The temporal and spatial distribution of the valves of the diatom Rhoicosphenia curvata in the River Wey

SUMMARY. During a study of the seasonal changes in the diatom flora of the River Wey, Surrey, it was found that valves of Rhoicosphenia curvata (Kütz.) Grunow were usually present in samples collected in the stretch of the river between Tilford and Guildford but not in any significant numbers either upstream or downstream of this region. More detailed study showed that a tributary, the Farnham Wey, was the source of this particular diatom and that downstream of the confluence of these rivers the numbers steadily decreased. Valves of Rhoicosphenia curvata were most numerous in suspension in the river during the summer months, although the living organism is an epiphyte growing and dividing vigorously during the early spring and even in late winter. It is suggested that dead cells and detached valves are released into the river, from its tributary, during the summer, there being no evidence that this organism can actively divide or survive as a member of the river plankton. The valves form a convenient marker for the mixing of two distinct bodies of water.     

Centric diatom algae of the Selenga River and its delta branches

Different stages of the study of taxonomical composition of centric diatoms in the Selenga River are considered. A revision of the species composition and a general systematic list are made. New for the Selenga River diatom species are discovered. The role of small-sized centric diatoms in different years and vegetation periods is assessed. A comparison of the composition and the level of development of centric diatoms in 1958–1959 and 2002–2005 is made.     

Inaccuracy of counts of organisms in water or other samples: effects of pre-dilution

Samples, such as raw waters, which contain large numbers of organisms will need to be pre-diluted before culture, in order to count or estimate the numbers present. This introduces a further approximation into the results obtained from routine sampling and laboratory procedures. Computers allow calculation of 95% confidence intervals (c.i.) for the estimated count in the pre-dilution sample. Although such confidence intervals can be wide, the variation in the density of organisms in the water source will be as large and probably much larger than the confidence intervals suggest. Accordingly, it is not surprisng that series of results from routine samples are highly variable.     

The effect of bacteria on the solubilization of silica in diatom frustules

P atrick , S heila & H olding , A.J. 1985. The effect of bacteria on the solubilization of silica in diatom frustules. Journal of Applied Bacteriology 59 , 7–16.
Natural bacterial populations in samples of water from Loch Leven and Lough Neagh increased the rate of solubilization of frustule silica from an axenic Cyclotella meneghiniana culture, compared with sterile autolysis, at 25C. In the inoculated cultures 50–60% of the silica was solubilized over a period of 30 d. Bacterial populations in Loch Leven water also enhanced the solubilization of silica from non-axenic cultures of Asterionella formosa, Tabellaria flocculosa, Navicula pellicu-losa and C. meneghiniana , compared with control cultures sterilized with mercuric chloride. Similar results were obtained with Lough Neagh populations incubated with A. formosa . In comparison with untreated cells, the treatment of diatom cells with ultra-sonication did not increase the release of silica. Pure cultures of bacteria from Loch Leven water enhanced the release of silica from non-axenic A. formosa and axenic C. meneghiniana compared with sterile control treatments. The variation in the ability of cultures to solubilize the frustule silica appeared to be related to their potential to produce hydrolytic enzymes. Natural populations of Loch Leven and Lough Neagh water bacteria and certain bacterial cultures caused the diatoms to aggregate, which did not enhance the release of silica.     

Centric diatom algae (Centrophyceae) in waterbodies and water courses of the middle Irtysh basin

Light and scanning electron microscopy studies of centric diatoms of the plankton in the middle Irtysh River and waterbodies and water courses of its basin have revealed 21 taxa of Centrophyceae from 9 genera, including 14 new for the region. A revision of the species composition allowed us to specify and broaden the list of centric diatoms in the Omsk Priirtyshye up to 30 species.     

Kinetics of dissolution of Antarctic diatom frustules and the biogeochemical cycle of silicon in the Southern Ocean

Summary In order to simulate the fate of biogenic silica generated in the surface waters of the Southern Ocean, the dissolution of silica frustules was studied for seven natural assemblages of diatoms, collected during summer 1984 in the Indian sector, and two typical Antarctic diatoms (Nitzschia cylindrus and Chaetoceros deflandrei), following the procedure of Kamatani and Riley (1979). For mean summer conditions in the surface waters of the Southern Ocean (2-3d^-1 for the natural assemblages. The silica frustules trapped by fecal pellets and by gelatinous aggregates, and rapidly transported through the cold waters of the Circumpolar Current, reach the sea bottom of either the continental shelves of the abysses without loosing much of the initial amount of silica (less than 10%). A model based on Stokes' law, modified to take in account of non ideal conditions and of the upwelling rate, is used in order to simulate the fate of silica of unaggregated particles settling down in the cold waters of the Antarctic Divergence. It supports the ideas that 1-the cycle of siliceous particles which radii are <2 m (i.e., of a part of the nanoplankton) is completely achieved in the surface layer, 2-although the biogenic silica of large unaggregated particles (radii over 25 m) may reach the seabottom (within one month to a few years) without complete dissolution, the main explanation for the accumulation of biogenic silica on Antarctic abysses remains transport by fecal pellets and gelatinous aggregates.     

Attached diatom communities from the lower Truckee River,summer and fall, 1986

The algal flora of the Truckee River below Reno, Washoe County, Nevada was examined during the summer and fall months of 1986. This reach of the lower Truckee River exhibited a substantial gradient in dissolved inorganic nitrogen associated with sources which included treated wastewater from the Reno metropolitan area. The algal communities were similar to those of other river systems of the Great Basin. Cyanophyta and Chlorophyta formed encrusting mats on the substrate, with the nitrogen fixer Calothrix atricha relatively abundant upstream from the nitrogen source. Diatoms were abundant within and upon this mat. A total of 139 diatom taxa and 11 taxa other than diatoms was identified from this flora. Several of the diatom taxa, including Achnanthes minutissima, Diatoma vulgare, Nitzschia dissipata, and Nitzschia palea, demonstrated distinct downriver patterns in relative abundance.     

Distribution of algae in the San Joaquin River, California, in relation to nutrient supply, salinity and other environmental factors

1. The taxonomic composition and biomass of the phytoplankton and the taxonomic composition of the phytobenthos of the San Joaquin River and its major tributaries were examined in relation to water chemistry, habitat and flow regime. Agricultural drainage and subsurface flow contribute to a complex gradient of salinity and nutrients in this eutrophic, ‘lowland type’ river. 2. Because of light‐limiting conditions for growth, maintenance demands of the algae exceed production during summer and autumn in the San Joaquin River where there is no inflow from tributaries. In contrast to substantial gains in concentration of inorganic nitrogen and soluble reactive phosphorus during the summer of normal‐flow years, net losses of algal biomass (2–4 μg L^?1 day^?1 chlorophyll a) occurred in a mid‐river segment with no significant tributary inflow. However, downstream of a large tributary draining the Sierra Nevada, a substantial net gain in algal biomass (6–11 μg L^?1 day^?1) occurred in the summer, but not in the spring (loss of 1–6 μg L^?1 day^?1) or autumn (loss of 2–5 μg L^?1 day^?1). 3. The phytoplankton was dominated in summer by ‘r‐selected’ centric diatoms (Thalassiosirales), species both tolerant of variable salinity and widely distributed in the San Joaquin River. Pennate diatoms were proportionally more abundant (in biomass) in the winter, spring and autumn. Abundant taxa included the diatoms Cyclotella meneghiniana, Skeletonema cf. potamos, Cyclostephanos invisitatus, Thalassiosira weissflogii, Nitzschia acicularis, N. palea and N. reversa, and the chlorophytes Chlamydomonas sp. and Scenesdesmus quadricauda. Patterns in the abundance of species indicated that assembly of the phytoplankton is limited more by light and flow regime than by nutrient supply. 4. The phytobenthos was dominated by larger, more slowly reproducing pennate diatoms. Few of the abundant species are euryhaline. The diatoms Navicula recens and Nitzschia inconspicua and cyanophytes, Oscillatoria spp., were the principal late‐summer benthic species upstream in the mainstem and in drainages of the San Joaquin Valley. Many of the other abundant diatoms (Amphora veneta, Bacillaria paxillifer, Navicula symmetrica, Nitzschia amphibia, N. fonticola, N. palea, Pleurosigma salinarum) of late‐summer assemblages in these segments also are motile species. While many of these species also were abundant in segments downstream of confluences with rivers draining the Sierra Nevada, the relative abundance of prostrate (Cocconeis placentula var. euglypta, Navicula minima) and erect or stalked (Achnanthidium deflexum, Achnanthes lanceolata, Gomphonema kobayasii, G. parvulum var. lagenula) diatoms and Stigeoclonium sp. was greater in these lower San Joaquin River segments. 5. A weighted‐averaging regression model, based on salinity and benthic‐algal abundance in the San Joaquin River and segments of its major tributaries within the San Joaquin Valley, yielded a highly significant coefficient‐of‐determination (r²=0.84) and low prediction error between salinity inferred from the species and that observed, indicating that salinity tolerance is a primary constraint on growth and assembly of the phytobenthos. The same measures of predictability indicated poor performance of a model based on inorganic nitrogen. However, with a greater representation of tributaries (including segments within the Sierra Nevada foothills) in the sample set, an inorganic nitrogen model also yielded a highly significant coefficient‐of‐determination (r²=0.87) and low prediction error between the species‐inferred and the observed concentration. As with the salinity model (r²=0.94) for the enlarged data set, a systematic difference (increased deviation of residuals) existed at high inorganic nitrogen concentrations. These results indicate substantial interaction between salinity and inorganic nitrogen as constraints on the structure of benthic‐algal communities of the San Joaquin River basin.     

Small angle neutron scattering on an absolute intensity scale and the internal surface of diatom frustules from three species of differing morphologies

The internal nanostructure of the diatoms Cyclotella meneghiniana, Seminavis robusta and Achnanthes subsessilis was investigated using small angle neutron scattering (SANS) to examine thin biosilica samples, consisting of isotropic (powder) from their isolated cell walls. The interpretation of SANS data was assisted by several other measurements. The N₂ adsorption, interpreted within the Branuer–Emmet–Teller isotherm, yielded the specific surface area of the material. Fourier transform infrared (FTIR) and Raman spectroscopy indicates that the isolated material is amorphous silica with small amounts of organic cell wall materials acting as a filling material between the silica particles. A two-phase (air and amorphous silica) model was used to interpret small angle neutron scattering data. After correction for instrumental resolution, the measurements on two SANS instruments covered an extended range of scattering vectors 0.0011 nm^?1 < q < 5.6 nm^?1, giving an almost continuous SANS curve over a range of scattering vectors, q, on an absolute scale of intensity for each sample. Each of the samples gave a characteristic scattering curve where log (intensity) versus log (q) has a ?4 dependence, with other features superimposed. In the high-q regime, departure from this behaviour was observed at a length-scales equivalent to the proposed unitary silica particle. The limiting Porod scattering law was used to determine the specific area per unit of volume of each sample illuminated by the neutron beam. The Porod behaviour, and divergence from this behaviour, is discussed in terms of various structural features and the proposed mechanisms for the bio-assembly of unitary silica particles in frustules.     

A comparison of diatom and macroinvertebrate classification of sites in the Kiewa River system, Australia

Diatoms and macroinvertebrates are both commonly used for biological assessment of stream condition. As the use of biological assessment techniques increases, resource managers will need to make decisions on which biological tool to use for a particular study. In a study of the Kiewa River, Victoria, Australia we assessed these two components of the biota—macroinvertebrates and diatoms—using indices and pattern analysis, and comparing them with an a priori landscape classification. We also assessed the relationship exhibited between the biological results and environmental variables which are usually significant in stream ecosystems. To make the data comparable we used categorical abundances for both data sets. The pattern analyses showed complementary results, with diatoms more closely related to water quality variables, whereas macroinvertebrates were primarily related to catchment and habitat features. An analysis of a combined data set (diatoms plus macroinvertebrates) showed no extra information was gained. Using categorisation to create consistency between data sets was shown to reduce the information and affect results from the diatom analyses. The results suggested that the locally derived bioassessment models and indices provided a more accurate assessment of the sites than the overseas-derived diatom index. The outcomes are complicated by issues of data weighting, whereby a presence/absence diatom index may have performed better than abundance-weighted indices due to strong dominance of one or two species at a site. Future comparisons will benefit from an increase in the knowledge of regional diatom taxonomy and autecology.     

Effects of counting variances on water quality assessments: implications from four benthic diatom samples,each counted by 40 diatomists

The European Water Framework Directive (EU WFD) aims to improve and maintain the water quality of lakes and rivers. Diatoms play an important role for implementing the EU WFD as they are widely used to assess water quality. To asses and use diatom-based evaluations in practice, it is essential to know and to minimize the analyst-dependent variability of the primary diatom results. We compare the counting results of benthic diatoms from two river and two lake samples as identified by 40 participants of the first German benthic diatom intercalibration exercise. Differences among participants and auditors are calculated with the Bray-Curtis distance, and similarities are graphically displayed by detrended correspondence analyses. Additionally, this study identifies the effects of counting variances on the ecological water assessment with the German PHYLIB method for implementing the EU WFD using the above dataset. Counting result differences among participants may have a significant impact on the assessed water quality. Some taxonomically problematic taxa do not have indicator values (no impact), sometimes, several taxonomic mistakes counterbalance each other during assessment (no or minor impact), and sometimes, taxonomic differences greatly influence the assessment due to highly deviating taxon abundances and/or strongly differing indicator values between mistaken taxa. Intercalibration exercises promote discussion about taxonomy, identify problematic taxa, and harmonize taxonomic concepts among diatomists. Thus, the shown analyst-induced variability of diatom counts may be reduced with an intercalibration exercise, thereby further refining the accuracy of water quality assessments.     

Some Nitzschia and related diatom species from fast ice samples in the Arctic and Antarctic

Summary Some Nitzschia and closely related species have been examined in the light and electron microscopes from fast ice samples in the Arctic and Antarctic. Nitzschia neofrigida, forming arborescent colonies, and Nitzschia promare, forming loose ribbon colonies, are described as new species, both probably included in the distribution of other similar species. A new combination, Auricula compacta, represents the first report of this genus from ice samples. Colony formation is reported for the first time in Nitzschia arctica and Nitzschia taeniiformis. No biopolar species were found and several reports of Arctic species in Antarctic ice samples have been refuted.     

Centric diatom algae (Centrophyceae) of ultraoligotrophic Lake Elgygytgyn and water bodies of its basin (Chukotka,Russia)

The electron microscopy study of algae from Lake Elgygytgyn and the water bodies of its basin has revealed 21 taxa of centric diatoms of specific and intraspecific ranks. Nine new species and varieties have been found, including Aulacoseira distans var. nivaloides, A. distans var. septentrionalis, Discostella guslyakovyi, which are rare for the flora of Russia; an endemic species (?) Pliocaenicus seckinae; and six interesting forms from the genus Aulacoseira identified only to the genus. The list of Centrophyceae of Beringia has been broadened.     

Effects of diatom mucilage on the growth and Morphology of marine algae

Germination and growth patterns were studied of germlings and sporelings of eight species of marine algae when grown on diatom mucilage. Whilst growths of green and brown algae were enhanced, growth of the red algae was inhibited. Morphologically abnormal sporelings of Ulva lactuca L. and Gigartina stellata (Stackh.) Batt. were obtained in the presence of the mucilage.     

A study of the suspended algae in the River Derwent,Derbyshire, U.K.

Studies of the composition and abundance of algae suspended in the water of the River Derwent, Derbyshire, were made during 1983. Samples were collected at intervals of 2–3 weeks from 6 sites on the lower reaches of the river. Variations in both composition and abundance of suspended algae occurred with variations in flow. At the uppermost sites cell densities were generally low (<500 cells ml^–1) and the algae consisted mainly of dislodged benthic diatoms. The density in suspension of these algae of benthic origin increased with flow. At downstream sites a true potamoplankton developed; during the summer this consisted chiefly of centric diatoms with Chlorophyta and Cryptophyta. Even at the lowermost site, the maximum recorded density of cells (3 860 cells ml^–1) and cell load (30 × 10⁹ cells s^–1) were lower in the Derwent than in some other British rivers. However, the cell density could still represent a substantial part (up to 32%) of the total particle density in the river.     

Photoproduction of hydrogen from water in hydrogenase-containing algae.

Scenedesmus obliquus and Chlorella vulgaris cells had active hydrogenase after dark anaerobic adaptation. Illumination of these algae with visible light led to an initial production of small quantities of hydrogen gas which soon ceased owing to production of oxygen by photolysis of water. The presence of oxygen-absorbing systems in a separate chamber, not in contact with the algae, gave only a slight stimulation of hydrogen production. Addition of sodium dithionite directly to the algae led to an extensive light-dependent production of hydrogen. This stimulation was due to oxygen removal by dithionite and not to its serving as an electron donor. 3-(3,4-Dichlorophenyl)-1,1-dimethylurea, an inhibitor of photosystem II, abolished all hydrogen photoproduction. Hydrogen evolution was not accompanied by CO₂ production and little difference was noted between autotrophically and heterotrophically grown cells. Hydrogen was not produced in a photosystem II mutant of Scenedesmus even in the presence of dithionite, establishing that water was the source of hydrogen via photosystems II and I. Hydrogen production was stimulated by the presence of glucose and glucose oxidase as an oxygen-absorbing system. Oxygen inhibited hydrogen photoproduction, even if oxygen was undetectable in the gas phase, if the algal solution did not contain an oxygen absorber. It was demonstrated that under these conditions hydrogenase was still active and the inability to produce hydrogen was probably due to oxidation of the coupling electron carrier.     

Effect of storage temperature on prokaryotic cell counts and community composition analysis from fixed and filtered seawater samples

Marine, pelagic prokaryotes commonly are visualized and enumerated by epifluorescence microscopy after staining with fluorescent, DNA-binding dyes and sample preparation and storage has a major influence on obtaining reliable estimates. However, sampling often takes place in remote locations and the recommended continuous sample storage at −20°C until further sample evaluation is often logistically challenging or infeasible. We investigated the effect of storage temperature on fixed and filtered seawater samples for subsequent enumeration of total prokaryotic cells and community composition analysis by fluorescence in situ hybridization (FISH). Prokaryotic abundance in surface seawater was not significantly different after 99 days when filters were stored either at room temperature (RT) or at −20°C. Furthermore, there was no loss in detection rates of phylotypes by FISH from filters stored at RT or −20°C for 28–30 days. We conclude that fixed and filtered seawater samples intended for total prokaryote counts or for FISH may be maintained long-term at room temperature, and this should logistically facilitate diverse studies of prokaryote ecology, biogeography, and the occurrence of human and fish/shellfish pathogens.