Relations between bacterioplankton,heterotrophic nanoflagellates,and virioplankton in the littoral zone of a large plain reservoir: Impact of bird colonies

Interactions of the main components of microbial planktonic food web (bacteria, heterotrophic nanoflagellates, and viruses) were studied in a protected overgrown littoral zone of the Rybinsk Reservoir (Upper Volga). The effect of colonial bird settlements (the Laridae family) on these processes was determined. The following systems exhibited significant negative correlations: “heterotrophic nanoflagellates–large rod-shaped bacteria” (“predator–prey”), “viruses-bacteriophages–bacterial products” (“parasite–host”) and “heterotrophic nanoflagellates–viruses-bacteriophages”. Relations between biotic factors controlling bacterial development were more pronounced outside the zone affected by colonial bird settlements. Near the bird colony the role of viruses in mortality of planktonic bacteria increased. Reproduction of bacterial cells accelerated in response to the increase in feeding activity of heterotrophic nanoflagellates. Virusesbacteriophages and heterotrophic nanoflagellates probably eliminate different targets until medium-sized cells become predominant in the bacterial community. Then heterotrophic nanoflagellates consume bacterial cells infected with viruses.     

Influence of organic compounds and light limitation on the growth rate of estuarine benthic diatoms

Ten species of benthic diatoms from the Eems-Dollard estuary were grown in axenic cultures under various combinations of irradiance and supply of organic substrates. Six species were capable of growth in the dark on yeast extract, casamino acids, or glucose. Four of these species grew best in the presence of glucose, whereas the growth of the other two species was supported only by yeast extract and casamino acids. The light limited growth rate of only those species that were also capable of heterotrophic growth in the dark was increased by organic substrates. The rate of this “mixed” growth together with the absence of a lag-phase upon change from autotrophic to heterotrophic conditions indicates the nutritional versatility of these diatom species. A positive relation between the organic matter content of the natural habitat and the heterotrophic capacities of the diatom species is suggested. All species with heterotrophic capacities were isolated from muddy sediments, whereas two species isolated from a sandflat seem to be obligately autotrophic. Also two species from muddy sediments apparently had no heterotrophic capacities. The cells of the six species with heterotrophic capacities differed from those of the four species without such capacities in their higher surface to volume ratio.     

Approche discriminante de contributions de différents échelons microplanctoniques aux mesures globales d'ETS dans des échantillons de mer. b. Bacteria

Discriminating approach of various microplanktonic-stage contributions to whole electron transport system (ETS) measurements in sea-water sampless. b. Bacateria Data obtained from cultures of natural bacterial populations were applied to various water samples in order to determine both the phytoplanktonic and bacterial contributions to whole ETS water-sample measurements. The bacterial part was estimated both by cell enumerations and HPLC muramic-acid measurements and the phytoplankton contribution by enumeration and chlorophyll levels. An appropriate first-order equation is adequate to low carbon content samples but must be corrested for highly organic loaded samples in order to obtain a better adjustment between the sum of the “estimated” phytoplanktonic and bacterial ETS and the really-measured ETS concentrations in the water samples.     

Structure and functioning of the microbial loop in a boreal reservoir

The abundance and biomass of the main components of the microbial plankton food web (“microbial loop”)—heterotrophic bacteria, phototrophic picoplankton and nanoplankton, heterotrophic nanoflagellates, ciliates and viruses, production of phytoplankton and bacterioplankton, bacterivory of nanoflagellates, bacterial lysis by viruses, and the species composition of protists—have been determined in summer time in the Sheksna Reservoir (the Upper Volga basin). A total of 34 species of heterotrophic nanoflagellates from 15 taxa and 15 species of ciliates from 4 classes are identified. In different parts of the reservoir, the biomass of the microbial community varies from 26.2 to 64.3% (on average 45.5%) of the total plankton biomass. Heterotrophic bacteria are the main component of the microbial community, averaging 63.9% of the total microbial biomass. They are the second (after the phytoplankton) component of the plankton and contribute on average 28.6% to the plankton biomass. The high ratio of the production of heterotrophic bacteria to the production of phytoplankton indicates the important role of bacteria, which transfer carbon of allochthonous dissolved organic substances to a food web of the reservoir.     

Ecological aspects of the surface microlayer. I. ATP,ADP, AMP contents,and energy charge ratios of microplanktonic communities

Forty samples of both the surface microlayer (60 to 100 μm) and underlying waters (0.5 m), were collected in a neritic area (Gulf of Marseilles, France) and their microplanktonic composition studied by adenosine, pigment, and organic carbon content. In the surface film, the accumulation of the living fraction was weaker than for inert organic matter; this phenomenon was more marked in the hydrological structures which are named “slicks”. The relationship between nucleotides and chlorophyll provided evidence for a substantial participation of heterotrophic organisms, such as bacteria, in the living biomass of the surface film. In this layer, lower values of the energy charge, as compared with those of water from 0.5 m may indicate the presence of stressed microorganisms. Nevertheless, as was shown by ATP data, part of hyponeustonic microbiomass was alive, and not killed by severe ecological conditions of this biotope. High AMP concentrations may be partially explained by a contribution of non-living organic matter, as was proved by the high enrichment factor for this adenosine form, higher than those of ATP and ADP, closer to those of phaeophytins, degrading products from chlorophylls. Adenylic nucleotide measurements in the paniculate matter of the surface microlayer, as their ratios and relations with chlorophyll, seem to be a practical tool for investigating the sea-air interface, from an ecological point of view.     

Assimilation de composés organiques dissous dans le secteur antarctique de l'Ocean Indien.

Uptake of Dissolved Organic Compounds in the Antarctic Sector of the Indian Ocean The kinetic approach was used to determine the heterotrophic potential of the Indian Antarctic waters for three dissolved organic compouds: glucose, proline and glutamate. Variations with depth and latitude are discussed.     

Free oxygen and evolutionary progress.

A conception of the origin of multicellularity and respiration is presented. It is assumed that the evolution of aerobic life was a phased process. The most important milestones of the process were the appearance, at first, of aerotolerance factors (catalase, peroxidase, Superoxide dismutase), and later, of an aerobic-type energy system (respiratory chain). The consecutive steps of morphophysiological progress are associated with the origin of these enzymes and enzyme systems. The advent of catalase could have given rise to the phenomenon of multicellularity on the basis of complementation of the catalase containing (deprived of another, initial enzyme, essential for the survival of cells) and catalase non-containing (preserving this initial “wild” enzyme) cells. The presence of catalase in multicellular heterotrophic fermenters led to their acquisition of photosynthesizing symbionts—protoplastids (which did not have their own catalase). The occurrence of energetically or physiologically expedient reactions in aerotolerant organisms utilizing free oxygen, did not balance the global effects of photosynthesis (an excessive accumulation of organic matter and oxygen, and a shortage of carbon dioxide). An equilibrium between organic synthesis and destruction processes was restored in the biosphere after the emergence of phosphorylative respiration. The great resemblance of enzyme systems and phosphorylation mechanisms in photosynthesis and respiration suggests that the respiratory assemblies were not created by nature anew, but evolved by way of inversion of the photosynthesizing apparatus in a part of protoplastids which had lost their capacity for photosynthesis (because of the termination of the supply of the radiant energy). The complication of the symbiosis of heterotrophs and photosynthesizers by the rise of a “third element”—protomitochondria —opened up new opportunities, the use of which could have led to a great diversification of cellular forms and thus promoted evolutionary progress.     

Autotrophic and Heterotrophic Metabolism of Hydrogenomonas I. Growth Yields and Patterns Under Dual Substrate Conditions

Auxotrophic mutants of Hydrogenomonas eutropha and H. facilis requiring utilizable amino acids were employed to demonstrate the simultaneous utilization of H(2) and an organic substrate for growth. The ratio of the cell yields under dual substrate conditions compared to heterotrophic conditions indicated the relative contributions of the autotrophic and heterotrophic systems to the growth of the organism. Wildtype H. eutropha grown under simultaneous conditions exhibited a dicyclic growth pattern, the first cycle representing either heterotrophic or simultaneous growth and the second cycle representing autotrophic growth. The duration of the changeover period was either very short with no plateau or long with a plateau up to 8 hr, depending upon the organic substrate. The growth rate under simultaneous conditions with some organic substrates was faster than either the autotrophic or heterotrophic rate, but was not the sum of the two rates. The data suggest that, in the presence of both organic and inorganic substrates, heterotrophic metabolism functions normally but autotrophic metabolism is partially repressed.     

Unusual microbial mat‐related structural diversity 2.1 billion years ago and implications for the Francevillian biota

The 2.1‐billion‐year‐old (Ga) Francevillian series in Gabon hosts some of the oldest reported macroscopic fossils of various sizes and shapes, stimulating new debates on the origin, evolution and organization of early complex life. Here, we document ten representative types of exceptionally well‐preserved mat‐related structures, comprising “elephant‐skin” textures, putative macro‐tufted microbial mats, domal buildups, flat pyritized structures, discoidal microbial colonies, horizontal mat growth patterns, wrinkle structures, “kinneyia” structures, linear patterns and nodule‐like structures. A combination of petrographic analyses, scanning electron microscopy, Raman spectroscopy and organic elemental analyses of carbon‐rich laminae and microtexture, indicate a biological origin for these structures. The observed microtextures encompass oriented grains, floating silt‐sized quartz grains, concentrated heavy minerals, randomly oriented clays, wavy‐crinkly laminae and pyritized structures. Based on comparisons with modern analogues, as well as an average δ¹³C organic matter (C_org) composition of ?32.94 ± 1.17‰ (1 standard deviation, SD) with an outlier of ?41.26‰, we argue that the mat‐related structures contain relicts of multiple carbon pathways including heterotrophic recycling of photosynthetically derived C_org. Moreover, the relatively close association of the macroscopic fossil assemblages to the microbial mats may imply that microbial communities acted as potential benthic O₂ oases linked to oxyphototrophic cyanobacterial mats and grazing grounds. In addition, the mat's presence likely improved the preservation of the oldest large colonial organisms, as they are known to strongly biostabilize sediments. Our findings highlight the oldest community assemblage of microscopic and macroscopic biota in the aftermath of the “Great Oxidation Event,” widening our understanding of biological organization during Earth's middle age.     

Nutrient cycling and plant dynamics in estuaries: A brief review

Eutrophication of European estuaries due to massive nutrient loading from urban areas and diffuse runoff from extensively cultivated land areas is analysed. Consequences for the ecology of estuaries, namely changes in plant species composition, which also affects heterotrophic organisms, are approached based on examples showing that the result is often a fundamental structural change of the ecosystem, from a grazing and/or nutrient controlled stable systems to unstable detritus/mineralisation systems, where the turnover of oxygen and nutrients is much more dynamic and oscillations between aerobic and anaerobic states frequently occur. Several relevant aspects are examined, namely the influence of rooted macrophytes on nutrient dynamics, by comparing bare bottom sediments with eelgrass covered sediments, primary production and the development of organic detritus, and hydrodynamics and its relations to the spatial distribution of macrophytes in estuarine systems.     

Suitability of Molluscs as Bioindicators for Meadow‐ and Flood‐Channels of the Elbe‐Floodplains

The goals of the subproject “molluscs” within the inter‐disciplinary research project “Indicator systems for the characterisation and prediction of ecological changes in floodplain systems” were: – develop further existing mollusc‐based indicator systems of site quality and to test their transferability, – characterise grassland sites within the recent floodplains of three study areas along the Elbe River, – analyse the relationships between indicator species‐/groups and abiotic parameters, – compile and use selected species traits in the analytical process. The results clearly show several characteristic species groups related to the hydrology of the sites (i.e. inundation and desiccation regime) and on to the degree of agricultural use. These dependencies can be interpreted by the simultaneous analysis of the species traits. “Models” are proposed, that are applicable to nature protection measures at the landscape scale. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Preprint Déjà Vu

Twenty‐five years ago, in August 1991, I spent a couple of afternoons at Los Alamos National Laboratory writing some simple software that enabled a small group of physicists to share drafts of their articles via automated email transactions with a central repository. Within a few years, the site migrated to the nascent WorldWideWeb as arXiv.org, and experienced both expansion in coverage and heavy growth in usage that continues to this day. In 1998, I gave a talk to a group of biologists—including David Lipman, Pat Brown, and Michael Eisen—at a meeting at Cold Spring Harbor Laboratory (CSHL) to describe the sharing of articles “pre‐publication” by physicists. The talk was met with some enthusiasm and prompted the “e‐biomed” proposal in the following spring by then NIH director Harold Varmus. He encouraged the creation of an NIH‐run electronic archive for all biomedical research articles, including both a preprint server and an archive of published peer‐reviewed articles, which generated significant discussion.     

Detection of photoactive siderophore biosynthetic genes in the marine environment

Iron is an essential element for oceanic microbial life but its low bioavailability limits microorganisms in large areas of the oceans. To acquire this metal many marine bacteria produce organic chelates that bind and transport iron (siderophores). While it has been hypothesized that the global production of siderophores by heterotrophic bacteria and some cyanobacteria constitutes the bulk of organic ligands binding iron in the ocean because stability constants of siderophores and these organic ligands are similar, and because ligand concentrations rise sharply in response to iron fertilization events, direct evidence for this proposal is lacking. This lack is due to the difficulty in characterizing these ligands due both to their extremely low concentrations and their highly heterogeneous nature. The situation for characterizing photoactive siderophores in situ is more problematic because of their expected short lifetimes in the photic zone. An alternative approach is to make use of high sensitivity molecular technology (qPCR) to search for siderophore biosynthesis genes related to the production of photoactive siderophores. In this way one can access their “biochemical potential” and utilize this information as a proxy for the presence of these siderophores in the marine environment. Here we show, using qPCR primers designed to detect biosynthetic genes for the siderophores vibrioferrin, petrobactin and aerobactin that such genes are widespread and based on their abundance, the “biochemical potential” for photoactive siderophore production is significant. Concurrently we also briefly examine the microbial biodiversity responsible for such production as a function of depth and location across a North Atlantic transect.     

“Making coin” and the networker: Masculine self‐making in the Australian professional managerial class

In this article I unpack the labour of “networking” to understand the changes in sociality and worker identity that have occurred in the Australian professional managerial class workforce under post‐Fordism. Drawing on fieldwork undertaken at the interface of the pubic service and private consultancy firms in Canberra, I break from dominant readings of intimacy in post‐Fordism which preference either a downwards imposition of “ways of being” from capital to worker, or a reactive self‐regulation in line with objective external structures. Networking, I argue, is as much about being recognised as patron as it is about any tangible economic benefits. The intimate relations and self‐fashioning of networking constitute attempts to embody particular classed, sexualised, gendered fantasies of the figure of “the networker” in post‐Fordist Australian business culture. This interpretation does not necessitate overlooking the tangible results of networking, and I discuss too, how masculine fantasy structures the topography of workplaces.     

Spatial and seasonal distribution of heterotrophic bacteria in pond water and sediments under different management practices

Population densities and generation time of heterotrophic bacteria were estimated in water and sediments of fish ponds used for polyculture, monoculture and traditional systems of fish farming over a period of two and a half years. Spatial differences in microbial densities in the ponds were related to the organic loadings of the farm site and farm management. A number of environmental factors such as nitrogen, dissolved organic carbon, bicarbonate and phosphate of water were found to be responsible for the seasonal changes of heterotrophic bacteria in these ponds.     

Exergy‐Based Population Dynamics

This article discusses whether “sustainability” has a physical meaning in applied thermodynamics. If it has, then it should be possible to derive general principles and rules for devising “sustainable systems.” If not, then other sides of the issue retain their relevance, but thermodynamic laws are not appropriate by themselves to decide whether a system or a scenario is sustainable. Here, we make use of a single axiom: that final consumption (material or immaterial) can be quantified solely in terms of equivalent primary exergy flows. On this basis, we develop a system theory that shows that if “simple” systems are based solely on the exploitation of fossil resources, they cannot be thermodynamically “sustainable.” But as renewable resources are brought into the picture and the system complexity grows, there are thresholds below or beyond which the system exhibits an ability to maintain itself (perhaps through fluctuations), in a self‐preserving (i.e., a sustainable) state. It appears that both complexity and the degree of nonlinearity of the transfer functions of the systems play a major role and—even for some of the simplest cases—lead to nontrivial solutions in phase space. Therefore, even if the examples presented in the article can be considered rather crude approximations to real, complex systems at best, the results show a trend that is worth further consideration.     

GROWTH,PHYSIOLOGY, AND ULTRASTRUCTURE OF A DIAZOTROPHIC CYANOBACTERIUM,CYANOTHECE SP. STRAIN ATCC 51142, IN MIXOTROPHIC AND CHEMOHETEROTROPHIC CULTURES1

The growth, physiology, and ultrastructure of the marine, unicellular, diazotrophic cyanobacterium, Cyanothece sp. strain ATCC 51142, was examined under mixotrophic and chemoheterotrophic conditions. Several organic substrates were tested for the capacity to support heterotrophic growth. Glycerol was the only substrate capable of enhancing mixotrophic growth in the light and supporting chemoheterotrophic growth in the dark. Dextrose enhanced mixotrophic growth but could not support chemoheterotrophic growth. Chemoheterotrophic cultures in continuous darkness grew faster and to higher densities than photoautotrophic cultures, thus demonstrating the great respiratory capacity of this cyanobacterial strain. Only small differences in the pigment content and ultrastructure of the heterotrophic strains were observed in comparison to photoautotrophic control strains. The chemoheterotrophic strain grown in continuous darkness and the mixotrophic strain grown in light/dark cycles exhibited daily metabolic oscillations in N₂ fixation and glycogen accumulation similar to those manifested in photoautotrophic cultures grown in light/dark cycles or continuous light. This “temporal separation” helps protect O₂-sensitive N₂ fixation from photosynthetic O₂ evolution. The rationale for cyclic glycogen accumulation in cultures with an ample source of organic carbon substrate is unclear, but the observation of similar daily rhythmicities in cultures grown in light/dark cycles, continuous light, and continuous dark suggests an underlying circadian mechanism.     

A lepidopteran (<Emphasis Type="Italic">Imbrasia belina</Emphasis>) might influence tree-grass balance of <Emphasis Type="Italic">Colophospermum mopane</Emphasis> savanna

Traditional explanations of tree-grass coexistence in African savannas are based on competition between these growth forms or demographic bottlenecks of trees maintained by fire or mammalian browsers. Perturbation of their “balance” may result in an alternate system state of woody encroachment. Invertebrate herbivory has never been offered as an explanation. We developed a consumer-resource model which illustrated that annual irruptions of a lepidopteran (Imbrasia belina), known as mopane worm, can determine the tree-grass balance of semi-arid Colophospermum mopane savanna in southern Africa. Model performance was sensitive to the abundance, hence mortality, of mopane worms, owing to their complete defoliation of tree leaf biomass resulting in altered competitive relations between trees and grasses. Invertebrate herbivores have been recognized in other systems as agents for effecting a state change of host tree populations; this modeling study offers a first indication of such a role for the well-researched tree-grass relations of African savannas.     

Principles of organization of polistinae (Hymenoptera,Vespidae) population

The paper describes some invariant relations of the Polistinae population structure, including resistance to abiotic and biotic factors that occurs against the background of the hierarchy of biological systems and increasing autonomy of their functioning. A decrease in the dependence on the hostile environment is shown to be due to the activity of foundresses and workers adjusting to external rhythms, developing specialized responses to predators and parasites (predictable external noise of biotic nature), and creating new information. The population organization of Polistinae wasps is considered in the framework of Anokhin’s theory of functional systems and systemogenesis. There are specific processes in the population that unite individual colonies and their reproduction; they are accompanied by the formation of an advanced feedback and functional systems. Systemic processes can be simultaneously regarded as “adaptation” (reflecting the organization of environmental elements) and as “adaptiveness” (reflecting the organization of the activity of intra-colony processes and the organization of reproduction). The organization of the colony activity and reproduction in functional systems reflects the future survival rather than the preceding phenomena and events. The behavior of individuals in a colony is determined not only by the effects of abiotic and biotic factors (via transformation of cues into behavioral programs), but also by previous adaptations (stored in the “memory” as images of still absent events). General progress, limited or partial progress, and narrow specialization in the organization of polistine colonies and populations are considered using the examples of morphofunctional, environmental, energy and information criteria. The emphasis on invariant relations makes it possible to more fully describe biological systems in terms of such general categories as isomorphism, homeostasis or self-organization, and also enables us to use more effectively the theory of general functional systems in studying social insects.