Fissure and mineral weathering impacts on heavy metal distribution in sludge-amended soil

The purpose of this study was to follow the distribution and migration of the metallic trace elements (MTE) zinc (Zn), lead (Pb) and cadmium (Cd) in a sludge-amended soil, both at the metric scale of the bulk soil horizons and at the micrometric scale of mineral weathering microsites. In the soil scale approach, the MTE contents determined by ICP-AES and ICP-MS analyses in amended and control soil samples were compared through enrichment factor calculation to assess the extent to which spread MTE may have moved throughout the soil profile. In the mineral scale approach, the MTE were analysed on thin sections in specific weathering microsystems including (1) rock-forming minerals (amphiboles, biotites, plagioclases) and their specific weathering clay minerals; (2) weathering clayey plasma, which obliterates the original rock structure with newly-formed clay minerals; and (3) the fissural network with its clay minerals. The purpose of this mineralogical approach, using X-ray diffraction (XRD) for mineral identification and electron probe microanalyses (EPMA) for MTE analyses, was to determine where and at which concentrations spread MTE can concentrate within the soil and weathered rock. The chemical analyses of MTE in the bulk samples reveal strong Cd and Pb accumulation at the surface of the amended soil due to anthropic contamination. Cadmium undergoes a vertical migration in deeper soil horizons, whereas Zn and Pb do not show significative transfer within the amended soil. Accurate MTE analyses in weathering microsites indicate that, except in plagioclase microsites, (1) Zn and Cd accumulate in clay minerals from surface horizons and migrate downwards through the fissural system, and (2) Pb does not show any significant mobility throughout the amended soil. The MTE migration evidenced through the fissural system gives rise to two main environmental problems. Zn and Cd have the potential to move several meters deep along fissures in the soil profiles and may represent potential contaminants for unconfined aquifer. Secondly, because the plant root system grows preferentially along soil fissural pattern, it may adsorb MTE.     

Scanning electron microscopy of earth mined and eaten by mountain gorillas in the Virunga Mountains,Rwanda

The sand fractions of weathered regolith (subsoil) sediments from the flanks of Visoke Volcano in the Virunga Mountains, mined, pulverized, and eaten by mountain gorillas, were analyzed by scanning electron microscope (SEM) and energy-despersive spectrometry (EDS) to determine the stimulus of geophagic behavior. The samples show a mix of weathered and volcanic minerals consisting primarily of quartz, apatite, analbite, sanidine, amphibole, ilmenite, and magnetite. The ratio of weathered to fresh grains is approximately 6:1 for the coarse sands (2 mm – 250 μm) and 13:1 for the fine fractions (63 – 250 μm) with the fresh grains very extensively fractured and abraded after grinding and rubbing by gorilla hand. In many cases the core of individual grains was exposed beneath a surface cover extensively etched by chemical weathering and often coated with Fe and Al plus clay minerals. Ground quartz grains, for example, showed surface fractures and abrasion features equivalent to microtextures produced by transport in continental glaciers. Grinding of earth materials produces a high percentage of angular fragments of fine sand size that may or may not play some role in curing intestinal ailments or countering dietary deficiencies. In particular, the grinding of earth materials shows the immense power of the gorilla hand as a pulverizing force making coarse material finer and presumably assisting in the ingesting process. The number of halloysite clay minerals present in the samples might assist in countering the effects of diarrhea.     

Transformation of clay minerals caused by an alkaliphilic cyanobacterial community

Transformation of clay minerals (smectite-zeolite, illite, kaolinite, and bentonite) and admixtures of iron oxides (hydroxides) under the action of an alkaline cyanobacterial community was studied. The results demonstrate that the processes of transformation of clay minerals such as intensification of removal of exchange bases and dissolution of silicates and iron oxides occurred in the presence of the alkaliphilic cyanobacterial community. The main factor that determines resistance of a mineral to biochemical weathering is its composition. Transformations of clay minerals in the course of active cyanobacterial photosynthesis (up to 14 days) and at decomposition of organic matter (OM) (28–60 days) are different. For smectite-zeolite and illite, these processes are dissolution of silicates and oxides (removal of Si and Fe) and removal of exchange bases (K), which were observed at both the of biomass production and OM destruction stages. For two other clays, the processes of neosynthesis are more typical: formation of carbonates (most probably siderite for bentonite clay and Mg-calcite for kaolin clay) and transformation of ferrihydrite into the more thermodynamically stable goethite.     

Clay Mineralogy of Central Victorian (Creswick) Soils: Clay Mineral Contents as a Possible Tool of Environmental Indicator

The clay mineralogy and heavy metal/metalloid (As, Pb and Cu) contents of soils developed on the various rock units in a central highlands environment in Victoria (Creswick, Australia) have been investigated. The clay minerals identified showed an order of abundance as: kaolinite ? illite > smectite > mixed-layer (ML) ≈ vermiculite. The soil clay mineralogy did not change systematically with depth (0～ 10, 10～ 20 and 20～ 30 cm) and showed large variations spatially. The high proportion of kaolinite was probably due to the removal of 2:1 phyllosilicates by the formation of 1:1 kaolinite through weathering, which also reduced the cation exchange capacity (CEC) and electrical conductivity (EC, soil: water ratio of 1:5) of soils by aging. Soils were classified as silty loam to loam with a low clay size (≤ 2μ m) fraction. The soils were acidic to moderately acidic with pH ranging from 4.5 to 7.1, averaging 5.7. Concentrations of As, Pb, and Cu (average values 24.3, 16.7 and 11.0 mg/kg, respectively) did not show an association with the clay mineral contents except vermiculite. The occurrence of smectite and mixed-layer clay contents, although far lower than kaolinite and illite, contributed significantly to CEC of soils. The study area was affected by mining, high natural background As values dominate the area and the role of clay minerals in fixation of metalloid/metals was found to be less significant. Low organic matter content (average ～ 6.5%), low soil surface area (average ～ 1.0 m²/g) and the high proportion of kaolinite mineral content result in a limited ability to fix heavy metals. The role of Fe oxides appeared to be a key influence in the fixation of As and other potentially toxic metals, rather than the clay minerals, and therefore requires further research. This work highlighted the importance of the determination of types and amounts of clay minerals of natural soils in environmental management.     

Depth-Related Changes in Community Structure of Culturable Mineral Weathering Bacteria and in Weathering Patterns Caused by Them along Two Contrasting Soil Profiles

Bacteria play important roles in mineral weathering and soil formation. However, few reports of mineral weathering bacteria inhabiting subsurfaces of soil profiles have been published, raising the question of whether the subsurface weathering bacteria are fundamentally distinct from those in surface communities. To address this question, we isolated and characterized mineral weathering bacteria from two contrasting soil profiles with respect to their role in the weathering pattern evolution, their place in the community structure, and their depth-related changes in these two soil profiles. The effectiveness and pattern of bacterial mineral weathering were different in the two profiles and among the horizons within the respective profiles. The abundance of highly effective mineral weathering bacteria in the Changshu profile was significantly greater in the deepest horizon than in the upper horizons, whereas in the Yanting profile it was significantly greater in the upper horizons than in the deeper horizons. Most of the mineral weathering bacteria from the upper horizons of the Changshu profile and from the deeper horizons of the Yanting profile significantly acidified the culture media in the mineral weathering process. The proportion of siderophore-producing bacteria in the Changshu profile was similar in all horizons except in the Bg2 horizon, whereas the proportion of siderophore-producing bacteria in the Yanting profile was higher in the upper horizons than in the deeper horizons. Both profiles existed in different highly depth-specific culturable mineral weathering community structures. The depth-related changes in culturable weathering communities were primarily attributable to minor bacterial groups rather than to a change in the major population structure.     

Palaeomagnetic ages of late cretaceous and tertiary weathered profiles in the Eromanga Basin,Queensland

Two iron-enriched weathered profiles, both widely distributed in the Eromanga and Surat Basins of Queensland, have been investigated palaeomanetically. Normal and reversed polarities have been obtained from each profile, indicating that the weathering events spanned at least one reversal of the geomagnetic field. The minimum duration of weathering for the older of the two profiles is estimated as 10,000 years. The palaeomagnetic directions when compared with the Late Cretaceous and Cainozoic apparent polar wander curve for Australia give a Maastrichtian to Early Eocene age for one profile and an approximately Late Oligocene age for the other. These ages are consistent with times of high palaeotemperature indicated by oxygen isotope analysis of marine fossils of the Southeast Indian Ocean. The pole position for the younger profile is not significantly different from pole positions obtained in previous palaeomagnetic investigations of weathered rocks in Western Australia, South Australia and the Northern Territory, supporting the long-held view of a mid-Tertiary continent-wide weathering event in Australia.     

Microbial reduction of structural iron in interstratified illite-smectite minerals by a sulfate-reducing bacterium

Clay minerals are ubiquitous in soils, sediments, and sedimentary rocks and could coexist with sulfate‐reducing bacteria (SRB) in anoxic environments, however, the interactions of clay minerals and SRB are not well understood. The objective of this study was to understand the reduction rate and capacity of structural Fe(III) in dioctahedral clay minerals by a mesophilic SRB, Desulfovibrio vulgaris and the potential role in catalyzing smectite illitization. Bioreduction experiments were performed in batch systems, where four different clay minerals (nontronite NAu‐2, mixed‐layer illite‐smectite RAr‐1 and ISCz‐1, and illite IMt‐1) were exposed to D. vulgaris in a non‐growth medium with and without anthraquinone‐2,6‐disulfonate (AQDS) and sulfate. Our results demonstrated that D. vulgaris was able to reduce structural Fe(III) in these clay minerals, and AQDS enhanced the reduction rate and extent. In the presence of AQDS, sulfate had little effect on Fe(III) bioreduction. In the absence of AQDS, sulfate increased the reduction rate and capacity, suggesting that sulfide produced during sulfate reduction reacted with the phyllosilicate Fe(III). The extent of bioreduction of structural Fe(III) in the clay minerals was positively correlated with the percentage of smectite and mineral surface area of these minerals. X‐ray diffraction, and scanning and transmission electron microscopy results confirmed formation of illite after bioreduction. These data collectively showed that D. vulgaris could promote smectite illitization through reduction of structural Fe(III) in clay minerals.     

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Minerals constitute an ecological niche poorly investigated in the soil, in spite of their important role in biogeochemical cycles and plant nutrition. To evaluate the impact of minerals on the structure of the soil bacterial communities, we compared the bacterial diversity on mineral surfaces and in the surrounding soil. Three pure and calibrated minerals (apatite, plagioclase and a mix of phlogopite-quartz) were buried into the organo-mineral layer of a forest soil. After a 4-year incubation in soil conditions, mineral weathering and microbial colonization were evaluated. Apatite and plagioclase were the only two significantly weathered minerals. The analysis of the 16S rRNA gene sequences generated by the cloning-sequencing procedure revealed that bacterial diversity was higher in the surrounding soil and on the unweathered phlogopite-quartz samples compared with the other minerals. Moreover, a multivariate analysis based on the relative abundance of the main taxonomic groups in each compartments of origin demonstrated that the bacterial communities from the bulk soil differed from that colonizing the minerals. A significant correlation was obtained between the dissolution rate of the minerals and the relative abundance of Beta-proteobacteria detected. Notably, many sequences coming from bacteria colonizing the mineral surfaces, whatever the mineral, harbored high similarity with efficient mineral weathering bacteria belonging to Burkholderia and Collimonas genera, previously isolated on the same experimental site. Taken together, the present results provide new highlights concerning the bacterial communities colonizing minerals surfaces in the soil and suggests that the minerals create true ecological niches: the mineralosphere.     

The reserve of weatherable primary silicates impacts the accumulation of biogenic silicon in volcanic ash soils

Banana plantlets (Musa acuminata cv Grande Naine) cultivated in hydroponics take up silicon proportionally to the concentration of Si in the nutrient solution (0–1.66 mM Si). Here we study the Si status of banana plantlets grown under controlled greenhouse conditions on five soils developed from andesitic volcanic ash, but differing in weathering stage. The mineralogical composition of soils was inferred from X-ray diffraction, elemental analysis and selective chemical/mineralogical extractions. With increasing weathering, the content of weatherable primary minerals decreased. Conversely, clay content increased and stable secondary minerals were increasingly dominant: gibbsite, Fe oxides, allophane, halloysite and kaolinite. The contents of biogenic Si in plant and soil were governed by the reserve of weatherable primary minerals. The largest concentrations of biogenic Si in plant (6.9–7 g kg⁻¹) and soil (50–58 g kg⁻¹) occurred in the least weathered soils, where total Si content was above 225 g kg⁻¹. The lowest contents of biogenic Si in plant (2.8–4.3 g kg⁻¹) and soil (8–31 g kg⁻¹) occurred in the most weathered desilicated soils enriched with secondary oxides and clay minerals. Our data imply that soil weathering stage directly impacted the soil-to-plant transfer of silicon, and thereby the stock of biogenic Si in a soil–plant system involving a Si-accumulating plant. They further imply that soil type can influence the silicon soil–plant cycle and its hydrological output.     

Potassium supplying capacity of northeastern Portuguese soils

In Portugal, the response to K application is often inconsistent with the Egner-Riehm values for available K. This is partly related to high K reserves of some soils. Twenty surface soils representative of different parent materials from NE Portugal were studied to determine their K supplying capacity. Continuous cropping with perennial ryegrass permitted the assessment of the relative ability of soils to release non-exchangeable K. Soils were classified in the range of available K from medium to very high. However, their ability to supply K in the short and long term are very different. In some soils K status measured by plant growth does not fall appreciably, whilst others are rapidly exhausted, and 30% of them are very deficient in K. The supplying capacity varied both with the nature of the parent material and the degree of weathering. The soils deficient in K are those derived from basic rocks and those with more weathered clay minerals. This is the case of the soils with the largest content of organic matter where the dominant clay minerals were kaolinite and vermiculite. Soils that have the highest capacity for supplying K are highly micaceous, like those developed from mica schists, phyllites or river alluvium. In fact the amount of K released from non-exchangeable form is well correlated with the amount of illite in the clay fraction. Soil types and K buffer power coupled with available K must be taken into account when planning any application of K.     

Dynamic role of “illite-like” clay minerals in temperate soils: facts and hypotheses

Analysis of new data and reinterpretation of published information for clay minerals found in temperate climate soil profiles indicates that there is often a gradient of “illite-like” clay minerals with depth. We used the term “illite-like” because these observations are based on X-Ray Diffractogram patterns and not on layer charge measurements which allow to define properly illite. It appears that “illite-like” layers are concentrated in the upper, organic - rich portion of the soil profile both under grassland and forest vegetation. “Illite-like” layer quantity seems directly related to soil potassium status. Indeed, intensive agriculture practises without potassium fertilization reduce “illite-like” content in surface soils, whereas several years of potassic fertilization without plant growth can increase “illite-like” content. The potassic soil clay mineral, illite, is particularly important in that it can be the major source of readily available potassium for plants. Spatial and temporal dynamics of clay minerals should be related to the potassium cycle. We propose that the frequently observed general trend of increasing exchangeable potassium in the top soil can be correlated with an increase in “illite-like” in the clays and that the decrease of potassium caused by intensive agricultural practices leads to “illite-like” layer destabilization. This vision of “illite-like” layer as a potassium reservoir refueled by plants and emptied by intensive cropping renews the concept of potassium availability and indicates a need to be discussed as well in natural ecosystems as in cultivated ecosystems.     

Clay minerals in Cenozoic sediments off Cape Roberts (McMurdo Sound, Antarctica) reveal palaeoclimatic history

The clay mineral assemblages of the ca. 1600 m thick Cenozoic sedimentary succession recovered at the CRP-1, CRP-2/2A and CRP-3 drill sites off Cape Roberts on the McMurdo Sound shelf, Antarctica, were analysed in order to reconstruct the palaeoclimate and the glacial history of this part of Antarctica. The sequence can be subdivided into seven clay mineral units that reflect the transition from humid to subpolar and polar conditions. Unit I (35-33.6 Ma) is characterised by an almost monomineralic assemblage consisting of well crystalline, authigenic smectite, and therefore does not allow a palaeoclimatic reconstruction. Unit II (33.6-33.1 Ma) has also a monomineralic clay mineral composition. However, the assemblage consists of variably crystallized smectite that, at least in part, is of detrital origin and indicates chemical weathering under a humid climate. The main source area for the clays was in the Transantarctic Mountains. Minor amounts of illite and chlorite appear for the first time in Unit III (33.1-31 Ma) and suggest subordinate physical weathering. The sediments of Unit IV (31-30.5 Ma) have strongly variable smectite and illite concentrations indicating an alternation of chemical weathering periods and physical weathering periods. Unit V (30.5-24.2 Ma) shows a further shift towards physical weathering. Unit VI (24.2-18.5 Ma) indicates strong physical weathering under a cold climate with persistent and intense illite formation. Unit VII (18.5 Ma to present) documents an additional input of smectite derived from the McMurdo Volcanic Group in the south.     

Potassium exchange behaviour in Carribean volcanic ash soils under banana cultivation

Ca−K exchange isotherms of samples from carribean (Martinique island) volcanic soils differing in the weathering stage and in the nature of cation-exchange material were studied. Allophanic soils high in organic matter (Troporthents, Hydrandepts) exhibit a low selectivity for K-ions. Potassium is adsorbed specifically in the halloysitic soils (Humitropepts). A positive relationship exists between the affinity for K⁺ and the halloysite content. This relation is most likely due to the close association of 1∶1 hydrated phyllosilicates with 2∶1 smectitic clay minerals. A lower selectivity for K was observed in the kaolinitic soil materials (Dystropepts). Because parent rocks are very low in K, these exchange properties strongly influence their K status, through differences in susceptibility to K leaching losses and K availability to banana plants in intensive cropping systems.     

Transmission Electron Microscopic Observation of Mercury-Bearing Bacterial Clay Minerals in a Small-Scale Gold Mine in Tanzania

Mercury is a toxic substance that is widely distributed throughout the hydrosphere, biosphere, and lithosphere. Mine waste environments and mine waters support a wide diversity of microbial life. The microbial ecology of environments where mine waters are polluted with heavy metals is poorly understood. Here, we describe the features of bacteria in mercury-contaminated gold panning ponds in a small-scale gold mine (Geita) near Lake Victoria, Tanzania using energy filtering transmission electron microscopy (EF-TEM) and scanning transmission electron microscopy equipped with energy dispersive X-ray spectroscopy (STEM-EDX). Most bacteria in the panning pond showed thick exopolysaccharides (EPSs), and many clay minerals attached onto the surface of EPSs. The clay minerals and EPSs might act as protective layers for the bacteria against toxic materials. The clay minerals were composed of smectite, halloysite, and kaolinite associated with calcite and goethite. Scanning electron microscopy equipped with energy dispersive X-ray spectroscopy indicated that the bulk soil samples contained abundant Si, Al, K, Ca, and Fe with heavy metals such as Au, Ti, and Ag. The results indicate that Hg pollution from panning ponds is caused by not only volatilization of Hg from Au-Hg amalgams, but Hg is also released into the air as dust mixed with dry fine clays, suggesting high long-term environmental risks. Mercury-resistant bacteria associated with clay minerals may have a significant effect on the weathering processes of the ore during long-term bioremediation. The clay mineral complexes on the surface of bacterial cell walls are a stimulator for Hg-resistant bacterial growth in mud ponds contaminated with the Au-Hg materials.     

Silicates,Silicate Weathering,and Microbial Ecology

Mineralogy, microbial ecology, and mineral weathering in the subsurface are an intimately linked biogeochemical system. Although bacteria have been implicated indirectly in the accelerated weathering of minerals, it is not clear if this interaction is simply the coincidental result of microbial metabolism, or if it represents a specific strategy offering the colonizing bacteria a competitive ecological advantage. Our studies provide evidence that silicate weathering by bacteria is sometimes driven by the nutrient requirements of the microbial consortium, and therefore depends on the trace nutrient content of each aquifer mineral. This occurrence was observed in reducing groundwaters where carbon is abundant but phosphate is scarce; here, even resistant feldspars are weathered rapidly. This suggests that the progression of mineral weathering may be influenced by a mineral's nutritional potential, with microorganisms destroying only beneficial minerals. The rock record, therefore, may contain a remnant mineralogy that reflects early microbial destruction of biologically valuable minerals, leaving a residuum of "useless" minerals, where "value" depends on the organism, its metabolic needs, and the diagenetic environment. Conversely, the subsurface distribution of microorganisms may, in part, be controlled by the mineralogy and by the ability of an organism to take advantage of mineral-bound nutrients.     

Rock-colonizing plants: abundance of the endemic cactus <Emphasis Type="Italic">Mammillaria fraileana</Emphasis> related to rock type in the southern Sonoran Desert

Establishment, colonization, and permanence of plants affect biogenic and physical processes leading to development of soil. Rockiness, temperature, and humidity are accepted explanations to the influence and the presence of rock-dwelling plants, but the relationship between mineral and chemical composition of rocks with plant abundance is unknown in some regions. This study documents plant species growing on rocks, their capacity as rock colonizers measured by the Importance Index, and the relationships between the chemical composition of rocks and the abundance of the dominant plant. The community is composed of eight species and is dominated by the small cactus Mammillaria fraileana. Sites with low abundance of this species contain volcanic breccias, high amounts Ca, Fe, Mg, Ti, Al, and Mn as part of moderately weatherable minerals, such as plagioclase and pyroxene. Sites with higher abundance contain rhyodacite, rhyolite, and andesite rocks rich in more weatherable minerals, such as volcanic glass and minerals containing Si, K, and Na. K and Na were present in equal proportions only at the site with more plants. Since Na is toxic for most plants, an experiment was carried out to assess its effect on the survival of M. fraileana seedlings. Decreased survival occurred as the concentration of Na increased. Even in the treatment without Na, survival decreased slightly. In summary, presence and abundance of plants is related to the type of bedrock, their weathering characteristics, and proportion of elements. The interactions among elements, rather than the isolated effect of specific elements, could be the most reliable explanation for local variations in the abundance and dominance of Mammillaria fraileana in rocky habitat in the southern Sonoran Desert.     

Weathering and Disintegration of Rocks At Oakwood Lake,South Dakota (39Bk7)

Abstract

Some cobbles and pebbles, enclosed in eolian sediment with artifacts, were unweathered and others were very highly weathered. Because the artifacts were tentatively dated as 1 ,000 to 2,000 years old, natural weathering of some of the igneous and metamorphic rocks into masses of loose mineral grains was unlikely. Fragments of igneous boulders, found and broken apart at the site, were heated in the laboratory to 300° C or 500° C and cooled rapidly in water through six cycles. Those fragments heated to 500° C disintegrated into individual mineral grains if fractured mechanically. At the Oakwood Lake site, 66% of the rock arranged into circular patterns appeared to be fire cracked but only 56% of the randomly placed rock had this characteristic. Use of the cobbles and pebbles as “pot boiler” in cooking probably has hastened the natural weathering rate.     

Late Quaternary clay mineral record in Central Lake Baikal (Academician Ridge, Siberia)

We investigated the mineralogical composition of two cores recovered on the Academician Ridge (Central Lake Baikal, Siberia). Sedimentological features show that the cores are unaffected by turbidity currents. However, hemipelagic deposition is not continuous, but intermittently disturbed by syn- or post-sediment reworking (e.g., bioturbation, slumps, faulting). Such modes of deposition are consistent with the complex uplift history of the ridge. Bulk mineralogy suggests that terrigenous sediment supplies are constant through glacial/interglacial stages, and diluted by diatom-rich intervals related to warmer interglacial stages. The core stratigraphy is based on the correlation of the diatom zonation and opal abundance with the marine oxygen isotope reference curve SPECMAP. The ∼8-m cores partly recover the last four interglacial/glacial cycles, i.e., since oxygen isotope stage 8. We test the use of clay minerals as a proxy for paleoclimatic reconstruction. The clays are more weathered during the diatom-rich intervals in agreement with warmer climate conditions. However, the mean clay composition does not change significantly through glacial/interglacial stages. This observation implies that, in the Academician Ridge sediments, a simple smectite/illite ratio (S/I) does not alone provide a reliable indicator of climatic variation. It reflects the complex clay assemblages, especially the smectite group, delivered to Central Lake Baikal. Smectites include primarily illite-smectite mixed layers, made of a mixture of montmorillonite and beidellite. According to their behavior after cation saturation, the illite-smectite mixed layers are primarily transformed smectites, with some neoformed smectites intermittently observed. In addition, Al-smectites occur in minor proportions. We conclude that the S/I ratio has a climatic significance only if it evolves in parallel with the weathering stage of the clays and is confirmed by a change in the composition of the smectites.     

Short-term effects of biological and physical forces on aggregate formation in soils with different clay mineralogy

The mechanisms resulting in the binding of primary soil particles into stable aggregates vary with soil parent material, climate, vegetation, and management practices. In this study, we investigated short-term effects of: (i) nutrient addition (Hoagland's solution), (ii) organic carbon (OC) input (wheat residue), (iii) drying and wetting action, and (iv) root growth, with or without dry–wet cycles, on aggregate formation and stabilization in three soils differing in weathering status and clay mineralogy. These soils included a young, slightly weathered temperate soil dominated by 2:1 (illite and chlorite) clay minerals; a moderately weathered soil with mixed [2:1 (vermiculite) and 1:1 (kaolinite)] clay mineralogy and oxides; and a highly weathered tropical soil dominated by 1:1 (kaolinite) clay minerals and oxides. Air-dried soil was dry sieved through a 250 m sieve to break up all macroaggregates and 100 g-subsamples were brought to field capacity and incubated for 42 days. After 14 and 42 days, aggregate stability was measured on field moist and air-dried soil, to determine unstable and stable aggregation respectively. In control treatments (i.e., without nutrient or organic matter addition, without roots and at constant moisture), the formation of unstable and stable macroaggregates (> 250 m) increased in the order: 2:1 clay soil < mixed clay soil < 1:1 clay soil. After 42 days of incubation, nutrient addition significantly increased both unstable and stable macroaggregates in the 2:1 and 1:1 clay soils. In all soils, additional OC input increased both unstable and stable macroaggregate formation. The increase in macroaggregation with OC input was highest for the mixed clay soil and lowest for the 1:1 clay soil. In general, drying and wetting cycles had a positive effect on the formation of macroaggregates. Root growth caused a decrease in unstable macroaggregates in all soils. Larger amounts of macroaggregates were found in the mixed clay and oxides soil when plants were grown under 50% compared to 100% field capacity conditions. We concluded that soils dominated by variable charge clay minerals (1:1 clays and oxides) have higher potential to form stable aggregates when OC concentrations are low. With additional OC inputs, the greatest response in stable macroaggregate formation occurred in soils with mixed mineralogy, which is probably a result of different binding mechanisms occurring: i.e., electrostatic bindings between 2:1 clays, 1:1 clays and oxides (i.e. mineral-mineral bindings), in addition to OM functioning as a binding agent between 2:1 and 1:1 clays.     

Microbial influence on dolomite and authigenic clay mineralisation in dolocrete profiles of NW Australia

Dolomite (CaMg(CO₃)₂) precipitation is kinetically inhibited at surface temperatures and pressures. Experimental studies have demonstrated that microbial extracellular polymeric substances (EPS) as well as certain clay minerals may catalyse dolomite precipitation. However, the combined association of EPS with clay minerals and dolomite and their occurrence in the natural environment are not well documented. We investigated the mineral and textural associations within groundwater dolocrete profiles from arid northwest Australia. Microbial EPS is a site of nucleation for both dolomite and authigenic clay minerals in this Late Miocene to Pliocene dolocrete. Dolomite crystals are commonly encased in EPS alveolar structures, which have been mineralised by various clay minerals, including montmorillonite, trioctahedral smectite and palygorskite-sepiolite. Observations of microbial microstructures and their association with minerals resemble textures documented in various lacustrine and marine microbialites, indicating that similar mineralisation processes may have occurred to form these dolocretes. EPS may attract and bind cations that concentrate to form the initial particles for mineral nucleation. The dolomite developed as nanocrystals, likely via a disordered precursor, which coalesced to form larger micritic crystal aggregates and rhombic crystals. Spheroidal dolomite textures, commonly with hollow cores, are also present and may reflect the mineralisation of a biofilm surrounding coccoid bacterial cells. Dolomite formation within an Mg-clay matrix is also observed, more commonly within a shallow pedogenic horizon. The ability of the negatively charged surfaces of clay and EPS to bind and dewater Mg²⁺, as well as the slow diffusion of ions through a viscous clay or EPS matrix, may promote the incorporation of Mg²⁺ into the mineral and overcome the kinetic effects to allow disordered dolomite nucleation and its later growth. The results of this study show that the precipitation of clay and carbonate minerals in alkaline environments may be closely associated and can develop from the same initial amorphous Ca–Mg–Si-rich matrix within EPS. The abundance of EPS preserved within the profiles is evidence of past microbial activity. Local fluctuations in chemistry, such as small increases in alkalinity, associated with the degradation of EPS or microbial activity, were likely important for both clay and dolomite formation. Groundwater environments may be important and hitherto understudied settings for microbially influenced mineralisation and for low-temperature dolomite precipitation.