Diversity and abundance of “Pelagibacterales” (SAR11) in the Baltic Sea salinity gradient

The candidate order “Pelagibacterales” (SAR11) is one of the most abundant bacterial orders in ocean surface waters and, periodically, in freshwater lakes. The presence of several stable phylogenetic lineages comprising “Pelagibacterales” correlates with the physico-chemical parameters in aquatic environments. A previous amplicon sequencing study covering the bacterial community in the salinity gradient of the Baltic Sea suggested that pelagibacteral subclade SAR11-I was replaced by SAR11-IIIa in the mesohaline region of the Baltic Sea. In this current study, we investigated the cellular abundances of “Pelagibacterales” subclades along the Baltic Sea salinity gradient using catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). The results obtained with a newly designed probe, which exclusively detected SAR11-IIIa, were compared to CARD-FISH abundances of the marine SAR11-I/II subclade and the freshwater lineage SAR11-IIIb (LD12). The results showed that SAR11-IIIa was abundant in oligohaline–mesohaline conditions (salinities 2.7–13.3), with maximal abundances at a salinity of 7 (up to 35% of total Bacteria, quantified with a universal bacterial probe EUB). As expected, SAR11-I/II was abundant (27% of EUB) in the marine parts of the Baltic Sea, whereas counts of the freshwater lineage SAR11-IIIb were below the detection limit at all stations. The shift from SAR11-IIIa to SAR11-I/II was confirmed in the vertical salinity gradient in the deeper basins of the Baltic Sea. These findings were consistent with an overlapping but defined distribution of SAR11-I/II and SAR11-IIIa in the salinity gradient of the Baltic Sea and suggested the adaptation of SAR11-IIIa for growth and survival in mesohaline conditions.     

Distribution of denitrifying bacterial communities in the stratified water column and sediment–water interface in two freshwater lakes and the Baltic Sea

We have studied the distribution and community composition of denitrifying bacteria in the stratified water column and at the sediment–water interface in lakes Plußsee and Schöhsee, and a near-shore site in the Baltic Sea in Germany. Although environmental changes induced by the stratification of the water column in marine environments are known to affect specific populations of denitrifying bacteria, little information is available for stratified freshwater lakes and brackish water. The aim of the present study was to fill this gap and to demonstrate specific distribution patterns of denitrifying bacteria in specific aquatic habitats using two functional markers for the nitrite reductase (nirK and nirS genes) as a proxy for the communities. The leading question to be answered was whether communities containing the genes nirK and nirS have similar, identical, or different distribution patterns, and occupy the same or different ecological niches. The genes nirK and nirS were analyzed by PCR amplification with specific primers followed by terminal restriction fragment length polymorphism (T-RFLP) and by cloning and sequence analysis. Overall, nirS-denitrifiers were more diverse than nirK-denitrifiers. Denitrifying communities in sediments were clearly different from those in the water column in all aquatic systems, regardless of the gene analyzed. A differential distribution of denitrifying assemblages was observed for each particular site. In the Baltic Sea and Lake Plußsee, nirK-denitrifiers were more diverse throughout the water column, while nirS-denitrifiers were more diverse in the sediment. In Lake Schöhsee, nirS-denitrifiers showed high diversity across the whole water body. Habitat-specific clusters of nirS sequences were observed for the freshwater lakes, while nirK sequences from both freshwater lakes and the Baltic Sea were found in common phylogenetic clusters. These results demonstrated differences in the distribution of bacteria containing nirS and those containing nirK indicating that both types of denitrifiers apparently occupy different ecological niches.     

Could Seals Prevent Cod Recovery in the Baltic Sea?

Fish populations are increasingly affected by multiple human and natural impacts including exploitation, eutrophication, habitat alteration and climate change. As a result many collapsed populations may have to recover in ecosystems whose structure and functioning differ from those in which they were formerly productive and supported sustainable fisheries. Here we investigate how a cod (Gadus morhua) population in the Baltic Sea whose biomass was reduced due to a combination of high exploitation and deteriorating environmental conditions might recover and develop in the 21st century in an ecosystem that likely will change due to both the already started recovery of a cod predator, the grey seal Halichoerus grypus, and projected climate impacts. Simulation modelling, assuming increased seal predation, fishing levels consistent with management plan targets and stable salinity, shows that the cod population could reach high levels well above the long-term average. Scenarios with similar seal and fishing levels but with 15% lower salinity suggest that the Baltic will still be able to support a cod population which can sustain a fishery, but biomass and yields will be lower. At present knowledge of cod and seal interactions, seal predation was found to have much lower impact on cod recovery, compared to the effects of exploitation and salinity. These results suggest that dual management objectives (recovery of both seal and cod populations) are realistic but success in achieving these goals will also depend on how climate change affects cod recruitment.     

Scenario simulations of future salinity and ecological consequences in the Baltic Sea and adjacent North Sea areas–implications for environmental monitoring

Substantial ecological changes occurred in the 1970s in the Northern Baltic during a temporary period of low salinity (S). This period was preceded by an episodic increase in the rainfall over the Baltic Sea watershed area. Several climate models, both global and regional, project an increase in the runoff of the Northern latitudes due to proceeding climate change. The aim of this study is to model, firstly, the effects on Baltic Sea salinity of increased runoff due to projected global change and, secondly, the effects of salinity change on the distribution of marine species. The results suggest a critical shift in the S range 5–7, which is a threshold for both freshwater and marine species distributions and diversity. We discuss several topics emphasizing future monitoring, modelling, and fisheries research. Environmental monitoring and modelling are investigated because the developing alternative ecosystems do not necessarily show the same relations to environment quality factors as the retiring ones. An important corollary is that the observed and modelled S changes considered together with species’ ranges indicate what may appear under a future climate. Consequences could include a shift in distribution areas of marine benthic foundation species and some 40–50 other species, affiliated to these. This change would extend over hundreds of kilometres, in the Baltic Sea and the adjacent North Sea areas. Potential cascading effects, in coastal ecology, fish ecology and fisheries would be extensive, and point out the necessity to develop further the “ecosystem approach in the environmental monitoring”.     

Changes in species density along the soil pH gradient — evidence from German plant communities

The relationship between small-scale species richness and soil pH in plant communities was reviewed using 40 (mainly phytosociological) studies primarily from the northern parts of Germany. Four formations were distinguished (forest, grassland, mire and sand). To examine the above relationship, two approaches were applied: (a) regression analysis using linear and quadratic models, and (b) calculation of the mean pH of the five plots with the highest species density. Despite methodological problems (lack of single plot data in some studies, varying plot sizes, different ways of measuring pH) some general patterns could be identified. In forests, the regressions in most cases indicated a linear or curved increase in species density with increasing pH, whereas maximum species density was, except in one case, found at an intermediate pH of around 5. In contrast, in grasslands and mires, most studies showed hump-backed relationships between species density and soil acidity, and, accordingly, maximum species density was found at moderately high pH between 5 and 6. For sand vegetation, the few studies available revealed an increase in species density with increasing pH. The findings imply that the predominance of calciphilous speciesvs. acidophilous species in the Central European flora does not always translate into positive relationships between plant species density and pH on a local plot scale. The hump-backed species density-pH pattern may be explained by confounding effects of other environmental factors and of productivity, but also by the large overlap of species tolerances in the middle of the acidity gradient.     

A metabarcoding analysis of the wrackbed microbiome indicates a phylogeographic break along the North Sea–Baltic Sea transition zone

Sandy beaches are biogeochemical hotspots that bridge marine and terrestrial ecosystems via the transfer of organic matter, such as seaweed (termed wrack). A keystone of this unique ecosystem is the microbial community, which helps to degrade wrack and re-mineralize nutrients. However, little is known about this community. Here, we characterize the wrackbed microbiome as well as the microbiome of a primary consumer, the seaweed fly Coelopa frigida, and examine how they change along one of the most studied ecological gradients in the world, the transition from the marine North Sea to the brackish Baltic Sea. We found that polysaccharide degraders dominated both microbiomes, but there were still consistent differences between wrackbed and fly samples. Furthermore, we observed a shift in both microbial communities and functionality between the North and Baltic Sea driven by changes in the frequency of different groups of known polysaccharide degraders. We hypothesize that microbes were selected for their abilities to degrade different polysaccharides corresponding to a shift in polysaccharide content in the different seaweed communities. Our results reveal the complexities of both the wrackbed microbial community, with different groups specialized to different roles, and the cascading trophic consequences of shifts in the near shore algal community.     

What in earth? Analysing soil bacterial communities

Walk into any field and you will at once see dozens of plant and animal species. However, below your feet and largely unnoticed, lies a population of unseen millions. Can the introduction of powerful molecular biological techniques increase our understanding of how these hidden bacterial communities function in their natural environment?     

Do foliar fungal communities of Norway spruce shift along a tree species diversity gradient in mature European forests?

Foliar fungal species are diverse and colonize all plants, though whether forest tree species composition influences the distribution of these fungal communities remains unclear. Fungal communities include quiescent taxa and the functionally important and metabolically active taxa that respond to changes in the environment. To determine fungal community shifts along a tree species diversity gradient, needles of Norway spruce were sampled from trees from four mature European forests. We hypothesized that the fungal communities and specific fungal taxa would correlate with tree species diversity. Furthermore, the active fungal community, and not the total community, would shift along the tree diversity gradient. High-throughput sequencing showed significant differences in the fungal communities in the different forests, and in one forest, tree diversity effects were observed, though this was not a general phenomenon. Our study also suggests that studying the metabolically active community may not provide additional information about community composition or diversity.     

Variations of root traits in three Xizang grassland communities along a precipitation gradient北大核心CSCD

Aims Root functional traits and their variations mediate coexistence and adaptive strategy of plant species. Yet, strong environmental constraints may induce convergence of root traits among different plant species. To study the variations of root traits and clarify the diverse adaptive strategies across plant species, we sampled three alpine grasslands along a precipitation gradient in the Xizang Plateau. Methods In three grassland communities along a precipitation gradient: Nagqu, Baingoin and Nyima from east to west of Xizang Plateau, we collected 22 coexisting plant species and measured three key root traits: 1st-order root diameter, 1st-order lateral root length and root branch intensity. Important findings The main results showed that: (1) the root of plants in the alpine grassland was generally thin, and the interspecific variation was also small (22.76%); (2) the root diameter of 86% plant species was in the range from 0.073 mm to 0.094 mm. Compared with the thick-root species, thin-root species had a higher root branching intensity, but shorter lateral root length. In addition, at community-level, plants mainly increased root diameter and lateral root length, but reduced root branching intensity to adapt to the decreasing precipitation; while at species-level, the plant species exhibited diverse adaptive strategies along the precipitation gradient. © Chinese Journal of Plant Ecology.     

Rating species sensitivity throughout gradient systems – a consistent approach for the Baltic Sea

Evaluating the state of benthic communities has played an important role in water quality assessments. Indices incorporating species sensitivities, richness and densities are commonly applied. In Europe, the importance of benthic indices has increased in the last years with the implementation of the European Marine Strategy Framework Directive (MSFD) which at the same time demands the applicability of an index across regional scales. To date, environmental variability is rarely considered in benthic indices and most sensitivity rankings have the disadvantages of static values (i.e. the same value in all areas), expert judgement and a limited geographical range.This study presents species sensitivity values calculated along environmental gradients for the Baltic Sea. Sensitivities were calculated according to the procedure of the Benthic Quality Index (BQI). We created a matrix of subregions, classes of salinity, depth and gear to identify comparable subsets for data analysis. Altogether, 19 subsets were defined within the Baltic Sea basins. Sensitivity values were calculated for 329 species out of a total of 678 species that were recorded in this study. Sensitivity values of taxa vary between subsets as it was expected for different environmental conditions. Most sensitivity values can be assigned to species occurring in euhaline and polyhaline waters. Distribution of species with high and low sensitivity values differed along the salinity gradient. In euhaline waters more species with high sensitivity values occurred than species with low sensitivity values, while in mesohaline waters the ratio of high and low sensitivity values among species was almost equal. In oligohaline waters more species with lower sensitivity values were present.For the first time, sensitivity values were calculated for a large number of species using the same method for the entire Baltic Sea. This results in a Baltic-wide comprehensive set of sensitivity values based on a dataset across subregional borders, and divided along environmental gradients and gear type. The same principles can be applied to transient waters from rivers to coastal lagoons as well as to other environments with gradients of, e.g. hydrodynamic characteristics. Publicly available sensitivity values will increase transparency and support the improvement of state assessments under the MSFD.     

Dinophysis blooms in the deep euphotic zone of the Baltic Sea: do they grow in the dark?

In situ growth rates of the toxin-producing dinoflagellate Dinophysis norvegica collected in the central Baltic Sea were estimated during the summers of 1998 and 1999. Flow cytometric measurements of the DNA cell cycle of D. norvegica yielded specific growth rates (μ) ranging between 0.1 and 0.4 per day, with the highest growth rates in stratified populations situated at 15–20 m depth. Carbon uptake rates, measured using ¹⁴C incubations followed by single-cell isolation, at irradiances corresponding to depths of maximum cell abundance were sufficient to sustain growth rates of 0.1–0.2 per day. The reason for D. norvegica accumulation in the thermocline, commonly at 15–20 m depth, is thus enigmatic. Comparison of depth distributions of cells with nutrient profiles suggests that one reason could be to sequester nutrients. Measurements of single-cell nutrient status of D. norvegica, using nuclear microanalysis, revealed severe deficiency of both nitrogen and phosphorus as compared to the Redfield ratio.It is also possible that suitable prey or substrate for mixotrophic feeding is accumulating in the thermocline. The fraction of cells containing digestive vacuoles ranged from 2 to 22% in the studied populations. Infection by the parasitic dinoflagellate Amoebophrya sp. was observed in D. norvegica in all samples analysed. The frequency of infected cells ranged from 1 to 3% of the population as diel averages, ranging from 0.2 to 6% between individual samples. No temporal trends in infection frequency were detected. Estimated loss rates based on observed infection frequencies were 0.5–2% of the D. norvegica population daily, suggesting that these parasites were not a major loss factor for D. norvegica during the periods of study.     

Long-term changes in the phytobenthos of the southern Åland Islands,northern Baltic Sea

Marine macrophytes and -algae have undergone major changes in abundance and species composition over the last decades, primarily due to eutrophication. However, comparable studies conducted in the mid 20th century are rare, but potentially valuable for enabling insight into changes in the benthic communities from the early onset of the eutrophication of the Baltic Sea. In the present study, the submerged phytobenthic community in the exposed southern archipelago of the Åland Islands was examined in 2018 and compared with surveys conducted in 1956 and 1993, respectively. The aim was to analyze long-term changes in the phytobenthic community in relation to the general large-scale anthropogenic drivers since the 1950s. Between 1956 and 1993, a decrease in the total number of species/taxa, an increase of filamentous algae coverage and a decrease in the depth range of Fucus vesiculosus was observed. These changes in the phytobenthic community continued between 1993 and 2018, suggesting no changes in the previously described negative trends. Between 1956 and 2018, a general shift in the distribution of phytobenthic functional groups, (grouped according to morphology and type of algae; green, brown and red) occurred, with increased coverage of filamentous brown and green algae, and decline in red algae coverage. The depth range of F. vesiculosus also decreased by >50% between 1956 and 2018. The results support findings that the eutrophication of the northern Baltic Sea is still at a high level, which slows down or prevents the recovery of offshore phytobenthic communities, despite the progress seen in other areas. Thus, the likely main drivers behind the changes are the direct and indirect effects of eutrophication in combination with warmer water, i.e. an effect of climate change.     

Analysis of bacterial core communities in the central Baltic by comparative RNA–DNA-based fingerprinting provides links to structure–function relationships

Understanding structure–function links of microbial communities is a central theme of microbial ecology since its beginning. To this end, we studied the spatial variability of the bacterioplankton community structure and composition across the central Baltic Sea at four stations, which were up to 450 km apart and at a depth profile representative for the central part (Gotland Deep, 235 m). Bacterial community structure was followed by 16S ribosomal RNA (rRNA)- and 16S rRNA gene-based fingerprints using single-strand conformation polymorphism (SSCP) electrophoresis. Species composition was determined by sequence analysis of SSCP bands. High similarities of the bacterioplankton communities across several hundred kilometers were observed in the surface water using RNA- and DNA-based fingerprints. In these surface communities, the RNA- and DNA-based fingerprints resulted in very different pattern, presumably indicating large difference between the active members of the community as represented by RNA-based fingerprints and the present members represented by the DNA-based fingerprints. This large discrepancy changed gradually over depth, resulting in highly similar RNA- and DNA-based fingerprints in the anoxic part of the water column below 130 m depth. A conceivable mechanism explaining this high similarity could be the reduced oxidative stress in the anoxic zone. The stable communities on the surface and in the anoxic zone indicate the strong influence of the hydrography on the bacterioplankton community structure. Comparative analysis of RNA- and DNA-based community structure provided criteria for the identification of the core community, its key members and their links to biogeochemical functions.     

Plant ecological traits highlight the effects of landscape on riparian plant communities along an urban–rural gradient

Urban landscapes are characterized by an urban matrix often unfavorable for biodiversity, interspersed with remnant corridors such as riparian areas. Those are increasingly threatened by urban expansion and land use change worldwide. We investigated the effect of the two components, matrix versus corridor, by comparing the riparian plant diversity and the community-level ecological traits along an urbanization gradient. Species distribution was surveyed at a local-scale along an urban riparian corridor in Strasbourg, eastern France. Ninety plots were sampled along an urbanization gradient. Several plant metrics were measured using both plant richness (R) and mean ecological trait values of species weighted by their abundance (CWM). The surroundings of each plot were first described by selecting representative variables of matrix and corridor. Secondly, the distribution of plant species according to a given i ecological trait was analyzed in relation with different levels of urbanization. Using mixed effects models, we verified whether matrix or corridor variables best explain the distribution of traits. Three levels of urbanization were detected, termed urban, suburban and peri-urban, based on landscape composition. Neither the peri-urban nor the suburban level affected plant metrics. At the urban level, and whatever indicator value was considered, the CWMi metrics clearly decreased, whereas species richness Ri increased. The upstream distance to the nearest natural area and tree cover were the most influential variables on CWMi metrics, whereas Ri metrics were mainly driven by built component and landscape heterogeneity. Matrix variables were more important in explaining Ri metrics while corridor features affected CWMi metrics. These results highlight the preponderance of the corridor effect on plant ecological types and the importance of the matrix on the selection and/or the implantation of novel species. Thus, the urbanization gradient may operate simultaneously on the abundance of local species and impose the recruitment of new co-existing species. This study suggests that ecological type responds to the urbanization gradient and may be an alternative tool to understand plant distribution rather than plant diversity.     

Vegetative aquaculture of Fucus in the Baltic Sea—obtaining low-fertility biomass from attached or unattached populations?

Journal of Applied Phycology - An experimental farm has been installed in the Kiel Fjord, western Baltic Sea, aiming at the development of a sustainable production process for Fucus species (Fucus...     

What is the effect of climate change on marine fish biodiversity in an area of low connectivity,the Baltic Sea?

Aim Climate change could result in an increase in species richness because large‐scale biogeography suggests that more species could be gained from equatorial regions than may be lost pole‐ward. However, the colonization of newly available habitat may lag behind the rate dictated by climatic warming if there exists of a lack of connectivity between ‘donor’ and receiving areas. The objective of this study was to compare how regional warming affected the biodiversity of marine fish in areas that differed in their connectivity in the Baltic Sea. Location North‐east Atlantic, Kattegat and Baltic Sea. Methods The total species richness and the mean species richness from scientific surveys were related to changes in temperature and salinity. Changes in the extent of the distribution of individual fish species were related to the latitudinal distribution, salinity tolerance, maximum body size and exploitation status to assess to what extent climate change and fishing impacts could explain changes in species richness in the Baltic. Results Rising temperatures in the well‐connected Kattegat correlated to an increase in the species richness of fish, due to an increase in low‐latitude species. Unexpectedly, species richness in the poorly connected Baltic Sea also increased. However, the increase seems to be related to higher salinity rather than temperature and there was no influx of low‐latitude species. Main conclusions These results do not support the hypothesis that low‐connectivity areas are less likely to see increases in species richness in response to warming. This indicates that the effect of climate change on biodiversity may be more difficult to predict in areas of low connectivity than in well‐connected areas.     

Peculiarities of the state of phytoplankton in the Baltic Sea’s Vistula Lagoon at the turn of 21st century

In 1989–2005 the qualitative composition and seasonal and inter-annual dynamics of the total biomass of phytoplankton, chlorophyll a content, hydrological, and hydrochemical parameters were studied in the Russian zone of the Vistula Lagoon in the Baltic Sea. The results of these observations were compared to the data obtained in the 1950s and 1970s. The structural reorganization of phytoplankton was revealed, testifying to the negative changes in the ecosystem under conditions of anthropogenic pollution and eutrophication, climate warming, and increasing salinity.     

Soil Collembola communities along a steep microclimatic gradient in the collapse doline of the Silická ľadnica Cave, Slovak Karst (Slovakia)

In spring 2005 we investigated the collembolan communities in the 50-m-deep collapse doline of the perennial ice cave Silická ?adnica in the Slovak Karst (Slovakia). Samples were taken at seven sites along a 117.5-m-long transect on the slope from the ice-bearing cave mouth at the bottom of the doline up to the terrain surface at 500 m above sea level (a.s.l.). The temperature above the soil surface (+0.6 to +13.6°C) positively correlated with altitude. Species numbers (ranging from 20–32) and diversity indices were highest at sites in the middle of the slope with rendzina and well developed organic profiles. A Kruskal-Wallis ANOVA revealed significant differences in abundance between the sites. Mean abundance near the permafrost zone at the bottom of the doline was significantly higher than at the sites further upslope. The abundances of some eurytopic and forest species were significantly correlated with soil temperature. Cluster analysis and the IndVal method indicated differences in the structure of Collembolan communities along the transect. The community at the coldest site had the lowest species richness and the highest mean abundance of individuals. A total of ten montane species were recorded, with a lower number near the permafrost zone compared to the micro-climatically more favourable middle section of the gradient.