Effect of soil cultivation and anaerobiosis on cavity spot of carrots

Cultivating between rows and narrow beds of carrots reduced the severity of cavity spot in one year and reduced the incidence and severity in single rows in a second year on land where the disorder was endemic. Growing carrots on ridges initially reduced symptoms more than inter-row cultivation. Soluble carbohydrates leached from carrot roots in vitro and the quantities increased when anaerobic conditions were imposed. Untreated and cell-free extracts of soil suspensions amended with 1% glucose and incubated anaerobically applied to carrots in the laboratory caused the outer layers of the secondary phloem to collapse resembling a cavity spot lesion. Unamended and fresh soil solutions had no effect.     

Pythium species associated with cavity spot on carrots in Norway

Carrot roots with cavity spot lesions from eight different counties in Norway were sampled and Pythium species were isolated on selective medium. Pythium spp. were characterised morphologically and by species-specific PCR. Laboratory experiments with inoculations of carrot roots were performed. A total of 130 isolates out of 230 Pythium -like isolates tested with PCR were identified as pathogenic species of Pythium. These were P. intermedium (29%), P. sulcatum (23%), P. sylvaticum (16%), P. violae (15%) and a possible new Pythium species designated P . ' vipa ' (18%). There were some differences between geographical regions and ages of cavities regarding the frequency of the different species isolated. When rating sunken lesions in the laboratory inoculation experiments, P. ' vipa ' was the most aggressive and P. violae the least aggressive species. P. intermedium and P. ' vipa ' caused more discolouration of the infected carrot tissue than the other species. The importance of the different Pythium spp. as agents of cavity spot in Norway is discussed.     

Recovery of citrus surface roots following prolonged exposure to dry soil

The effects of prolonged exposure to dry surface soil on the capacity of roots to take up water and phosphorus were examined in mycorrhizal sour orange (Citrus aurantium L.) seedlings grown in pots with upper and lower portions separated hydraulically. In the first experiment, upper portions of the pots were either irrigated every 2-3 d, droughted for 14 d, droughted for 43 d, or droughted for 42 d followed by 8 d re-irrigation. Lower portions of the pots were irrigated and fertilized every 2-3 d. Phosphorus uptake capacity was estimated in excised roots using ³²P in aerated 50, 750, and 1500 M P solutions. Exposure to dry soil had no appreciable effect on P uptake capacity. In the second experiment, the ability of intact root to acquire water and P in the 8 d following rewatering after roots were exposed to localized drought for 14 and 43 d was examined. Roots were observed non-destructively using small transparent tubes (2 cm diameter) and a rigid borescope. Soil water depletion was monitored using time-domain reflectrometry. Phosphorus (³²P) was added at various depths in the soil in the upper compartment and uptake was assessed by non-destructively counting beta particle emissions from leaves using a scintillation probe. Similar to the first experiment, localized drought had no effect on P uptake and soil water depletion in citrus roots compared to continuously irrigated plants. Water and P uptake in the first few days apparently occurred from existing roots because of delayed production of new roots in the droughted treatment. Thus, citrus roots exposed to extended periods of dry soil apparently maintain or very quickly recover P and water uptake capacity. This behaviour is consistent with an overall rooting strategy where essentially no surface roots are shed following prolonged exposure to dry soil.     

Cavity spot of carrot (Daucus carota)

Cavity spot disease of carrot (Daucus carota) has been one of the intractable problems for both growers and scientists. Carrots are rejected at grading with one or two visible lesions, and when disease incidence passes a relatively low threshold it becomes uneconomic to harvest crops. For the scientist, there has been considerable pressure to produce both information on the cause of the disease and a cure. Many putative causes have been advanced over the years, but these were almost always contradicted by subsequent work. The first solid indication of involvement of a pathogen was when three different fungicides with activity against Oomycete fungi all reduced disease. Very quickly the causal agents Pythium violae and Pythium sulcatum were isolated from cavity spot lesions and Koch's postulates satisfied. The species are not typical of the more common pythia, having slow growth at normal temperatures, which means that in the context of isolation work, plates may be overgrown by other species before they are seen. Metalaxyl fungicide was identified as the most effective in controlling cavity spot caused by P. violae, but P. sulcatum is naturally tolerant of the fungicide. Recently, metalaxyl has been shown to be subject to enhanced microbial degradation. This phenomenon has been associated with failure to control cavity spot. No other fungicide has been shown to be consistently effective in the field, and none has been registered for disease control. For the future, this means that control of cavity spot can not be based solely on fungicidal control. Other, complementary strategies are necessary for reducing disease. Calcium carbonate is known to have significant effects on cavity spot, probably by inducing a soil microflora inhibitory to filamentous fungi. Management of agronomic aspects such as irrigation, soil cultivation and the length of time for which crops are grown may all be used, while carrot cultivars with some field resistance may be beneficial. However, one of the most significant factors is disease avoidance by not selecting fields with high inoculum levels. One serology‐based risk assessment test has been produced and commercialised, and molecular probes which could be the basis of more sensitive tests are available for both pathogens. The potential for disease reduction via a management strategy combining several key components is discussed.     

Microbiological differences between limed and unlimed soils and their relationship with cavity spot disease of carrots (Daucus carota L.) caused by Pythium coloratum in Western Australia

Application of lime (4000 kg ha^-1) to a soil used for commercial carrot production (pH 6.9) significantly (p<0.05) reduced the incidence of cavity spot disease of carrots compared to unlimed soil (pH 5.1). It significantly (p<0.01) increased soil microbial activity as measured by the hydrolysis of fluorescein diacetate and arginine ammonification. The application of lime resulted in a significant (p<0.01) increase in the total numbers of colony forming units (efu) of aerobic bacteria, fluorescent pseudomonads, Gram negative bacteria, actinomycetes and a significant (p<0.01) decrease in the cfu of filamentous fungi and yeasts compared to unlimed soil. Liming also increased the cfu of non-streptomycete actinomycetes rarely reported in similar studies. These non-streptomycete actinomycetes were estimated and isolated using polyvalent Streptomyces phages and the dry heat technique to reduce the dominance of streptomycetes on isolation plates. The non-streptomycete actinomycetes isolated included species of Actinoplanes, Micromonospora, Streptoverticillium, Nocardia, Rhodococcus, Microbispora, Actinomadura, Dactylosporangium and Streptosporangium. The numbers of actinomycetes antagonistic to Pythium coloratum, a causal agent of cavity spot disease of carrots increased in soil amended with lime. Application of lime also reduced the isolation frequency of P. coloratum from asymptomatic carrot roots grown in soil artificially infested with the pathogen, 3, 4 and 5 weeks after sowing.     

Drought resistance and root morphology in sorghum

Two 2 m³ plots of soil were prepared to different water contents and each isolated from surrounding soil by impermeable plastic material. Nine sorghum varieties were germinated in the plots and allowed to grow without further watering. Time-to-wilt after emergence was measured, and several parameters relating to water flow of the seedling and nodal roots were determined. There was a good positive correlation between both seminal root and nodal root relative conductvity and time-to-wilt. In a second experiment, plants were germinated and grown in pots, and after two weeks of growth without further watering were inspected for survival in the unwilted state. The per cent survival was calculated. There was a negative correlation of seminal root relative conductivity with per cent survival, and a high negative correlation of the number of seminal roots with per cent survival. It is concluded that high relative conductivity indicates drought resistance if the plants are growing with less restricted roots as in open soil, while if the plants are grown in pots the reverse is the case. Experiments linking root conductivity with survival conducted in pots are poor predictors of performance in less restricted rooting conditions.     

Biochemical characterisation of Pythium spp. involved in cavity spot of carrots in France

The pathogenicity and growth rate in vivo were assessed on 27 isolates of Pythium spp. recovered from cavity spot lesions on carrots grown in various parts of northwest France. Polyacrylamide gel electrophoresis of isoesterases was used to identify the Pythium spp. involved. Slow-growing isolates were more aggressive than fast-growing ones when inoculated on carrot tap roots. Isoesterase patterns identified the slow-growing isolates as P. violae and P. sulcatum; P. ultimum and P. intermedium were identified among the less aggressive fast-growing isolate group, in which some isolates were also classed as P. sylvaticum or P. irregulare, which have similar electrophoretic profiles. The incidence of Pythium spp. associated with the disease in France is discussed in regard to cavity spot in other countries.     

Importance of internal hydraulic redistribution for prolonging the lifespan of roots in dry soil

Redistribution of water within plants could mitigate drought stress of roots in zones of low soil moisture. Plant internal redistribution of water from regions of high soil moisture to roots in dry soil occurs during periods of low evaporative demand. Using minirhizotrons, we observed similar lifespans of roots in wet and dry soil for the grapevine 'Merlot' (Vitis vinifera) on the rootstock 101-14 Millardet de Gramanet (Vitis riparia x Vitis rupestris) in a Napa County, California vineyard. We hypothesized that hydraulic redistribution would prevent an appreciable reduction in root water potential and would contribute to prolonged root survivorship in dry soil zones. In a greenhouse study that tested this hypothesis, grapevine root systems were divided using split pots and were grown for 6 months. With thermocouple psychrometers, we measured water potentials of roots of the same plant in both wet and dry soil under three treatments: control (C), 24 h light + supplemental water (LW) and 24 h light only (L). Similar to the field results, roots in the dry side of split pots had similar survivorship as roots in the wet side of the split pots (P = 0.136) in the C treatment. In contrast, reduced root survivorship was directly associated with plants in which hydraulic redistribution was experimentally reduced by 24 h light. Dry-side roots of plants in the LW treatment lived half as long as the roots in the wet soil despite being provided with supplemental water (P < 0.0004). Additionally, pre-dawn water potentials of roots in dry soil under 24 h of illumination (L and LW) exhibited values nearly twice as negative as those of C plants (P = 0.034). Estimates of root membrane integrity using electrolyte leakage were consistent with patterns of root survivorship. Plants in which nocturnal hydraulic redistribution was reduced exhibited more than twice the amount of electrolyte leakage in dry roots compared to those in wet soil of the same plant. Our study demonstrates that besides a number of ecological advantages to protecting tissues against desiccation, internal hydraulic redistribution of water is a mechanism consistent with extended root survivorship in dry soils.     

Detection of Pythium violae and Pythium sulcatum in carrots with cavity spot using competition ELISA

Conventional methods indicated that Pythium violae was most commonly isolated from carrot cavity spot samples from 14 UK sites. For one site the most frequently isolated species was Pythium sulcatum. Results of similar isolation work were compared with the assay of cavity spot lesions using polyclonal antibodies, raised to P. violae or P. sulcatum, in competition ELISA. Where lesions were artificially induced the test confirmed which pathogen was causal. With cavities developed on the field-grown carrots P. violae again predominated and the ELISA confirmed this. In one sample P. sulcatum was also isolated from a small number of lesions and was not detected in ELISA. The competition ELISA did not indicate presence of either Pythium in a range of non-cavity spot lesions from which attempts at isolation were negative.     

Influence of soil water deficits on root growth of cotton seedlings

Summary Cotton (Gossypium hirsutum L. cv. H14) seedlings were raised in soil of differing soil water content in specially designed pots in which the roots had access to freely available water and nutrients located 2.5 cm below the base of the soil core. The time for root emergence from the soil core and the rate of root growth were measured daily from sowing to harvest. The root and shoot dry weight and leaf water potential were measured at the final harvest 16 days after sowing. As soil water content decreased, the root emerged from the soil earlier and the initial rate of root elongation was faster. In spite of the availability of freely available water, the plants in the soil at low water contents had significantly lower leaf water potentials than those in soil at high water contents. The root: shoot ratio increased as the soil water content decreased. This arose from an absolute increase in root weight, with shoot weight not being significantly affected.     

Use of a microtensiometer technique to study hydraulic lift in a sandy soil planted with pearl millet (Pennisetum americanum [L.] Leeke)

A pot experiment was carried out with pearl millet (Pennisetum americanum [L.] Leeke) growing in a sandy soil in which the upper (topsoil) and lower (subsoil) parts of the pots were separated by a perlite layer to prevent capillary water movement. Using microtensiometers a study was made to establish whether it was possible to measure hydraulic lift by which the upper part of the soil was rewetted when water was supplied exclusively to the lower part of the soil.Hydraulic lift occurred during the first seven days of the period of measurement, with a maximum water release to the soil of 2.7 Vol. % during one night (equivalent to 10.8 mL water in the top 10 cm of the soil profile). This magnitude was obtained at very high root length densities, so that water release from the roots would be expected to be much smaller under field conditions.Hydraulic lift ceased when the soil matric potential in the topsoil dropped below-10 kPa at the end of the light period and could not be re-established, neither by extending the dark period, nor after rewatering the topsoil. The disappearance of hydraulic lift could be explained in part through osmotic adaptation of plant roots and, thus prevention of water release from the roots in the topsoil. It is concluded that hydraulic lift may affect nutrient uptake from drying topsoil by extending the time period favourable for uptake from the topsoil.     

The resistance of two clones of perennial ryegrass and their progeny to ryegrass mosaic virus from different parts of Britain

Cavity spot is initiated anywhere on the carrot storage organ, when cells of the outermost layers of the secondary phloem collapse progressively, leading eventually to rupture of the periderm. A wound periderm forms around the lesion and suberin and lignin are deposited in the cell walls. Polyphenols accumulate in tissue around the lesion. Neither Ca or K concentrations in the soil or their ratios were related to cavity spot in surveys of crops in E. Scotland. Of the many characteristics recorded, only soil bulk density was related to the incidence of the disorder. No consistent responses to high concentrations of Ca or K were obtained in field and pot experiments. A response to Ca as gypsum was possibly due to its effect on soil structure.     

Root-colonization ability of antagonistic Streptomyces griseoviridis

Root-colonization ability of Streptomyces griseoviridis was tested on turnip rape (Brassica rapa subsp. oleifera) and carrot (Daucus carota) by the plate test and the sand-tube method. In the plate test, colonized root length of total root length was highly significantly greater for turnip rape roots (72%) from those for carrot roots (1%). In the sand-tube method, root-colonization ability was examined in nonsterile soil, and no water was added after sowing. Seeds were treated with spores of S. griseoviridis or the biofungicide Mycostop. Roots were cut into 2-cm segments, and the root segments and the rhizosphere soil were studied separately. Root-colonization frequencies and population densities of the microbe in the rhizosphere soil indicated that S. griseoviridis successfully colonized turnip rape but weakly colonized carrot. Root-colonization of turnip rape is accounted for as proliferation of S. griseoviridis in the rhizosphere of turnip rape seedlings and is not due to the movement of microbe through the rhizosphere by water infiltration.     

Effect of lime,phosphorus and mycorrhizal fungi on growth,nodulation and nitrogen fixation by white clover (Trifolium repens) grown in UK hill soils

Summary The responses of white clover (cv NZ Grasslands Huia grown in four UK hill soil types) to additions of lime and P, to inoculation with Rhizobium and mycorrhizal fungi, and to differences in soil water status were assessed in pot and field experiments. With a deep peat soil in pots, shoot production, nodulation and N fixation by clover were increased by 160, 130 and 85% respectively following inoculation with mycorrhiza, but in the field, despite a doubling of root infection, there was no response in growth. On a brown earth soil in the field inoculation with one endophyte (Glomus mosseae L1) out of four tested depressed production of white clover shoots by 42% but enhanced that of leeks (Allium porrum) by 50%; the others were without effect. With dry peaty podzol and brown earth soils in pots, clover shoot production was highest with added P when a water holding capacity of 80% was maintained, but roots from the latter had only 2.6 compared to 68 nodules per plant from the former. Further work is required to explain poor nodulation in the brown earth soils.     

Cavity spot of carrots - observations on a commercial crop

A single field of commercially-grown carrots was sampled in September at 16 points for cavity spot incidence. Carrot tops, root core and peel were analysed for N, P, K, Ca and Mg, and soils were analysed for organic C, total N, available P, K, Ca, Mg and Na, pH, conductivity and chloride. The incidence of the disorder varied from 0–96% within a small area of field, thus tending to rule out explanations for cavity spot based entirely on weather, genotype etc. Several types of lesion were recorded in addition to ‘typical’ cavity spot, and their incidence was found to be mutually correlated. Most of these (including splitting) were positively correlated with cavity spot, and tended to be positively related to concentrations of macroelements in the carrot peel (especially N and Ca): however, ‘scabs’ were very strikingly dissociated from cavities (both on a plot and individual root basis). This dissociation appeared to be connected with soil pH, in that scabs were most common above pH 6-5, whereas cavities were most frequent below this pH.     

Methods of investigating populations of the take-all fungus (Ophiobolus graminis) in soil

Attempts to isolate Ophiobolus graminis directly from infested soils failed, so host-infection techniques were used to study soil-borne populations of the fungus. Extracting organic debris from soils and grading it by wet sieving through standard meshes concentrated the fungus. Fractions were tested for infectivity either as layers in pots of sand or by packing into short lengths of polyvinyl chloride tubing, through which wheat seedlings were grown. Coarse debris (retained by 420 μ aperture sieves) was most infectious and usually caused lesions within 3 weeks; whole soil and especially fine debris (< 420 μ) caused fewer and less severe infections, which often became apparent only after 3 weeks. Slight infectivity of the sediment fractions was attributed to imperfect separation of debris. Soil sampled in crop or stubble rows caused more infections than soil from between rows. Usually seedling infection was made manifest by root lesions and runner hyphae, but these symptoms were not always plain or conclusive. Many seedling roots that rotted when kept moist and in the light produced perithecia within 6 weeks. Although perithecia formed on some roots where neither lesions nor hyphae were found, they did not form on all diseased roots. More needs to be known about the factors influencing perithecial formation before it can be used as a reliable confirmatory test.     

Evaluation of Dry Ice as a Potential Cryonematicide for Meloidogyne incognita in Soil

Solid CO₂ (dry ice) was added to pots containing soil that was infested either with eggs of the root-knot nematode, Meloidogyne incognita, or with tomato (Lycopersicon esculentum ''Rutgers'') root fragments that were infected with various stages of the nematode. Two hours after dry ice was added, thermocouples in the soil recorded temperatures ranging from -15 °C to -59 °C. One day after treatment with the dry ice, the temperature of the soil was allowed to equilibrate with that of the greenhouse, and susceptible tomato seedlings were planted in pots containing infested soil treated or untreated (controls) with dry ice. After 5 weeks, roots were removed from the pots and nematode eggs were extracted and counted. Plants grown in soil infested with eggs and receiving dry ice treatment had less than 1% of the eggs found in the controls; plants from soil infested with root fragments and receiving dry ice treatment had less than 4% of the eggs found in controls. Dry ice used to lower soil temperature may have potential as a cryonematicide.     

Root-to-shoot signalling when soil moisture is heterogeneous: increasing the proportion of root biomass in drying soil inhibits leaf growth and increases leaf abscisic acid concentration

To determine whether root-to-shoot signalling of soil moisture heterogeneity depended on root distribution, wild-type (WT) and abscisic acid (ABA)-deficient (Az34) barley (Hordeum vulgare) plants were grown in split pots into which different numbers of seminal roots were inserted. After establishment, all plants received the same irrigation volumes, with one pot watered (w) and the other allowed to dry the soil (d), imposing three treatments (1 d: 3 w, 2 d: 2 w, 3 d: 1 w) that differed in the number of seminal roots exposed to drying soil. Root distribution did not affect leaf water relations and had no sustained effect on plant evapotranspiration (ET). In both genotypes, leaf elongation was less and leaf ABA concentrations were higher in plants with more roots in drying soil, with leaf ABA concentrations and water potentials 30% and 0.2 MPa higher, respectively, in WT plants. Whole-pot soil drying increased xylem ABA concentrations, but maximum values obtained when leaf growth had virtually ceased (100 nm in Az34, 330 nm in WT) had minimal effects (<40% leaf growth inhibition) when xylem supplied to detached shoots. Although ABA may not regulate leaf growth in vivo, genetic variation in foliar ABA concentration in the field may indicate different root distributions between upper (drier) and lower (wetter) soil layers.     

Biological Control of Carrot Black Rot

Diseased carrot seeds were treated with selected micro-organisms isolated from soils, carrot seeds and tap roots. The effects of those antagonists on the control of Alternaria radicina were evaluated by growing-on tests on water agar, filter paper, vermiculite and in a potting medium (BVB no. 4). The germination percentage, emergence percentage and the disease severity of those carrot seeds treated with Burkholderia (Pseudomonas) cepacia no.229 were significantly (P=0.05) differed from the non-treated seeds and the seed treated with other antagonists. The effects of B. cepacia no.229 in promoting seed emergence and controlling disease were as good as those seeds treated with iprodione (100 p.p.m.). Black rot lesions on carrot tap roots were significantly reduced (P=0.05) in size when roots were treated with B. cepacia no 229 or Bacillus amyloliquefaciens no. 224 compared to the nontreated roots. Also, B. cepacia no. 229 significantly (P=0.05) reduced black rot on the foliage of carrot compared to check.     

Relationships between root growth of Zinnia hybrid “profusion orange” flowers and phytoremediation of oil-contaminated soil

Relationships exist between plant root growth and the phytoremediation of oil-contaminated soils. In a previous study, we demonstrated that zinnia flowers are well suited for the remediation of oil-contaminated soil. In this study, our goal was to quantify the relationship between zinnia root growth and purification of oil-contaminated soils. Three treatments were used: (1) cultivation of zinnia in oil-contaminated soil (contaminated pots), (2) cultivation in non-contaminated soil (non-contaminated pots), and (3) contaminated soil with no cultivation and only irrigation (irrigated pots). Growth of the Zinnia plants, including their roots, was significantly reduced in the contaminated pots compared with the noncontaminated pots. The soil dehydrogenase activity increased between 45 and 90?days after planting in all parts of the contaminated pots, especially the upper parts. The soil total petroleum hydrocarbon (TPH) concentrations in the contaminated pots decreased throughout the study period. Interestingly, the soil dehydrogenase activity increased, and the soil TPH concentration decreased even in lower parts of the pots where there was very little root growth. Therefore, the cultivation of plants can have a remediative effect on oil-contaminated soil even below the depth reached by the plant roots.