Gymnocranius obesus,a new large-eye seabream from the Coral Triangle

Two previously recorded new species of the large-eye seabream genus Gymnocranius (Gymnocranius sp. D and Gymnocranius sp. E) remain undescribed. Here we describe Gymnocranius sp. E as Gymnocranius obesus sp. nov. This new species is morphologically distinct from all other known species under Gymnocranius by the following combination of characters: relatively deep body, with ratio of standard length to body depth 2.2–2.4; protruding large eye, with eye diameter about equal to or slightly larger than inter-orbital width; caudal fin moderately forked; no blue spots or wavy blue lines on cheek and snout in adults; fourth transversal dark bar on flank running from the sixth spine of the dorsal fin to the origin of the anal fin; anal, caudal and dorsal fins drab with yellowish to yellow margins. Gymnocranius obesus sp. nov. is distinct from G. griseus, with which it has been previously confused by a relatively larger head, scales above lateral line without dark basal patch, and a smaller number of front scales on the dorsal side of the head. Gymnocranius obesus sp. nov. is genetically distinct from its closest known relative, Gymnocranius sp. D by 104 diagnostic nucleotide characters, which translates into a 9.6% sequence divergence at the mitochondrial cytochrome b gene. Gymnocranius obesus sp. nov. reaches a length of at least 295 mm. Its distribution, from the Ryukyu Islands to Bali, including Taiwan and the Flores Sea, mostly coincides with the western half of the Coral Triangle.     

Geometric morphometrics as a tool for identifying emperor fish (Lethrinidae) larvae and juveniles

The aim of this study was to evaluate the efficiency of geometric morphometrics for describing the body shape of fish larvae and juveniles, and identifying them to species, in comparison with traditional linear measurements. Species of emperor fishes (Perciformes: Lethrinidae, genus Lethrinus) were chosen as the model group, as the late larval and early juvenile stages in this genus are particularly difficult to identify. Forty‐five individuals of different species of Lethrinus were collected from the south‐western lagoon of New Caledonia between May 2005 and March 2006. The individuals were first identified to species by their partial cytochrome‐b gene sequence. They were then morphologically characterized using eight linear measurements and 23 landmarks recorded on digital photographs. Except for a small proportion of individuals, geometric morphometrics gave better results to distinguish the different species than linear measurements. A ‘leave one out’ approach confirmed the nearly total discrimination of recently settled Lethrinus genivittatus and Lethrinus nebulosus, whereas traditional identification keys failed to distinguish them. Therefore, geometric morphometrics is a promising tool for identifying fish larvae and juveniles to species. An effective approach would require building image databases of voucher specimens associated with their DNA barcodes. These images could be downloaded by the operator and processed with the specimens to be identified.     

Gymnocranius superciliosus and Gymnocranius satoi, two new large-eye breams (Sparoidea: Lethrinidae) from the Coral Sea and adjacent regions

Two related perciform fish species of the subfamily Monotaxinae (Sparoidea: Lethrinidae) Gymnocranius superciliosus sp. nov. and Gymnocranius satoi sp. nov. are described from specimens and tissue samples from the Coral Sea and adjacent regions. G. superciliosus sp. nov. is distinct from all other known Gymnocranius spp. by the following combination of characters: body elongated (depth 2.7–3.1 in standard length), caudal fin moderately forked with a subtle middle notch, its lobes slightly convex inside, distinctive blackish eyebrow, snout and cheek with blue speckles, and dorsal, pectoral, anal and caudal fins reddish. G. satoi sp. nov. is the red-finned ‘Gymnocranius sp.’ depicted in previous taxonomic revisions. While colour patterns are similar between the two species, G. satoi sp. nov. is distinct from G. superciliosus sp. nov. by the ratio of standard length to body depth (2.4–2.5 vs. 2.7–3.1) and by the shape of the caudal fin, which is more shallowly forked, its lobes convex inside and their extremities rounded. The two species are genetically distinct from each other and they are genetically distinct from G. elongatus, G. euanus, G. grandoculis, and G. oblongus sampled from the Coral Sea and adjacent regions.     

Two new genera and species of cystidicolids (Nematoda,Cystidicolidae) from marine fishes off New Caledonia

Two new nematode species of the family Cystidicolidae, each representing a new genus, were recovered from marine perciform fishes off New Caledonia, South Pacific: Ascarophisnema tridentatum n. gen., n. sp. from the stomach of the Japanese large-eye bream, Gymnocranius euanus (Günther) (Lethrinidae) and Metabronemoides mirabilis n. gen., n. sp. from the stomach of the painted sweetlip, Diagramma pictum (Thunberg) (Haemulidae). Ascarophisnema is characterized mainly by its cephalic structures (presence of two tooth-like projections on either side of the base of each pseudolabium, dorsal and ventral inner extensions of each pseudolabium recurved laterally in apical view, and submedian sublabia fused together dorsally and ventrally) and the presence of trident-like deirids, and Metabronemoides by its unique cephalic structures (presence of one dorsal and one ventral labium and four large dorsolateral and ventrolateral labia, and absence of sublabia). Rhabdochona gymnocranius (considered a species inquirenda) is provisionally transferred to the former genus as Ascarophisnema gymnocranius (Yamaguti, 1935) n. comb. To date, a total of seven species of cystidicolids are reported from marine fishes off New Caledonia.     

Gymnocranius oblongus, a new large-eye bream species from New Caledonia (Teleostei: Lethrinidae)

Gymnocranius oblongus is described as a new species of the subfamily Monotaxinae (Sparoidea: Lethrinidae), a group of commercially important fishes distributed throughout the Indo-West Pacific, from six specimens collected in New Caledonia. It is characterized by an oblong, fusiform body, slightly rounded snout, elongate tail with rounded tips and sub-horizontal, wavy blue lines or dashes on snout and cheeks. It is distinct from sympatric G. grandoculis by a more slender body which is also more symmetrical dorso-ventrally and a more elongated caudal fin. Both mitochondrial-DNA and nuclear-DNA markers provide a genetic basis to the distinction of G. oblongus from G. grandoculis.     

Three new species, Lamellodiscus tubulicornis n. sp., L. magnicornis n. sp. and L. parvicornis n. sp. (Monogenea: Diplectanidae) from Gymnocranius spp. (Lethrinidae: Monotaxinae) off New Caledonia, with the proposal of the new morphological group ‘tubulicornis’ within Lamellodiscus Johnston & Tiegs, 1922

Three new species of Lamellodiscus are described from four (including two undescribed) species of Gymnocranius off New Caledonia, South Pacific. All three species have a similar body anatomy and morphology of the haptoral hard parts and are distinguished on the basis of the male copulatory organ (MCO). Lamellodiscus tubulicornis n. sp. (type-host: G. grandoculis; other host: Gymnocranius sp. B) has an MCO with a tube and horn; L. magnicornis n. sp. (type-host: G. grandoculis; other hosts: G. euanus, Gymnocranius sp. A and Gymnocranius sp. B) has an MCO with a long horn and a membrane; L. parvicornis n. sp. (type-host: G. euanus; other hosts: G. grandoculis and Gymnocranius sp. B) has an MCO with a small horn and a membrane. Lamellodiscus epsilon Yamaguti, 1968 is redescribed based on the type-specimens (from Monotaxis grandoculis off Hawaii). Lamellodiscus sp. is recorded from Gnathodentex aureolineatus off New Caledonia. All these five species have lamellodiscs that exhibit a unique characteristic: the second lamella forms an almost closed circle, in contrast to all other described species of Lamellodiscus in which the second lamella has the form of one or two crescents. Lamellodiscus spp. are usually classified in two groups, the ‘ignoratus’ and ‘elegans’ groups, according to the structure of the lamellodisc; we propose a new ‘tubulicornis’ group for these five species. In addition to their lamellodisc structure, species of the tubulicornis group are also characterised by their egg (elongate in contrast to tetrahedral in the two other groups) and their hosts (monotaxine lethrinids as opposed to mainly sparids). The generic diagnosis of Lamellodiscus given by Amine & Euzet (2005) is amended to include species with elongate eggs.     

Helicopsyche trispina sp. n. (Trichoptera,Helicopsychidae) from New Caledonia

Helicopsyche trispina sp. n. is described from Grande Terre, New Caledonia, based on pharate males, larvae and pupae. The species appears to belong to the monophyletic New Caledonian Helicopsyche clade.     

Species of Calydiscoides Young, 1969 (Monogenea: Diplectanidae) from lethrinid fishes, with the redescription of all of the type-specimens and the description of C. euzeti n. sp. from Lethrinus rubrioperculatus and L. xanthochilus off New Caledonia

Type-specimens of all known species of Calydiscoides Young, 1969 from lethrinids, namely C. australis Young, 1969 (type-species), C. difficilis (Yamaguti, 1953) Young, 1969, C. duplicostatus (Yamaguti, 1953) Young, 1969, C. rohdei Oliver, 1984 and C. gussevi Oliver, 1984, were re-examined; the male copulatory organs (MCO) of the type-specimens are figured for comparison. Two groups are distinguished within Calydiscoides: the 'difficilis' group, with a massive MCO (C. difficilis and C. rohdei), and the 'australis' group, with a branched MCO (C. australis, C. duplicostatus and C. gussevi). Species of Calydiscoides were found in seven species of Lethrinus (Lethrinidae) off New Caledonia, South Pacific. C. australis and C. gussevi from L. miniatus, their type-host, and C. rohdei from L. atkinsoni, its type-host, are re-described from New Caledonian specimens; all were previously known only from off eastern Australia and are new geographical records for New Caledonia. C. euzeti n. sp. is described from specimens collected from L. rubrioperculatus (type-host) and L. xanthochilus off New Caledonia. Specimens from the two hosts have slightly different measurements of the haptoral hard-parts but a similar morphology of the MCO. The new species belongs to the 'australis' group and is characterised by its MCO, which is 70-83 mum in length, elongate in shape with a characteristic anterior curved whip.     

Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks

Environmental DNA (eDNA) techniques refer to utilizing the organisms’ DNA extracted from environment samples to genetically identify target species without capturing actual organisms. eDNA metabarcoding via high‐throughput sequencing can simultaneously detect multiple fish species from a single water sample, which is a powerful tool for the qualitative detection and quantitative estimates of multiple fish species. However, sequence counts obtained from eDNA metabarcoding may be influenced by many factors, of which primer bias is one of the foremost causes of methodological error. The performance of 18 primer pairs for COI, cytb, 12S rRNA, and 16S rRNA mitochondrial genes, which are all frequently used in fish eDNA metabarcoding, were evaluated in the current study. The ribosomal gene markers performed better than the protein‐coding gene markers during in silico screening, resulting in higher taxonomic coverage and appropriate barcode lengths. Four primer pairs—AcMDB07, MiFish‐U, Ve16S1, and Ve16S3—designed for various regions of the 12S and 16S rRNA genes were screened for tank metabarcoding in a case study targeting six freshwater fish species. The four primer pairs were able to accurately detect all six species in different tanks, while only MiFish‐U, Ve16S1, and Ve16S3 revealed a significant positive relationship between species biomass and read count for the pooled tank data. The positive relationship could not be found in all species within the tanks. Additionally, primer efficiency differed depending on the species while primer preferential species varied in different fish assemblages. This case study supports the potential for eDNA metabarcoding to assess species diversity in natural ecosystems and provides an alternative strategy to evaluate the performance of candidate primers before application of eDNA metabarcoding in natural ecosystems.     

Integrative taxonomy of New Caledonian beetles: species delimitation and definition of the Uloma isoceroides species group (Coleoptera,Tenebrionidae, Ulomini), with the description of four new species

New Caledonia is an important biodiversity hotspot with much undocumented biodiversity, especially in many insect groups. Here we used an integrative approach to explore species diversity in the tenebrionid genus Uloma (Coleoptera, Tenebrionidae, Ulomini), which encompasses about 150 species, of which 22 are known from New Caledonia. To do so, we focused on a morphologically homogeneous group by comparing museum specimens with material collected during several recent field trips. We also conducted molecular phylogenetic analyses based on a concatenated matrix of four mitochondrial and three nuclear genes for 46 specimens. The morphological study allowed us to discover and describe four new species that belong to the group of interest, the Uloma isoceroides group. Molecular analyses confirmed the species boundaries of several of the previously described species and established the validity of the four new species. The phylogenetic analyses also provided additional information on the evolutionary history of the group, highlighting that a species that was thought to be unrelated to the group was in fact a member of the same evolutionary lineage. Molecular species delimitation confirmed the status of the sampled species of the group and also suggested some hidden (cryptic) biodiversity for at least two species of the group. Altogether this integrative taxonomic approach has allowed us to better define the boundaries of the Uloma isoceroides species group, which comprises at least 10 species: Uloma isoceroides (Fauvel, 1904), Uloma opacipennis (Fauvel, 1904), Uloma caledonica Kaszab, 1982, Uloma paniei Kaszab, 1982, Uloma monteithi Kaszab, 1986, Uloma robusta Kaszab, 1986, Uloma clamensae sp. n., Uloma condaminei sp. n., Uloma jourdani sp. n., and Uloma kergoati sp. n. We advocate more studies on other New Caledonian groups, as we expect that much undocumented biodiversity can be unveiled through the use of similar approaches.     

Cucullanid nematodes (Nematoda: Cucullanidae) from deep-sea marine fishes off New Caledonia,including <Emphasis Type="Italic">Dichelyne etelidis</Emphasis> n. sp.

Three nematode species of the family Cucullanidae, intestinal parasites of marine perciform fishes, are reported from off New Caledonia: Cucullanus bourdini Petter & Le Bel, 1992 from the crimson jobfish Pristipomoides filamentosus (Valenciennes) and the goldflag jobfish Pristipomoides auricilla (Jordan, Evermann & Tanaka) (new host record) (both Lutjanidae); Dichelyne etelidis n. sp. from the deep-water red snapper Etelis carbunculus Cuvier (type-host) and the deep-water longtail red snapper Etelis coruscans Valenciennes (both Lutjanidae); and Dichelyne sp. (only one female) from the trumpet emperor Lethrinus miniatus (Forster) (Lethrinidae). Detailed light and electron microscopical studies revealed in C. bourdini some taxonomically important, previously unreported features, such as the location of the excretory pore, nature of the vulva and the size of fully-developed eggs. The new species, D. etelidis, is characterised mainly by the length of the spicules (462–748 μm), a single intestinal caecum, the location of the deirids and excretory pore, the arrangement of the genital papillae and the host group.     

A new species of Benedenia Diesing, 1858 (Monogenea: Capsalidae) parasitic on Lethrinus haematopterus Temminck & Schlegel (Perciformes: Lethrinidae) from Japan

Systematic Parasitology - A new species of capsalid monogenean, Benedenia armata n. sp., is described from Lethrinus haematopterus Temminck &amp; Schlegel (Perciformes: Lethrinidae) from off...     

Oribatid mites (Acari,Oribatida) from riverine environments of some islands in Oceania

A checklist of identified oribatid mite taxa from riverine freshwater environments from six islands in Polynesia (New Caledonia, Tahiti, Moorea, Rurutu, Tubuai, Raiatea) is presented; 18 species, 16 genera and eight families were recorded. Trhypochthoniellus longisetus (Berlese, 1904) and Trimalaconothrus albulus Hammer, 1972 prevailed on distribution. Fortuynia smiti sp. n. (Fortuyniidae) is described from New Caledonia. The new speciesis morphologically most similar to Fortuynia marina Hammen, 1960 from New Guinea, but it differs from the latter by the longer notogastral setae dm, lm, c₂, p₁, epimeral setae 3b and adanal setae ad₁ and the presence of prodorsal lateral ridges.     

Comparative phylogeography of the western Indian Ocean reef fauna

Assessing patterns of connectivity at the community and population levels is relevant to marine resource management and conservation. The present study reviews this issue with a focus on the western Indian Ocean (WIO) biogeographic province. This part of the Indian Ocean holds more species than expected from current models of global reef fish species richness. In this study, checklists of reef fish species were examined to determine levels of endemism in each of 10 biogeographic provinces of the Indian Ocean. Results showed that the number of endemic species was higher in the WIO than in any other region of the Indian Ocean. Endemic species from the WIO on the average had a larger body size than elsewhere in the tropical Indian Ocean. This suggests an effect of peripheral speciation, as previously documented in the Hawaiian reef fish fauna, relative to other sites in the tropical western Pacific. To explore evolutionary dynamics of species across biogeographic provinces and infer mechanisms of speciation, we present and compare the results of phylogeographic surveys based on compilations of published and unpublished mitochondrial DNA sequences for 19 Indo-Pacific reef-associated fishes (rainbow grouper Cephalopholis argus, scrawled butterflyfish Chaetodon meyeri, bluespot mullet Crenimugil sp. A, humbug damselfish Dascyllus abudafur/Dascyllus aruanus, areolate grouper Epinephelus areolatus, blacktip grouper Epinephelus fasciatus, honeycomb grouper Epinephelus merra, bluespotted cornetfish Fistularia commersonii, cleaner wrasse Labroides sp. 1, longface emperor Lethrinus sp. A, bluestripe snapper Lutjanus kasmira, unicornfishes Naso brevirosris, Naso unicornis and Naso vlamingii, blue-spotted maskray Neotrygon kuhlii, largescale mullet Planiliza macrolepis, common parrotfish Scarus psicattus, crescent grunter Terapon jarbua, whitetip reef shark Triaenodon obesus) and three coastal Indo-West Pacific invertebrates (blue seastar Linckia laevigata, spiny lobster Panulirus homarus, small giant clam Tridacna maxima). Heterogeneous and often unbalanced sampling design, paucity of data in a number of cases, and among-species discrepancy in phylogeographic structure precluded any generalization regarding phylogeographic patterns. Nevertheless, the WIO might have been a source of haplotypes in some cases and it also harboured an endemic clade in at least one case. The present survey also highlighted likely cryptic species. This may eventually affect the accuracy of the current checklists of species, which form the basis of some of the recent advances in Indo-West Pacific marine ecology and biogeography.     

Cranial morphometrics and mitochondrial DNA sequences distinguish cryptic species of the longface emperor (Lethrinus olivaceus), an emblematic fish of Indo-West Pacific coral reefs

Range-wide morphometric variability (cranial measurements) and genetic variability (nucleotide sequences of the cytochrome b gene) were investigated in the longface emperor, Lethrinus olivaceus (Lethrinidae), an emblematic large predatory fish of Indo-West Pacific coral reefs. Two cranial morphotypes were observed, one present from the Indian Ocean to the Coral Triangle and the other one, from the Coral Triangle to the western Central Pacific. The two morphotypes are concordant with reciprocally monophyletic mitochondrial lineages separated by 9.5% net nucleotide distance. These results suggest an old evolutionary history for L. olivaceus, which consists of two distinct species (Lethrinus sp. A in the Indian Ocean and Coral Triangle, Lethrinus sp. B in the western Pacific Ocean), whose distribution ranges meet or overlap in the eastern part of the Coral Triangle, in Taiwan and in West Papua. Lethrinus sp. A comprises two distinct mitochondrial lineages separated by 1.7% net nucleotide distance, one exclusive to the populations from the Indian Ocean, the other exclusive to Coral Triangle populations. The latter observation might be explained by vicariance, whereby the two lineages have been isolated from one another on either side of the Sunda Shelf because of low sea level in the Pleistocene. To clarify the nomenclature of this species complex, we recommend sequencing a fragment of the cytochrome b gene of the holotypes of L. olivaceus and of its first junior synonyms L. rostratus and L. waigiensis.     

Comparative Sequence Analysis of the Non-Protein-Coding Mitochondrial DNA of Inbred Rat Strains

The proper function of mammalian mitochondria necessitates a coordinated expression of both nuclear and mitochondrial genes, most likely due to the co-evolution of nuclear and mitochondrial genomes. The non-protein coding regions of mitochondrial DNA (mtDNA) including the D-loop, tRNA and rRNA genes form a major component of this regulated expression unit. Here we present comparative analyses of the non-protein-coding regions from 27 Rattus norvegicus mtDNA sequences. There were two variable positions in 12S rRNA, 20 in 16S rRNA, eight within the tRNA genes and 13 in the D-loop. Only one of the three neutrality tests used demonstrated statistically significant evidence for selection in 16S rRNA and tRNA-Cys. Based on our analyses of conserved sequences, we propose that some of the variable nucleotide positions identified in 16S rRNA and tRNA-Cys, and the D-loop might be important for mitochondrial function and its regulation.     

A new species of the Melanesian genus Kanaliella (Coleoptera: Cleridae)

Kanaliella balkorum n. sp., a new species of checkered beetles (Cleridae) from New Caledonia is described and figured.urn:lsid:zoobank.org:pub:FA16DD22-2C83-4677-8B1C-E3A317BF150E.     

Bucephaline digeneans (Bucephalidae) in <Emphasis Type="Italic">Sphyraena putnamae</Emphasis> Jordan &; Seale (Sphyraenidae) from the lagoon off New Caledonia

Lethrinitrema gibbus n. g., n. sp. and L. dossenus n. sp. are described from the fish Lethrinus rubrioperculatus Sato collected off New Caledonia, South Pacific. Members of Lethrinitrema n. g. (Ancyrocephalidae) are characterised by having two pyriform haptoral reservoirs and ventral anchors with lateral grooves. The elongate tubular distal end of each reservoir bifurcates, draining into a superficial lateral groove on each side of the ventral anchors. The haptoral reservoirs are postulated to store secretory products which assist in attachment to the host. Lethrinitrema spp. also possess tandem gonads, a male copulatory organ without an accessory piece or with thinly sclerotised accessory piece, and a dextrolateral, non-sclerotised vaginal bulb. The two new species have small, poorly demarcated haptors with small haptoral armament and a crown-like piece on the tip of the inner root of the ventral anchors. They differ from each other in the shape and size of the ventral bar and male copulatory organ (40–45 μm in length in L. gibbus vs 24–30 μm in L. dossenus). Three other species, previously included in Haliotrema Johnston & Tiegs, 1922, are transferred to Lethrinitrema, i.e. L. chrysostomi (Young, 1968) n. comb., L. fleti (Young, 1968) n. comb. (both briefly redescribed from paratypes) and L. lethrini (Yamaguti, 1937) n. comb. All species of Lethrinitrema parasitise Lethrinus spp. (Lethrinidae), and there is evidence for the existence of further Lethrinitrema spp. on Lethrinus spp. in the Indo-Pacific region.     

Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils

The South African invasive legume Dipogon lignosus (Phaseoleae) produces nodules with both determinate and indeterminate characteristics in New Zealand (NZ) soils. Ten bacterial isolates produced functional nodules on D. lignosus. The 16S ribosomal RNA (rRNA) gene sequences identified one isolate as Bradyrhizobium sp., one isolate as Rhizobium sp. and eight isolates as Burkholderia sp. The Bradyrhizobium sp. and Rhizobium sp. 16S rRNA sequences were identical to those of strains previously isolated from crop plants and may have originated from inocula used on crops. Both 16S rRNA and DNA recombinase A (recA) gene sequences placed the eight Burkholderia isolates separate from previously described Burkholderia rhizobial species. However, the isolates showed a very close relationship to Burkholderia rhizobial strains isolated from South African plants with respect to their nitrogenase iron protein (nifH), N-acyltransferase nodulation protein A (nodA) and N-acetylglucosaminyl transferase nodulation protein C (nodC) gene sequences. Gene sequences and enterobacterial repetitive intergenic consensus (ERIC) PCR and repetitive element palindromic PCR (rep-PCR) banding patterns indicated that the eight Burkholderia isolates separated into five clones of one strain and three of another. One strain was tested and shown to produce functional nodules on a range of South African plants previously reported to be nodulated by Burkholderia tuberum STM678^T which was isolated from the Cape Region. Thus, evidence is strong that the Burkholderia strains isolated here originated in South Africa and were somehow transported with the plants from their native habitat to NZ. It is possible that the strains are of a new species capable of nodulating legumes.