Evaluating Sierra Nevada Yellow-Legged Frog Distribution Using Environmental DNA

Genetic tools that identify species from trace DNA samples could supplement traditional survey methods to clarify distributional limits of rare species. For species with legal habitat protection, elevational limits of distributions are used to determine where management actions may affect endangered species. The endangered Sierra Nevada yellow-legged frog (Rana sierrae) generally is found down to 1,370 m, but in the Plumas National Forest, California, USA, there are a number of historical records below this elevation, resulting in protections extending to 1,067 m. This species is phenotypically similar to the foothill yellow-legged frog (R. boylii), with which it occasionally hybridizes. We used a combination of genetic methods to investigate the fine-scale distribution of the Sierra Nevada yellow-legged frog in the Plumas National Forest. We collected and analyzed environmental DNA (eDNA) samples from all accessible lower elevation sites with records of Sierra Nevada yellow-legged frog (n = 17) and swabbed 220 individuals for genetic identification from 2016–2018 to clarify the distribution of this endangered species. We created a climatic suitability model using the validated Sierra Nevada yellow-legged frog records and current (1970–2000) climate models to assess additional highly suitable localities for Sierra Nevada yellow-legged frog presence using eDNA capture. We did not confirm detection of Sierra Nevada yellow-legged frog eDNA at any historical sites and identified all swabbed individuals from below 1,370 m (n = 144) as foothill yellow-legged frogs. We located a new Sierra Nevada yellow-legged frog site (at 1,919 m) during surveys guided by the climatic suitability model. It does not appear after extensive eDNA and genetic sampling that the Sierra Nevada yellow-legged frog occurs below 1,370 m in this portion of their range at present. Our results show that eDNA sampling can be used as an effective management tool to evaluate historical locations and previously unknown suitable localities for current presence of a species of interest. © 2021 The Authors. The Journal of Wildlife Management published by Wiley Periodicals LLC on behalf of The Wildlife Society.     

Genomic scanning using AFLP to detect loci under selection in the moss Funaria hygrometrica along a climate gradient in the Sierra Nevada Mountains,Spain

The common cord moss Funaria hygrometrica has a worldwide distribution and thrives in a wide variety of environments. Here, we studied the genetic diversity in F. hygrometrica along an abiotic gradient in the Mediterranean high mountain of Sierra Nevada (Spain) using a genome scan method. Eighty‐four samples from 17 locations from 24 to 2700 m were fingerprinted based on their amplified fragment length polymorphism (AFLP) banding pattern. Using PCA and Bayesian inference we found that the genetic diversity was structured in three or four clusters, respectively. Using a genome scan method we identified 13 outlier loci, which showed a signature of positive selection. Partial Mantel tests were performed between the Euclidean distance matrices of geographic and climatic variables, versus the pair‐wise genetic distance of the AFLP dataset and AFLP‐positive outliers dataset. AFLP‐positive outlier data were significantly correlated with the gradient of the climatic variables, suggesting adaptive variation among populations of F. hygrometrica along the Sierra Nevada Mountains. We highlight the additional analyses necessary to identify the nature of these loci, and their biological role in the adaptation process.     

Shifts in fisher (Pekania pennanti) diet in response to climate-induced tree mortality in California assessed with DNA metabarcoding

A recent climate-induced tree mortality event in California, USA has led to dramatic landscape-level changes in the southern Sierra Nevada. Wide-spread conifer mortality was documented in habitat occupied by fisher (Pekania pennanti), a mature-forest associated species of conservation concern in this region. We analyzed fisher scats collected on the Sierra National Forest from the pre-tree-mortality period (PreTM, 2011 – 2013) and post-tree-mortality period (PostTM, 2017 – 2018). We used DNA metabarcoding to successfully identify taxa and summarized diet composition for 109 PreTM and 102 PostTM fisher scats. We observed 48 different diet items (33 assigned to species and 15 to genus). Mammals, birds, and plants of the Ribes genus (gooseberries and currents) comprised the highest proportions of diet items, although scats also contained DNA from reptiles, insects, arachnids, snails, and fungi. The frequency of occurrence of mammalian prey items was lower in PostTM (49.0%) versus PreTM scats (81.7%) with a reduction in the occurrence of two tree squirrels (Douglas squirrel and Humboldt’s flying squirrel). A higher proportion of scats collected PostTM (46.1%) contained DNA from Ribes spp. versus scats collected PreTM (19.3%). Our data reveal potential cascading effects of climate-induced tree mortality on fisher diet in the southern Sierra Nevada. Flexibility in fisher diet, however, may allow resilience to ecological change though future studies should consider the behavioral, energetic, demographic or fitness consequences from a shift away from medium-sized mammalian prey to plants.     

Literature based species occurrence data of birds of northeast India

The northeast region of India is one of the world's most significant biodiversity hotspots. One of the richest bird areas in India, it is an important route for migratory birds and home to many endemic bird species. This paper describes a literature-based dataset of species occurrences of birds of northeast India. The occurrence records documented in the dataset are distributed across eleven states of India, viz.: Arunachal Pradesh, Assam, Bihar, Manipur, Meghalaya, Mizoram, Nagaland, Sikkim, Tripura, Uttar Pradesh and West Bengal. The geospatial scope of the dataset represents 24 to 29 degree North latitude and 78 to 94 degree East longitude, and it comprises over 2400 occurrence records. These records have been collated from scholarly literature published between1915 and 2008, especially from the Journal of the Bombay Natural History Society (JBNHS). The temporal scale of the dataset represents bird observations recorded between 1909 and 2007. The dataset has been developed by employing MS Excel. The key elements in the database are scientific name, taxonomic classification, temporal and geospatial details including geo-coordinate precision, data collector, basis of record and primary source of the data record. The temporal and geospatial quality of more than 50% of the data records has been enhanced retrospectively. Where possible, data records are annotated with geospatial coordinate precision to the nearest minute. This dataset is being constantly updated with the addition of new data records, and quality enhancement of documented occurrences. The dataset can be used in species distribution and niche modeling studies. It is planned to expand the scope of the dataset to collate bird species occurrences across the Indian peninsula.     

EVOLUTIONARY AND HISTORICAL ANALYSIS OF PROTEIN VARIATION IN THE BLOTCHED FORMS OF SALAMANDERS OF THE ENSATINA COMPLEX (AMPHIBIA: PLETHODONTIDAE)

Geographic variation in 23 to 29 protein-encoding genetic loci was examined in 48 populations of the Ensatina complex, a “ring species” distributed around the Central Valley of California. The samples span two critical links in the chain of morphologically distinct units: the transition from the unblotched to blotched color pattern types in the vicinity of Lassen Peak, northeastern California, and a geographic gap in the range of the complex in the San Gabriel Mountains, southern California. A general pattern of isolation by distance with a regular buildup of genetic distance correlated with increases in geographic distance characterizes the populations studied, with the exception of a little-differentiated group of populations in the northern Sierra Nevada; this region is postulated to be a zone of genetic reticulation characterized by relatively high gene flow. An adaptively significant color pattern is thought to have spread into the northern Sierra Nevada from the south, but protein variants have been introduced both from the north and the south. Genetic distances across the San Gabriel Mountain gap match expectations from the pattern of buildup of genetic distance as a function of geographic distance elsewhere in the complex. A phylogenetic analysis of the protein data supports the reticulation hypothesis; whereas the southernmost populations currently do constitute a monophyletic assemblage, an “extinction experiment” demonstrates that the distinction could be the result of the recent extinction of populations in a present gap in our sampling. The Ensatina complex appears to be a dynamic entity representing several stages in the evolution of species. It is a ring species, and whereas various taxonomic arrangements are possible, no taxonomic changes are proposed.     

Demographic responses to climate‐driven variation in habitat quality across the annual cycle of a migratory bird species

The demography and dynamics of migratory bird populations depend on patterns of movement and habitat quality across the annual cycle. We leveraged archival GPS‐tagging data, climate data, remote‐sensed vegetation data, and bird‐banding data to better understand the dynamics of black‐headed grosbeak (Pheucticus melanocephalus) populations in two breeding regions, the coast and Central Valley of California (Coastal California) and the Sierra Nevada mountain range (Sierra Nevada), over 28 years (1992–2019). Drought conditions across the annual cycle and rainfall timing on the molting grounds influenced seasonal habitat characteristics, including vegetation greenness and phenology (maturity dates). We developed a novel integrated population model with population state informed by adult capture data, recruitment rates informed by age‐specific capture data and climate covariates, and survival rates informed by adult capture–mark–recapture data and climate covariates. Population size was relatively variable among years for Coastal California, where numbers of recruits and survivors were positively correlated, and years of population increase were largely driven by recruitment. In the Sierra Nevada, population size was more consistent and showed stronger evidence of population regulation (numbers of recruits and survivors negatively correlated). Neither region showed evidence of long‐term population trend. We found only weak support for most climate–demographic rate relationships. However, recruitment rates for the Coastal California region were higher when rainfall was relatively early on the molting grounds and when wintering grounds were relatively cool and wet. We suggest that our approach of integrating movement, climate, and demographic data within a novel modeling framework can provide a useful method for better understanding the dynamics of broadly distributed migratory species.     

AnthWest,occurrence records for wool carder bees of the genus Anthidium (Hymenoptera,Megachilidae, Anthidiini) in the Western Hemisphere

This paper describes AnthWest, a large dataset that represents one of the outcomes of a comprehensive, broadly comparative study on the diversity, biology, biogeography, and evolution of Anthidium Fabricius in the Western Hemisphere. In this dataset a total of 22,648 adult occurrence records comprising 9657 unique events are documented for 92 species of Anthidium, including the invasive range of two introduced species from Eurasia, A. oblongatum (Illiger) and A. manicatum (Linnaeus). The geospatial coverage of the dataset extends from northern Canada and Alaska to southern Argentina, and from below sea level in Death Valley, California, USA, to 4700 m a.s.l. in Tucumán, Argentina. The majority of records in the dataset correspond to information recorded from individual specimens examined by the authors during this project and deposited in 60 biodiversity collections located in Africa, Europe, North and South America. A fraction (4.8%) of the occurrence records were taken from the literature, largely California records from a taxonomic treatment with some additional records for the two introduced species. The temporal scale of the dataset represents collection events recorded between 1886 and 2012. The dataset was developed employing SQL server 2008 r2. For each specimen, the following information is generally provided: scientific name including identification qualifier when species status is uncertain (e.g. “Questionable Determination” for 0.4% of the specimens), sex, temporal and geospatial details, coordinates, data collector, host plants, associated organisms, name of identifier, historic identification, historic identifier, taxonomic value (i.e., type specimen, voucher, etc.), and repository. For a small portion of the database records, bees associated with threatened or endangered plants (~ 0.08% of total records) as well as specimens collected as part of unpublished biological inventories (~17%), georeferencing is presented only to nearest degree and the information on floral host, locality, elevation, month, and day has been withheld. This database can potentially be used in species distribution and niche modeling studies, as well as in assessments of pollinator status and pollination services. For native pollinators, this large dataset of occurrence records is the first to be simultaneously developed during a species-level systematic study.     

微山湖鸟类多样性特征及其影响因子

2010年10月至2011年9月期间,使用样线法对微山湖鸟类多样性进行研究.共发现鸟类132种,隶属13目39科,其中留鸟39种,夏候鸟33种,冬候鸟14种,旅鸟46种,分别占全部种类的29.6％、25.0％、10.6％和34.85％;国家二级保护鸟类有12种,省级重点保护鸟类16种,另外50种和16种鸟类分别列入中日、中澳候鸟保护协定.灰鹤、乌雕、沙鵖和白顶鵖4种鸟类在南四湖首次记录.根据微山湖的地理和植被状况,将研究区域划分为水域、次生林、农田和居民区4生境,不同生境中鸟类群落的Shannon-Wiener指数高低为沼泽水域＞次生林＞农田＞居民区,Pielou指数高低为沼泽水域＞农田＞次生林＞居民区.次生林和农田鸟类群落的相似性指数最高,沼泽水域与居民区的相似性最低.春季末期鸟类多样性指数和均匀性指数最高,秋季末期最低.冬季鸟类种类最多、密度最大,春初鸟类种类最少、密度最小.距居民区的距离、距公路的距离、植被盖度、人工池塘数目、水面积比例和深水面积比例等对鸟类多样性影响显著.     

Historical and contemporary distributions of carnivores in forests of the Sierra Nevada, California, USA

Aim Mammalian carnivores are considered particularly sensitive indicators of environmental change. Information on the distribution of carnivores from the early 1900s provides a unique opportunity to evaluate changes in their distributions over a 75‐year period during which the influence of human uses of forest resources in California greatly increased. We present information on the distributions of forest carnivores in the context of two of the most significant changes in the Sierra Nevada during this period: the expansion of human settlement and the reduction in mature forests by timber harvest. Methods We compare the historical and contemporary distributions of 10 taxa of mesocarnivores in the conifer forests of the Sierra Nevada and southern Cascade Range by contrasting the distribution of museum and fur harvest records from the early 1900s with the distribution of detections from baited track‐plate and camera surveys conducted from 1996 to 2002. A total of 344 sample units (6 track plates and 1 camera each) were distributed systematically across c. 3,000,000 ha area over a 7‐year period. Results Two species, the wolverine (Gulo gulo) and the red fox (Vulpes vulpes), present in the historical record for our survey area, were not detected during the contemporary surveys. The distributions of 3 species (fisher [Martespennanti], American marten [M. americana], and Virginia opossum [Didelphisvirginiana]) have substantially changed since the early 1900s. The distributions of fishers and martens, mature‐forest specialists, appeared to have decreased in the northern Sierra Nevada and southern Cascade region. A reputed gap in the current distribution of fishers was confirmed. We report for the first time evidence that the distribution of martens has become fragmented in the southern Cascades and northern Sierra Nevada. The opossum, an introduced marsupial, expanded its distribution in the Sierra Nevada significantly since it was introduced to the south‐central coast region of California in the 1930s. There did not appear to be any changes in the distributions of the species that were considered habitat generalists: gray fox (Urocyon cinereoargenteus), striped skunk (Mephitis mephitis), western spotted skunk (Spilogale gracilis), or black bear (Ursus americanus). Detections of raccoons (Procyon lotor) and badgers (Taxidea taxus) were too rare to evaluate. Contemporary surveys indicated that weasels (M. frenata and M. erminea) were distributed throughout the study area, but historical data were not available for comparison. Main conclusions Two species, the wolverine and Sierra Nevada red fox, were not detected in contemporary surveys and may be extirpated or in extremely low densities in the regions sampled. The distributions of the mature forest specialists (marten and fisher) appear to have changed more than the distributions of the forest generalists. This is most likely due to a combination of loss of mature forest habitat, residential development and the latent effects of commercial trapping. Biological characteristics of individual species, in combination with the effect of human activities, appear to have combined to affect the current distributions of carnivores in the Sierra Nevada. Periodic resampling of the distributions of carnivores in California, via remote detection methods, is an efficient means for monitoring the status of their populations.     

Kalbreyeracanthus kirkbridei (acanthaceae), a new species from Colombia

A new species Kalbreyeracathus kirkbridei, from the Sierra Nevada de Santa Marta, is described, illustrated, and compared with K. atropurpureus, the only other species in the genus.     

Synchronicity in elevation range shifts among small mammals and vegetation over the last century is stronger for omnivores

In mountain ecosystems, species can be said to respond synchronously to environmental change when the elevation ranges of vegetation types and their associated vertebrates expand or contract in the same direction. Conversely, the response is asynchronous when the elevation ranges of vegetation types and associated vertebrates change in different directions. The capacity of vertebrate species to respond synchronously with change in the elevation ranges of the vegetation that comprises their habitat is likely a function of their ecological traits. Here we combine measures of elevation range shifts in 23 vertebrate species with those of their associated vegetation types across 80 yr, on a large elevation transect in California's Sierra Nevada mountains that encompasses Yosemite National Park. Half the species’ shifts were synchronous with vegetation shifts, ¼ of the species were asynchronous, and the others showed no relationship. Most species that responded synchronously to changes in vegetation elevation ranges expanded their elevation range, and are inhabitants of low and intermediate elevations. In contrast, those species whose range shifts were asynchronous to associated vegetation shifts inhabit high elevations. These species experienced contraction in elevation range even while their associated vegetation types expanded. However, these species were responding synchronously to a subset of their associated vegetation types. Considering trait‐based predictors, omnivores were more synchronous than herbivores. Our results on synchronous and asynchronous elevation shifts with vegetation may permit more accurate modeling of future ranges for vertebrates in California's Sierra Nevada. The approach also offers a new method for use in assessment of vertebrate vulnerability in other mountain regions, and can be an important component of assessing their vulnerability to climate change.     

Avian Response to Mechanical Aspen Restoration in Sierra Nevada Coniferous Forest

Using mechanical treatments to mimic natural disturbances is becoming a standard management and restoration approach. In the Sierra Nevada, as throughout much of western North America, much of aspen habitat is in poor health. Because of the high ecological value of healthy aspen, and its limited extent on the landscape, restoration to reverse the decline and improve stand health has become a management priority in the region. To evaluate the ecological effects of mechanically removing competing conifers to restore aspen in the Sierra Nevada, we compared vegetation characteristics and bird abundance in treated and untreated aspen stands on the Lassen National Forest before and up to 13 years after mechanical conifer removal. Treatments reduced total canopy cover and increased herbaceous cover and the number of aspen stems, while shrub and overstory aspen covers were unchanged. Of 10 aspen focal bird species, 7 increased in abundance following treatment relative to controls, including all species associated with early seral aspen habitat and cavity nesting species; none declined. In contrast, of the six conifer focal species, the four associated with denser conifer habitat declined as a result of the treatments. The two species associated with conifer edges and understory cover increased. Our results demonstrate mechanical conifer removal treatments can provide ecologically meaningful changes in habitat for the avian community and are an effective tool for restoring ecological values of degraded aspen habitat for birds in the Sierra Nevada.     

Distribution and conservation of the relict interaction between the butterfly Agriades zullichi and its larval foodplant (Androsace vitaliana nevadensis)

Although Mediterranean mountains are considered biodiversity hot-spots, the presence of relict biotic interactions as a testimony of a past colder climate is an aspect frequently missed. Herein we investigate the distribution and conservation problems of a relict interaction in the Sierra Nevada mountains (southern Europe) between the butterfly Agriades zullichi—a rare and threatened butterfly—and its larval foodplant Androsace vitaliana subsp. nevadensis. We designed an intensive field survey to obtain a comprehensive presence dataset. This was used to calibrate species distribution models with absences taken at local and regional extents, analyze the potential distribution, evaluate the influence of environmental factors in different geographical contexts, and evaluate conservation threats for both organisms. We found 39 presence localities inhabited by the larval foodplant and the butterfly comprising 60.93 ha, with 82 % of the area concentrated in ten larger localities. The local and regional distribution models explained 68.7 and 85.0 % deviance, indicating a suitable area of 1,884.8 and 9,621.22 ha respectively. Topography and soil properties were the most important variables in the local model and temperature in the regional model. We observed several threats such as restricted extent of occurrence, lack of larval foodplant regeneration, the negative effect of the ski resort and a potential high sensitivity to climate change. Finally, we recommend some management measures in order to improve the conservation of key populations of both species, reinforcing A. vitaliana nevadensis populations and researching the importance of phenology in the persistence of this interaction under climate change.     

Vascular plant diversity and climate change in the upper zone of Sierra Nevada,Spain

Abstract

This study examines the effects of altitudinal, temperature and aspect gradients on vascular plant species richness on mountain tops in Sierra Nevada (Spain) at different spatial scales (1 m² quadrats, plot clusters of 4 m², upper summit area down to the 5-m contour line, entire summit down to the 10-m contour line). The methodology follows the Global Observation Research Initiative in Alpine Environments (GLORIA) programme. Floristic and soil temperature data of eight summits sites in two neighbouring regions of the high part of Sierra Nevada (from 2668 m to 3327 m a.s.l.) were used in this study. In total, 102 taxa were recorded (84 genera; 29 families). The species richness decreased, whereas the proportion of endemic taxa increased with elevation. There were significant linear relationships between species richness and altitude and average soil temperature at each spatial scale. However, there was no significant relationship between species richness and aspect variables. Facing continued climate change, the high-altitude flora of Sierra Nevada is expected to be particularly vulnerable and prone to warming-induced biodiversity losses due to the high proportion of endemic taxa, ranging from 23% at lower elevations up to 67% at higher ones.     

Distribution of birds on eastern and western slopes of the sierra aconquija in the northwestern argentine Andes

The populations of birds (diurnal birds of prey excluded) were studied on both east and west oriented slopes in the Sierra de Aconquija, Tucumán province, northwestern Argentina. The transect method of bird observation was combined with strip surveys. The study period was mid November till early March, during which time most of the Andean bird species are breeding. The eastern slope has frequent fog, whereas the western one is sunny with scarcely rain. Species occurrence and abundance were recorded which in part depend on the altitude. Probable further reasons for these patterns of local distribution are discussed.     

Two new species of Habracanthus (Acanthaceae) from Colombia

Two new Colombian species ofHabracanthus,H. malacus from the Sierra Nevada de Santa Marta andH. latifolius from the Sierra de Perijá, are described, illustrated, and compared withH. antipharmacus, their closest relative.     

Modeling distributions of disjunct populations of the Sierra Madre Sparrow

ABSTRACT Sierra Madre Sparrows (Xenospiza baileyi) are among the least known of all bird species in Mexico. Recent surveys have discovered previously unknown populations and the current known distribution of Sierra Madre Sparrows consists of two populations separated by >800 km. We used available distributional information to develop ecological niche models that (1) predict much of the distribution potential of the species, (2) establish that the broad disjunction separating the two populations has ecological correlates that appear to be important to the distributional of these sparrows, and (3) illustrate the extremely restricted ecological distribution of the species. We used two sets of climatic and topographic variables, with one including all 22 variables available and the second with only six variables that were positively related to quality of distributional models. Although indications of differences between the two sets of populations were found based on the full 22‐dimensional environmental dataset, such a highly dimensional analysis is vulnerable to over‐fitting; models based on the reduced dataset indicated that the two populations occur in areas with similar ecological conditions. Our models also suggest that southern population of Sierra Madre Sparrows covers most of their potential range in that region. The potential range of the northern population, however, extends beyond known points of occurrence. To clarify the distribution of Sierra Madre Sparrows and evaluate their status and conservation opportunities, detailed searches for additional populations in areas identified by the model are needed.     

A Quantitative Evaluation of the Conservation Umbrella of Spotted Owl Management Areas in the Sierra Nevada

Whether by design or default, single species management often serves as an umbrella for species with similar habitat requirements. In recent decades the focus of National Forest management in the Sierra Nevada of California has shifted towards increasing closed canopy mature forest conditions through the protection of areas occupied by the California Spotted Owl (Strix occidentalis occidentalis). To evaluate the implications of these habitat changes and the potential umbrella resulting from a system of owl reserves on the broader avian community, we estimated occupancy of birds inside and outside of Spotted Owl Home Range Core Areas in northeastern California. We used point count data in a multi-species hierarchical Bayesian model incorporating the detection history of 81 species over a two-year time period (2005-2006). A small set of vegetation cover and topography covariates were included in the model to account for broad differences in habitat conditions, as well as a term identifying whether or not a site was within a Core Area. Seventeen species had a negative Core Area effect, seven had a positive effect, and the rest were not significant. Estimated species richness was significantly different with 23.1 species per 100 m radius circle outside Core Areas and 21.7 inside Core Areas. The majority of the species negatively associated with Core Areas are tied to early successional and other disturbance-dependent habitats. Conservation and climate vulnerability rankings were mixed. On average we found higher scores (greater risk) for the species positively associated with Core Areas, but a larger number of species with the highest scores were negatively associated with Core Areas. We discuss the implications for managing the Sierra Nevada ecosystem and illustrate the role of monitoring broader suites of species in guiding management of large complex ecosystems.     

Seedling establishment of two shrubby plants native to the Sierra Nevada mountain range

The Sierra Nevada mountain range near the Mediterranean Sea is an unique environment known for the variety of endemic species. Nevertheless, an alpine ski station situated on the mountain has dramatically affected the landscape, leaving some areas barren. In an effort to restore the vegetation cover, laboratory experiments were conducted with seeds of Genista versicolor Boiss and Reseda complicata Bory, two shrubby plants native to Sierra Nevada. Using different concentrations of two plant growth regulators, Ethrel and N⁶-benzyladenine, seeds from both species were planted in soil sampled from the alpine ski resort. Surprisingly, both Ethrel and N⁶-benzyladenine significantly improved seedling establishment. Consequently, seedling pre-treatment with definite plant growth regulators could be a useful approach to revegetation of the Sierra Nevada mountain range.     

Historical and Contemporary DNA Indicate Fisher Decline and Isolation Occurred Prior to the European Settlement of California

Establishing if species contractions were the result of natural phenomena or human induced landscape changes is essential for managing natural populations. Fishers (Martes pennanti) in California occur in two geographically and genetically isolated populations in the northwestern mountains and southern Sierra Nevada. Their isolation is hypothesized to have resulted from a decline in abundance and distribution associated with European settlement in the 1800s. However, there is little evidence to establish that fisher occupied the area between the two extant populations at that time. We analyzed 10 microsatellite loci from 275 contemporary and 21 historical fisher samples (1880–1920) to evaluate the demographic history of fisher in California. We did not find any evidence of a recent (post-European) bottleneck in the northwestern population. In the southern Sierra Nevada, genetic subdivision within the population strongly influenced bottleneck tests. After accounting for genetic subdivision, we found a bottleneck signal only in the northern and central portions of the southern Sierra Nevada, indicating that the southernmost tip of these mountains may have acted as a refugium for fisher during the anthropogenic changes of the late 19^th and early 20^th centuries. Using a coalescent-based Bayesian analysis, we detected a 90% decline in effective population size and dated the time of decline to over a thousand years ago. We hypothesize that fisher distribution in California contracted to the two current population areas pre-European settlement, and that portions of the southern Sierra Nevada subsequently experienced another more recent bottleneck post-European settlement.