic cats (4.4%) red foxes (3%), polecats (1.9%), weasels (1.2%), and less than 1% other species. Of the bird carcasses, 42.4% were sparrows, 7.6% pheasants, 5.6% swallows, 5.4% long-eared owls, 4.6% martins, 4.4% collared turtle doves, 4.1% domestic pigeons, and 3.2% fieldfares. On average, 3.6 animal carcasses were found per 1 km of monitored route per month. Seasonal mortality differed both in absolute numbers and with respect to the number of species involved. Losses were highest in summer and lowest in winter. Losses in brown hares reached on average 15.5% (maximum 75%), in roe deer 18.8% (maximum 80%) and in pheasants 3.5% (maximum 22%) of the annual bag. Annual financial losses in the study area with regard to game species were 1.9 million Slovakian crowns. In the district of Galanta, to which the study area belongs, on average 21.4 traffic accidents with game occurred annually; most of these were caused by roe deer. Damage to property amounted to 880,000 Slovakian crowns per year.     

Minding the gap: frequency of indels in mtDNA control region sequence data and influence on population genetic analyses

Insertions and deletions (indels) result in sequences of various lengths when homologous gene regions are compared among individuals or species. Although indels are typically phylogenetically informative, occurrence and incorporation of these characters as gaps in intraspecific population genetic data sets are rarely discussed. Moreover, the impact of gaps on estimates of fixation indices, such as F(ST), has not been reviewed. Here, I summarize the occurrence and population genetic signal of indels among 60 published studies that involved alignments of multiple sequences from the mitochondrial DNA (mtDNA) control region of vertebrate taxa. Among 30 studies observing indels, an average of 12% of both variable and parsimony-informative sites were composed of these sites. There was no consistent trend between levels of population differentiation and the number of gap characters in a data block. Across all studies, the average influence on estimates of PhiST was small, explaining only an additional 1.8% of among population variance (range 0.0-8.0%). Studies most likely to observe an increase in PhiST with the inclusion of gap characters were those with < 20 variable sites, but a near equal number of studies with few variable sites did not show an increase. In contrast to studies at interspecific levels, the influence of indels for intraspecific population genetic analyses of control region DNA appears small, dependent upon total number of variable sites in the data block, and related to species-specific characteristics and the spatial distribution of mtDNA lineages that contain indels.     

Growth and energy budget of F2'all-fish' growth hormone gene transgenic common carp

The growth and energy budget for F₂‘all‐fish’ growth hormone gene transgenic common carp Cyprinus carpio of two body sizes were investigated at 29·2° C for 21 days. Specific growth rate, feed intake, feed efficiency, digestibility coefficients of dry matter and protein, gross energy intake (I_E), and the proportion of I_E utilized for heat production (H_E) were significantly higher in the transgenics than in the controls. The proportion of I_E directed to waste products [faecal energy (F_E) and excretory energy loss (Z_E+U_E) where Z_E is through the gills and U_E through the kidney], and the proportion of metabolizable energy (M_E) for recovered energy (R_E) were significantly lower in the transgenics than in the controls. The average energy budget equation of transgenic fish was as follows: 100 I_E= 19·3 F_E+ 6·0 (Z_E+U_E) + 45·2 H_E+ 29·5 R_E or 100 M_E= 60·5 H_E+ 39·5 R_E. The average energy budget equation of the controls was: 100 I_E= 25·2 F_E+ 7·4 (Z_E+U_E) + 35·5 H_E+ 31·9 R_E or 100 M_E= 52·7 H_E+ 47·3 R_E. These findings indicate that the high growth rate of ‘all‐fish’ transgenic common carp relative to their non‐transgenic counterparts was due to their increased feed intake, reduced lose of waste productions and improved feed efficiency. The benefit of the increased energy intake by transgenic fish, however, was diminished by their increased metabolism.     

鲤鱼体长性状的QTL定位及其遗传效应分析

以大头鲤/荷包红鲤抗寒品系的重组自交系群体及其遗传连锁图谱, 利用Windows Map Manager 2.0的标记回归法进行QTL单标记定位分析和复合区间作图法进行QTL区间检测, 通过置换实验(1 000次重复)确定连锁群显著性水平阈值。在体长性状的标记回归研究中, 共7个标记达到显著水平(P<0.01), 对性状的贡献率为14.00%～27.00%, 其中3个标记达到极显著水平(P<0.001)。HLJ534, HLJ319, HLJ370座位可能与影响鲤鱼体长性状的主效基因连锁。在体长性状的QTL区间定位研究中, 共6个QTL达到连锁群显著水平(P=0.05), 对性状的贡献率为11.33.%～23.12%, 其中2个达到连锁群极显著性水平(P=0.01), 它们的加性效应方向并不一致。HLJ190-HLJ497区间和HLJ479-HLJ483区间是影响鲤鱼体长性状的主效QTL区间。     

A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers

Common carp (Cyprinus carpio) is an important fish for aquaculture, but genomics of this species is still in its infancy. In this study, a linkage map of common carp based on Amplified Fragment Length Polymorphism (AFLP) and microsatellite (SSR) markers has been generated using gynogenetic haploids. Of 926 markers genotyped, 151 (149 AFLPs, two SSRs) were distorted and eliminated from the linkage analyses. A total of 699 AFLP and 20 microsatellite (SSR) markers were assigned to the map, which comprised 64 linkage groups and covered 5506.9 cM Kosambi, with an average interval distance of 7.66 cM Kosambi. The normality tests on interval map distances showed a non‐normal marker distribution. Visual inspection of the map distance distribution histogram showed a cluster of interval map distances on the left side of the chart, which suggested the occurrence of AFLP marker clusters. On the other hand, the lack of an obvious cluster on the right side showed that there were a few big gaps which need more markers to bridge. The correlation analysis showed a highly significant relatedness between the length of linkage group and the number of markers, indicating that the AFLP markers in this map were randomly distributed among different linkage groups. This study is helpful for research into the common carp genome and for further studies of genetics and marker‐assisted breeding in this species.     

Biochemical genetic comparison of the Chinese and European races of the common carp

An electrophoretic survey of the common carp revealed 33 loci. Nine were found to be polymorphic including two phosphoglucose isomerase loci, a phosphoglucomutase locus, three esterase loci, a lactate dehydrogenase locus, a malate dehydrogenase locus, and transferrin. Five of these polymorphic loci are reported for the first time, the two phosphoglucose isomerase loci, a phosphoglucomutase locus and two of the three esterase loci. Differences in allele frequencies between the European and Chinese races were found at most loci.