Investigation of Elemental Sulfur Speciation Transformation Mediated by Acidithiobacillus ferrooxidans

The speciation transformation of elemental sulfur mediated by the leaching bacterium Acidithiobacillus ferrooxidans was investigated using an integrated approach including scanning electron microscopy, transmission electron microscopy, Fourier transform infrared spectroscopy, energy dispersive X-ray spectroscopy, and X-ray absorption near edge spectroscopy (XANES). Our results showed that when grown on elemental sulfur powder, At. ferrooxidans ATCC23270 cells were first attached to sulfur particles and modified the surface sulfur with some amphiphilic compounds. In addition, part of the elemental sulfur powder might be converted to polysulfides. Furthermore, sulfur globules were accumulated inside the cells. XANES spectra of these cells suggested that these globules consisted of elemental sulfur bound to thiol groups of protein. Huan He and Cheng-Gui Zhang made equal contributions to this paper.     

Chemical state analysis of sulfur and phosphorus in biological samples by X-ray fluorescence

Double-crystal high-resolution X-ray fluorescence spectroscopy was applied to the chemical state analysis of sulfur and phosphorus in biological samples of leaves and bones. Both S²⁻ and S⁶⁺ states are present in all leaves. In plants infected with the mosaic virus, the abundance of S²⁻ state was found to be less than normal. Furthermore, the total sulfur content of leaves with the mosaic virus was less than that in normal leaves. From these results we have concluded that the mosaic virus is related to the decrease in cysteine sulfur (S²⁻), which is an essential component in amino acids. Most of the phosphorus in leaves and bones was found to be in P⁵⁺ state. A small amount of P³⁺ state, however, was also detected.     

Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics

Many questions regarding proteins involved in microbial sulfur metabolism remain unsolved. For sulfur respiration at low pH, the terminal electron acceptor is still unclear. Desulfurella amilsii is a sulfur-reducing bacterium that respires elemental sulfur (S⁰) or thiosulfate, and grows by S⁰ disproportionation. Due to its versatility, comparative studies on D. amilsii may shed light on microbial sulfur metabolism. Requirement of physical contact between cells and S⁰ was analyzed. Sulfide production decreased by around 50% when S⁰ was trapped in dialysis membranes, suggesting that contact between cells and S⁰ is beneficial, but not strictly needed. Proteome analysis was performed under the aforementioned conditions. A Mo-oxidoreductase suggested from genome analysis to act as sulfur reductase was not detected in any growth condition. Thiosulfate and sulfite reductases showed increased abundance in thiosulfate-reducing cultures, while rhodanese-like sulfurtransferases were highly abundant in all conditions. DsrE and DsrL were abundantly detected during thiosulfate reduction, suggesting a modified mechanism of sulfite reduction. Proteogenomics suggest a different disproportionation pathway from what has been reported. This work points to an important role of rhodaneses in sulfur processes and these proteins should be considered in searches for sulfur metabolism in broader fields like meta-omics.     

Seasonal changes in the structure of the anoxygenic photosynthetic bacterial community in Lake Shunet,Khakassia

Seasonal studies of the anoxygenic phototrophic bacterial community of the water column of the saline eutrophic meromictic Lake Shunet (Khakassia) were performed in 2002 (June) and 2003 (February–March and August). From the redox zone down, the lake water was of dark green color. Green sulfur bacteria predominated in every season. The maximum number of green sulfur bacteria was 10⁷ cells/ml in summer and 10⁶ cells/ml in winter. A multi-syringe stratification sampler was applied for the study of the fine vertical distribution of phototrophs in August 2003; the sampling was performed every 5 cm. A 5-cm-thick pink-colored water layer inhabited by purple sulfur bacteria was shown to be located above the layer of green bacteria. The species composition and ratio of purple bacterial species depended on the sampling depth and on the season. In summer, the number of purple sulfur bacteria in the layer of pink water was 1.6 × 10⁸ cells/ml. Their number in winter was 3 × 10⁵ cells/ml. In the upper oxygen-containing layer of the chemocline the cells of purple nonsulfur bacteria were detected in summer. The maximum number of nonsulfur purple bacteria, 5 × 10² cells/ml, was recorded in August 2003. According to the results of the phylogenetic analysis of pure cultures of the isolated phototrophic bacteria, which were based on 16S rDNA sequencing, green sulfur bacteria were close to Prosthecochloris vibrioformis, purple sulfur bacteria, to Thiocapsa and Halochromatium species, and purple nonsulfur bacteria, to Rhodovulum euryhalinum and Pinkicyclus mahoneyensis.     

Sulfur Transformation in Microbially Mediated Pyrite Oxidation by Acidithiobacillus ferrooxidans: Insights From X-ray Photoelectron Spectroscopy-Based Quantitative Depth Profiling

The oxidation of pyrite and other sulfides is responsible for the generation of acid mine drainage and acid rock drainage, which leads to further contamination of soil and water. In these processes, microbial oxidation usually prevails over chemical oxidation. To determine the mechanism of microbial oxidation of pyrite, the interaction of Acidithiobacillus ferrooxidans with pyrite was comprehensively studied, and the sulfur transformation in the interaction was disclosed using X-ray photoelectron spectroscopy (XPS) depth profiling. Abundant bacterial cells attach to pyrite surface and form biofilms, which greatly enhances surface corrosion and results in two types of etching pits: bacteria-driven rod-shaped and chemically driven hexagonal etching pits. The details of XPS depth profiles on a reacted pyrite surface reveal that the surface sulfur was first oxidized into elemental sulfur. Thereafter, elemental sulfur was further oxidized to intermediate species S₂O₃^2?, SO₃^2?, and ultimately to SO₄^2?. The oxidation sequence of sulfur is S₂^2?/S^2?→S_n^2?, S⁰→SO₃^2?, and S₂O₃^2?→SO₄^2?. Meanwhile, the remnant ferrous iron in the surface layer was released into solution and subsequently oxidized into Fe³⁺ by A. ferrooxidans and dissolved oxygen, which in turn enhanced the oxidation of sulfur. Fe³⁺, sulfate, and other ions (e.g., K⁺, Na⁺, NH₄⁺) in the solution precipitated as jarosite, hydroniumjarosite, and ammoniojarosite. On the basis of results, a three-staged model is proposed to interpret the kinetics of microbial oxidation of pyrite.     

Cobalt binding in the photosynthetic bacterium R. sphaeroides by X-ray absorption spectroscopy

Cobalt is an important oligoelement required for bacteria; if present in high concentration, exhibits toxic effects that, depending on the microorganism under investigation, may even result in growth inhibition. The photosynthetic bacterium Rhodobacter (R.) sphaeroides tolerates high cobalt concentration and bioaccumulates Co²⁺ ion, mostly on the cellular surface. Very little is known on the chemical fate of the bioaccumulated cobalt, thus an X-ray absorption spectroscopy investigation was conducted on R. sphaeroides cells to gain structural insights into the Co²⁺ binding to cellular components. X-ray absorption near-edge spectroscopy and extended X-ray absorption fine structure measurements were performed on R. sphaeroides samples containing whole cells and cell-free fractions obtained from cultures exposed to 5 mM Co²⁺. An octahedral coordination geometry was found for the cobalt ion, with six oxygen-ligand atoms in the first shell. In the soluble portion of the cell, cobalt was found bound to carboxylate groups, while a mixed pattern containing equivalent amount of two sulfur and two carbon atoms was found in the cell envelope fraction, suggesting the presence of carboxylate and sulfonate metal-binding functional groups, the latter arising from sulfolipids of the cell envelope.     

STUDIES ON THE METABOLISM OF A SULFUR-OXIDIZING BACTERIUM: I. OXIDATION OF SULFUR

1. Thiobacillus thiooxidans, isolated in our laboratory, was foundto oxidize sulfur, but not thiosulfate. Tetrathionate is alsooxidized slightly. Its ability to oxidize sulfur is inactivatedeven by such a mild treatment as keeping the cells in a frozenstate.
2. Inhibitory action of alcohols on the sulfur oxidationincreasesas the length of carbon chain of alcohols increases.Carboxylicacids do not inhibit the sulfur oxidation at pH abovetheirpK, while they strongly inhibit the reaction at pH belowthepK.
3. The sulfur oxidation is inhibited by cyanide, azide,diethyldithiocarbamateand carbon monoxide, and the inhibitionby carbon monoxide isnot reversed by light. These results suggestthe presence ofmetal enzymes in the sulfur oxidation system.The terminal enzymeof this reaction appears to be differentfrom the usual cytochromeoxidase.

(Received May 13, 1960; )     

STUDIES ON THE METABOLISM OF AUTOTROPHIC BACTERIA : II. THE NATURE OF THE CHEMOSYNTHETIC REACTION

In a study of chemosynthesis (the fixation of CO₂ by autotrophic bacteria in the dark) in Thiobacillus thiooxidans, the data obtained support the following conclusions: 1. CO₂ can be fixed by "resting cells" of Thiobacillus thiooxidans; the fixation is not "growth bound." 2. The physiological condition of the cell is of considerable importance in determining CO₂ fixation. 3. CO₂ fixation can occur in the absence of oxidizable sulfur in "young" cells. The extent of this fixation appears to be dependent upon the pCO₂. 4. CO₂ fixation can also occur under anaerobic conditions and the presence of sulfur does not influence such fixation. 5. However, in the CO₂ fixation by cells in the absence of sulfur, only a limited amount of CO₂ can be fixed. This amount is approximately 40 µl. CO₂ per 100 micrograms bacterial nitrogen. After a culture has utilized this amount of CO₂ it no longer has the ability to fix CO₂ but releases it during its respiration. 6. Relatively short periods of sulfur oxidation can restore the ability of cells to fix CO₂ under conditions where sulfur oxidation is prevented. 7. It is possible to oxidize sulfur in the absence of CO₂ and to store the energy thus formed within the cell. It is then possible to use this energy at a later time for the fixation of CO₂ in the entire absence of sulfur oxidation. 8. Cultures of Thiobacillus thiooxidans respiring on sulfur utilize CO₂ in a reaction which proceeds to a zero concentration of CO₂ in the atmosphere. 9. CO₂ may act as an oxidizing agent for sulfur. 10. Hydrogen is not utilized by the organism. 11. It is possible to selectively inhibit sulfur oxidation and CO₂ fixation.     

Kinetic Constant Variability in Bacterial Oxidation of Elemental Sulfur

Wide ranges of growth yields on sulfur (from 2.4 × 10¹⁰ to 8.1 × 10¹¹ cells g⁻¹) and maximum sulfur oxidation rates (from 0.068 to 1.30 mmol liter⁻¹ h⁻¹) of an Acidithiobacillus ferrooxidans strain (CCM 4253) were observed in 73 batch cultures. No significant correlation between the constants was observed. Changes of the Michaelis constant for sulfur (from 0.46 to 15.5 mM) in resting cells were also noted.     

Buoyant density changes due to intracellular content of sulfur in Chromatium warmingii and Chromatium vinosum

Average specific density of individual cells of pure cultures of Chromatium warmingii and Chromatium vinosum were measured by isopicnic gradient centrifugation with Percoll during growth at constant illumination as a function of the increasing content of intracellular sulfur. Cell number and volume, bacteriochlorophyll a, sulfide, and sulfur were followed in the cultures along with cellular buoyant density. Poly--hydroxybutyrate was monitored at several points during growth of the cultures. The density of C. warmingii changed from 1.071 to 1.108 g cm^-3 (sulfur content per cell varied from 0 to 1.71pg). C. vinosum changed its density from 1.096 to 1.160 g cm^-3 (sulfur content per cell varied from 0 to 0.43 pg). Maximum sulfur content in pg of sulfur per m³ of cell volume were 0.178 for C. warmingii and 0.294 for C. vinosum. Measurement of the differences in buoyant density, volume and sulfur content before and after ethanol extraction of cells with and without intracellular sulfur, allowed tentatively to estimate the density of sulfur inside the cells as 1.219 g cm^-3. Isolation of sulfur globules and centrifugation in density gradients gave a density higher than 1.143 g cm^-3 for these intracellular inclusions.Non-common abbreviations Bchl Bacteriochlorophyll - DMB Density Marker Beads - PHB poly--hydroxybutyrate     

SCANNING ELECTRON MICROSCOPY AND ENERGY DISPERSIVE X-RAY ANALYSIS OF CHALK SECRETING LEAF GLANDS OF OF PLUMBAGO CAPENSIS

Chalk secreting leaf glands of Plumbago capensis Thunb. were examined by polarized reflected light microscopy, scanning electron microscopy, x-ray diffraction, and energy dispersive x-ray analysis. There are about 23 glands per mm² on the lower leaf surface and none on the upper surface. Each gland measures 20–30 μm in diam and consists of four small secretory cells surrounded by four subsidiary cells. Secretion of chalk is apparently through a pore in the surface of each secretory cell. The secreted material was crystalline and x-ray diffraction confirmed the presence of two minerals: calcite (CaCO₃) and nesquehonite (MgCO₃ · 3H₂O). Energy dispersive x-ray analysis revealed the presence of magnesium, silicon, phosphorus, sulfur, chlorine, potassium, and calcium in the epidermal cells. However, only calcium and magnesium and traces of silicon were detected in the secreted material. A distribution analysis showed calcium and magnesium to be uniformly distributed through the secreted material.     

Comparative study of sulfur utilization and speciation transformation of two elemental sulfur species by thermoacidophilic Archaea Acidianus manzaensis YN-25

The sulfur utilization and speciation transformation of two elemental sulfur species (orthorhombic α-S₈ and amorphous μ-S) by thermoacidophilic Archaea strain Acidianus manzaensis YN-25 was comparatively studied. The results of cell growth and sulfur oxidation behavior showed that A. manzaensis cultured on μ-S grew faster (about 24 h earlier to reach stationary phase than that on α-S₈) and produced more H⁺ and SO₄^2?. Results of scanning electron microscopy indicated that the surfaces of μ-S and α-S₈ were differently bio-corroded by A. manzaensis into loose porosities and pits, respectively. Fourier transform-infrared spectroscopy analysis indicated both μ-S and α-S₈ were adsorbed by the cells. X-ray diffraction and Raman spectra analysis indicated that μ-S was mostly converted into α-S₈ after A. manzaensis cell growth while α-S₈ was not transformed into a different allotrope. The fitted result of sulfur K edge XANES spectra further showed that the μ-S after growth of A. manzaensis were composed of 92.1% α-S₈ and 7.9% μ-S, while no change in composition for α-S₈ was found.     

Phylogenic status of a purple sulfur bacterium and its bloom in Lake Kaiike

Two bacterial species at the upper boundary of the H₂S-containing lower layer of Lake Kaiike, a purple sulfur bacterium and Macromonas sp., markedly changed their population densities in a single year (maximum cell numbers ranged between 10⁶ and <10³ cells ml^–1), although neither species ever entirely disappeared from the lake over at least the past 30 years. Genetic characteristics based on the sequence of the 16S rDNA of the purple sulfur bacterium showed it to be a new species of the Chromatiaceae family. This bloom of purple sulfur bacterium occurred when the H₂S layer was disturbed by an external intrusion of seawater.     

Search for polythionates in cultures of Chromatium vinosum after sulfide incubation

Cultures of Chromatium vinosum, devoid of sulfur globules, were supplemented with sulfide and incubated under anoxic conditions in the light. The concentrations of sulfide, polysulfides, thiosulfate, polythionates and elemental sulfur (sulfur rings) were monitored for 3 days by ion-chromatography and reversed-phase HPLC. While sulfide disappeared rapidly, thiosulfate and elemental sulfur (S₆, S₇ S₈ rings) were formed. After sulfide depletion, the concentration of thiosulfate decreased fairly rapidly, but elemental sulfur was oxidized very slowly to sulfate. Neither polysulfides (S _x ^2– ), polythionates (S_nO ₆ ^2– , n=4–6), nor other polysulfur compounds could be detected, which is in accordance with the fact that sulfide-grown cells were able to oxidize polysulfide without lag. The nature of the intracellular sulfur globules is discussed.     

ROLE OF SULFUR METABOLISM IN COPPER-RESISTANCE OF YEAST

Cells of a normal yeast strain and of its copper-resistant substrainwere more severely injured by copper treatment under sulfurdeficiency than under nitrogen or carbon deficiency. Even underthese starved conditions, the resistant substrain gave higherviable counts than the parent strain after the copper treatment.Several hours were needed for the sulfur-starved cells to recovertheir copper-resistance when resupplied with sulfur. The observed effect of the amount of sulfur supply on the cellyield was not contradictory to the idea that resistant cellsuse for their resistance mechanism a part of sulfur they absorb.Methionine made cells more sensitive to copper, and this effectwas antagonized by ethionine to some extent. The importance of sulfur metabolism in copper resistance isdiscussed. ¹This work was supported by a Grant in Aid for Fundamental ScientificResearch, Ministry of Education, Japan. ²Present address: Konan University, Kobe, Japan. (Received October 8, 1959; )     

Sulfur‐Embedded Activated Multichannel Carbon Nanofiber Composites for Long‐Life,High‐Rate Lithium–Sulfur Batteries

Despite the 3–5 fold higher energy density than the conventional Li‐ion cells at a lower cost, commercialization of Li–S batteries is hindered by the insulating nature of sulfur and the dissolution of intermediate polysulfides (Li₂S _X , 4 < X ≤ 8) into the electrolyte. The authors demonstrate here multichannel carbon nanofibers that are composed of parallel mesoporous channels connected with micropores as sulfur containment. In addition, hydroxyl functional groups are formed on the carbon surface through a chemical activation to enhance the interaction between sulfur and carbon. In the sulfur embedded composite, the mesoporous multichannel enhances the active material utilization and sulfur loading, while the micropores act as a reaction chamber for sulfur component and trap site for polysulfide with the assistance of the functional groups. This sulfur–carbon composite electrode with 2.2 mg cm^?2 sulfur displays excellent performance with high rate capability (initial capacity of 1351 mA h g^?1 at C/5 rate and 847 mA h g^?1 at 5C rate), maintaining 920 mA h g^?1 even after 300 cycles (a decay of 0.07% per cycle). Furthermore, a stable reversible capacity of as high as ≈1100 mA h g^?1 is realized with a higher sulfur loading of 4.6 mg cm^?2.     

Fe-S Cluster Biogenesis in Isolated Mammalian Mitochondria: COORDINATED USE OF PERSULFIDE SULFUR AND IRON AND REQUIREMENTS FOR GTP,NADH, AND ATP*

Iron-sulfur (Fe-S) clusters are essential cofactors, and mitochondria contain several Fe-S proteins, including the [4Fe-4S] protein aconitase and the [2Fe-2S] protein ferredoxin. Fe-S cluster assembly of these proteins occurs within mitochondria. Although considerable data exist for yeast mitochondria, this biosynthetic process has never been directly demonstrated in mammalian mitochondria. Using [³⁵S]cysteine as the source of sulfur, here we show that mitochondria isolated from Cath.A-derived cells, a murine neuronal cell line, can synthesize and insert new Fe-³⁵S clusters into aconitase and ferredoxins. The process requires GTP, NADH, ATP, and iron, and hydrolysis of both GTP and ATP is necessary. Importantly, we have identified the ³⁵S-labeled persulfide on the NFS1 cysteine desulfurase as a genuine intermediate en route to Fe-S cluster synthesis. In physiological settings, the persulfide sulfur is released from NFS1 and transferred to a scaffold protein, where it combines with iron to form an Fe-S cluster intermediate. We found that the release of persulfide sulfur from NFS1 requires iron, showing that the use of iron and sulfur for the synthesis of Fe-S cluster intermediates is a highly coordinated process. The release of persulfide sulfur also requires GTP and NADH, probably mediated by a GTPase and a reductase, respectively. ATP, a cofactor for a multifunctional Hsp70 chaperone, is not required at this step. The experimental system described here may help to define the biochemical basis of diseases that are associated with impaired Fe-S cluster biogenesis in mitochondria, such as Friedreich ataxia.     

STUDIES ON THE METABOLISM OF THE AUTOTROPHIC BACTERIA : III. THE NATURE OF THE ENERGY STORAGE MATERIAL ACTIVE IN THE CHEMOSYNTHETIC PROCESS

In the autotrophic bacterium, Thiobacillus thiooxidans, the oxidation of sulfur is coupled to transfers of phosphate from the medium to the cells. CO₂ fixation is coupled to transfers of inorganic phosphate from the cells to the medium and is dependent, in the absence of concomitant sulfur oxidation, upon the amount of phosphate previously taken up during sulfur oxidation. The energy reservoir, which is formed by sulfur oxidation in the absence of CO₂ and which can be released for the fixation of CO₂ under conditions which do not permit sulfur oxidation, is a phosphorylated compound and the data suggest that the energy is stored in the cell as phosphate bond energy. It is possible to oxidize sulfur at a constant rate for hours in the absence of CO₂. The phosphate energy formed during this process is probably released by cell phosphotases. It is possible to inhibit these phosphotases by means of inorganic phosphate and thus to inhibit sulfur oxidation in the absence of CO₂. In the presence of CO₂, where alternative uses for the phosphate energy are available, the inhibition is relieved. Sulfur oxidation (energy input) is coupled, not to CO₂ fixation, but to phosphate esterification. CO₂ fixation (energy utilization) is coupled with phosphate release.     

The sulfur formation system mediating extracellular cysteine-cystine recycling in Fervidobacterium islandicum AW-1 is associated with keratin degradation

Most extremophilic anaerobes possess a sulfur formation (Suf) system for Fe–S cluster biogenesis. In addition to its essential role in redox chemistry and stress responses of Fe–S cluster proteins, the Suf system may play an important role in keratin degradation by Fervidobacterium islandicum AW-1. Comparative genomics of the order Thermotogales revealed that the feather-degrading F. islandicum AW-1 has a complete Suf-like machinery (SufCBDSU) that is highly expressed in cells grown on native feathers in the absence of elemental sulfur (S⁰). On the other hand, F. islandicum AW-1 exhibited a significant retardation in the Suf system-mediated keratin degradation in the presence of S⁰. Detailed differential expression analysis of sulfur assimilation machineries unveiled the mechanism by which an efficient sulfur delivery from persulfurated SufS to SufU is achieved during keratinolysis under sulfur starvation. Indeed, addition of SufS–SufU to cell extracts containing keratinolytic proteases accelerated keratin decomposition in vitro under reducing conditions. Remarkably, mass spectrometric analysis of extracellular and intracellular levels of amino acids suggested that redox homeostasis within cells coupled to extracellular cysteine and cystine recycling might be a prerequisite for keratinolysis. Taken together, these results suggest that the Suf-like machinery including the SufS–SufU complex may contribute to sulfur availability for an extracellular reducing environment as well as intracellular redox homeostasis through cysteine released from keratin hydrolysate under starvation conditions.     

Binding Mechanism and Electrochemical Properties of M13 Phage-Sulfur Composite

Self-assembly of nanostructured materials has been proven a powerful technique in material design and synthesis. By phage display screening, M13 phage was found to strongly bind sulfur particles. Fourier transform infrared and X-ray photoelectron spectroscopy measurements indicated that the strong sulfur-binding ability of M13 phage derives from newly generated S-O and C-S bonds. Using this phage assembled sulfur composite in a lithium battery, the first discharge capacity reached 1117 mAh g^-1, which is more than twice that of the sulfur only cathode. Besides, the negative polysulfide shuttle effect in a lithium-sulfur battery was significantly suppressed.