Prevalence of mastoid infection in prehistoric Arizona Indians

In view of the reported high prevalence of otitis media and mastoiditis in the present-day Indian inhabitants of Arizona, when an opportunity arose to examine the skulls of prehistoric Indians in the collection of the Arizona State Museum, University of Arizona, Tucson, Arizona, it was thought that determining the prevalence of mastoiditis in them might be helpful in the treatment and prevention of mastoid infections in the present-day population. Our findings are compared with those of two other studies of mastoiditis in prehistoric Indians in another area of the United States.     

Indian and Nation in Revolutionary Mexico

Indian and Nation in Revolutionary Mexico . Alexander S. Dawson. Tucson: University of Arizona Press, 2004. 240 pp.     

American Indian Languages

American Indian Languages: Cultural and Social Contexts. Shirley Silver and Wick R. Miller. Tucson: University of Arizona Press, 1997. xix. 433 pp.
American Indian Languages: The Historical Linguistics of Native America. Lyle Campbell. New York: Oxford University Press, 1997. xiv. 512 pp.     

Peopling of South Asia: investigating the caste-tribe continuum in India

In recent years, mtDNA and Y chromosome studies involving human populations from South Asia and the rest of the world have revealed new insights about the peopling of the world by anatomically modern humans during the late Pleistocene, some 40,000-60,000 years ago, over the southern coastal route from Africa. Molecular studies and archaeological record are both largely consistent with autochthonous differentiation of the genetic structure of the caste and tribal populations in South Asia. High level of endogamy created by numerous social boundaries within and between castes and tribes, along with the influence of several evolutionary forces such as genetic drift, fragmentation and long-term isolation, has kept the Indian populations diverse and distant from each other as well as from other continental populations. This review attempts to summarize recent genetic studies on Indian caste and tribal populations with the focus on the information embedded in the socially defined structure of Indian populations.     

Responses of native and migrant desert residents to arid heat

Four groups of Sonoran Desert residents were compared in three studies of heat tolerance. In the first two studies the task involved walking in arid heat at a moderate rate (5 km/hour) for two hours per day over a period of seven consecutive days. The first study compared seven Yaqui Indians with ten Mestizos, all lifelong residents of the same neighborhood in Hermosillo, Sonora. The groups showed no significant differences in physiological responses. The second study compared five Papago Indian students with five White students from Tucson, Arizona. The Papago showed significantly lower sweat rates and significantly lower rectal temperatures. None of the groups showed sequential changes which could be called acclimatization. The lower sweat rate of the Papago is partially the result of their smaller size, but their lower rectal temperatures may represent a more effective heat dissipating mechanism. The third study compared naturally acclimatized Yaquis and Mestizos in hot, humid conditions established by other investigators. These well acclimatized subjects responded in a manner intermediate between the unacclimatized and artificially acclimatized Caucasians reported in the literature. Thus desert acclimatization does not confer maximal acclimatization to humid heat.     

Comparison of BMI and percentage of body fat of Indian and German children and adolescents

Today, serious health problems as overweight and obesity are not just constricted to the developed world, but also increase in the developing countries (Prentice 2006, Ramachandram et al. 2002). Focusing on this issue, BMI and percentage of body fat were compared in 2094 schoolchildren from two cross-sectional studies from India and Germany investigated in 2008 and 2009. The German children are in all age groups significantly taller, whereas the Indian children show higher values in BMI (e.g. 12 years: Indian: around 22 kg/m2; German: around 19 kg/m2) and in the percentage of body fat (e.g. 12 years: Indian: around 27%; German: around 18-20%) in most of the investigated age groups. The Indian children have significantly higher BMI between 10 and 13 (boys) respectively 14 years (girls). Indian children showed significant higher percentage of body fat between 10 and 15 years (boys) and between 8 and 16 years (girls). The difference in overweight between Indian and German children was strongest at 11 (boys) and 12 (girls) years: 70% of the Indian but 20% of the German children were classified as overweight. In countries such as India that undergo nutritional transition, a rapid increase in obesity and overweight is observed. In contrast to the industrialized countries, the risk of overweight in developing countries is associated with high socioeconomic status. Other reasons of the rapid increase of overweight in the developing countries caused by different environmental or genetic factors are discussed.     

Influence of Natal Experience on Nest-Site Selection by Urban-Nesting Cooper's Hawks

Abstract: Exposure to environmental features early in life potentially can influence the kinds of places animals select to live later in life. We examined whether there is evidence that Cooper's hawks (Accipiter cooperii) hatched in an urban environment choose sites with features similar to their natal areas when they nest for the first time. The features we examined were the nest tree species and the level of development surrounding the nest tree. We banded nestling and fledgling Cooper's hawks in Tucson, Arizona, USA, from 1994 to 2004. We then monitored nests in Tucson to identify hawks that had been hatched in the city and eventually secured a breeding site. Percent cover of buildings around first breeding nests was not related to percent cover of buildings around natal nests for either sex. There was some evidence that being hatched in a particular tree species influenced choice of tree species at first breeding sites for males, but the influence was weak. In contrast, tree species in which first-time breeders built their nests, and the sites where the trees were located relative to development, were proportional to what was available in the Tucson metropolitan area. Our data suggest that natal experience played a limited role in nest-site selection by Cooper's hawks in Tucson for the features we examined. If learning occurred, it could have been for the general structure of natal sites. Thus, any small grove of large trees planted in Tucson could be used as a nest site by Cooper's hawks regardless of the level of development surrounding the nest.     

Phylogeny of the Asian Eutropis (Squamata: Scincidae) reveals an 'into India' endemic Indian radiation

Recent generic rearrangement of the circumtropical distributed skink genus 'Mabuya' has raised a lot of debate. According to this molecular phylogeny based rearrangement, the tropical Asian members of this genus have been assigned to Eutropis. However, in these studies the Asian members of 'Mabuya' were largely sampled from Southeast (SE) Asia with very few species from Indian subcontinent. To test the validity of this assignment and to determine the evolutionary origin of Indian members of this group we sequenced one nuclear and two mitochondrial genes from most of the species from the Indian subregion. The nuclear and mitochondrial trees generated from these sequences confirmed the monophyly of the tropical Asian Eutropis. Furthermore, in the tree based on the combined mitochondrial and nuclear dataset an endemic Indian radiation was revealed that was nested within a larger Asian clade. Results of dispersal-vicariance analysis and molecular dating suggested an initial dispersal of Eutropis from SE Asia into India around 5.5-17 million years ago, giving rise to the extant members of the endemic Indian radiation. This initial dispersal was followed by two back dispersals from India into SE Asia. We also discuss the relationships within the endemic Indian radiation and its taxonomic implications.     

Coccidioidomycosis in a California sea lion (Zalophus californianus)

Coccidioidomycosis in an adult male California sea lion (Zalophus californianus) is described. The animal was housed in a zoo in Tucson, Arizona, for approximately 5 years. This is believed to be the first reported case of coccidioidomycosis in a marine mammal.     

盆栽和方池——东南亚园林的印度线索

本文以东南亚园林中的两个常见元素—盆栽和方池为例,呈现了印度文明对东南亚园林的影响。在此基础上,通过案例呈现了东南亚园林的宗教和哲学内涵以及相应的常见造园手法。以此指出,东南亚园林不只是对中国、欧洲园林的模仿,其园林设计受印度影响较大,且有一以贯之的逻辑,并能够承载深刻的思想内涵     

Prevalence of gallstones and gallbladder disease in Canadian Micmac Indian women.

The prevalence of gallstones and gallbladder disease was studied between October 1973 and June 1976 in Canadian Micmac Indian women aged 15 to 50 years in an inland rural community near Shubenacadie, NS. Of 132 women at risk 98 underwent cholecystography, 6 had a history of cholecystectomy (verified from hospital records) and 3 had cholecystectomy because of cholecystitis during the 3 years of the study. Of the 17 abnormal cholecystograms 10 showed radiolucent gallstones, and repeated studies documented gallstones in 6 of the 7 radiographs on which the gallbladder was not visualized. The prevalence of gallstones was found to be 211/1000, and that of gallbladder disease, 240/1000. The peak prevalence was at 30 to 39 years of age. The women with gallbladder disease were significantly more obese and of greater parity than those without gallbladder disease even when age was controlled. The Micmac Indian women of Nova Scotia appear to be at a much higher risk for the development of cholesterol gallstones and gallbladder disease than Caucasian women in Framingham, Massachusetts.     

Confronting the angry rock: American Indians' situated risks from radioactivity

Numic people in the western United States are co-adapted with their traditional lands and these lands are spiritually and physically co-adapted with these people. This relationship has been documented through studies funded by the Department of Energy, Nevada Operations. 1 The u.s. Department of Energy Nevada Operations studies of American Indiacultural impacts from the transportation of Low Level Radioactive Waste were managed by Frank DiSanza. Consultation with the involved tribes was guided by Robert Furlow through the American Indian Program. Elders from twenty-six Indian tribes participated in two studies in order to explain why the transportation of radioactive waste poses serious threats. Key in their interpretation is the perception that radioactive material is an angry rock. Indian knowledge and use of this rock goes back for thousands of years. As a powerful spiritual being the angry rock constitutes a threat that can neither be contained nor controlled by conventional means. It has the power to pollute food, medicine, and places, none of which can be used afterwards by Indian people. Spiritual impacts are even more threatening, given that the angry rock would pass along highways where there are animal creation places, access to spiritual beings, and unsung human souls. A most troubling concern is that radioactivity would be transported along the path to the afterlife. The juxtaposition of the angry rock and human spirits being sung to the afterlife is unthinkable.     

Sequencing and analysis of the whole genome of Indian Gujarati male

The article presents the analysis of whole genome sequence of a Gujarati Indian individual (IHGP01) that was sequenced at 23.05× coverage with a total of 74.93?Gb of sequence data generated using Illumina HiSeq 2000 platform. Variant analysis revealed over 3.9 million single nucleotide variants (SNVs) and about 393,000 small insertions and deletions (InDels) including novel variants. The known variants were analyzed for their health and disease relevance and pharmacogenomic profile. Mitochondrial and Y-chromosome haplogroup analysis clearly indicated arrival on the continent not more than 20,000–25,000?years ago, following the route out of Africa to central Europe, then into Asian continent and subsequent migration to West part of the Indian subcontinent. The current research has added 141,000 novel genetic variations to the human DNA database. Functional analysis and validation of these novel variations and revelation of their role in health and disease will add a newer dimension to understand people of this subcontinent.     

TGFbeta superfamily signaling: notes from the desert

The TGFbeta pathways play crucial roles in many developmental events, as well as contributing to many disease states. To provide a venue for both signaling and developmental research on TGFbeta, a FASEB-sponsored bi-annual meeting was initiated six years ago, the fourth of which was organized by Caroline Hill and Michael O'Connor and took place this July in Tucson, Arizona. The meeting highlighted major advances in our understanding of the structural and biochemical aspects of TGFbeta superfamily signaling, its intersection with other pathways, and its contribution to disease.     

Does Mortality Vary between Asian Subgroups in New Zealand: An Application of Hierarchical Bayesian Modelling

The aim of this paper was to see whether all-cause and cause-specific mortality rates vary between Asian ethnic subgroups, and whether overseas born Asian subgroup mortality rate ratios varied by nativity and duration of residence. We used hierarchical Bayesian methods to allow for sparse data in the analysis of linked census-mortality data for 25–75 year old New Zealanders. We found directly standardised posterior all-cause and cardiovascular mortality rates were highest for the Indian ethnic group, significantly so when compared with those of Chinese ethnicity. In contrast, cancer mortality rates were lowest for ethnic Indians. Asian overseas born subgroups have about 70% of the mortality rate of their New Zealand born Asian counterparts, a result that showed little variation by Asian subgroup or cause of death. Within the overseas born population, all-cause mortality rates for migrants living 0–9 years in New Zealand were about 60% of the mortality rate of those living more than 25 years in New Zealand regardless of ethnicity. The corresponding figure for cardiovascular mortality rates was 50%. However, while Chinese cancer mortality rates increased with duration of residence, Indian and Other Asian cancer mortality rates did not. Future research on the mechanisms of worsening of health with increased time spent in the host country is required to improve the understanding of the process, and would assist the policy-makers and health planners.     

Pathogenicity of simian-human immunodeficiency virus SHIV-89.6P and SIVmac is attenuated in cynomolgus macaques and associated with early T-lymphocyte responses

Because most studies of AIDS pathogenesis in nonhuman primates have been performed in Indian-origin rhesus macaques (Macaca mulatta), little is known about lentiviral pathogenicity and control of virus replication following infection of alternative macaque species. Here, we report the consequences of simian-human immunodeficiency virus SHIV-89.6P and SIVmac251 infection in cynomolgus (Macaca fascicularis) and rhesus macaques of Chinese origin. Compared to the pathogenicity of the same viruses in Indian rhesus macaques, both cynomolgus and Chinese rhesus macaques showed lower levels of plasma virus. By 9 to 10 months after infection, both viruses became undetectable in plasma more frequently in cynomolgus than in either Chinese or Indian rhesus macaques. Furthermore, after SHIV-89.6P infection, CD4+ T-cell numbers declined less and survival was longer in cynomolgus and Chinese rhesus macaques than in Indian rhesus macaques. This attenuated pathogenicity was associated with gamma interferon ELISPOT responses to Gag and Env that were generated earlier and of higher frequency in cynomolgus than in Indian rhesus macaques. Cynomolgus macaques also developed higher titer neutralizing antibodies against SHIV-89.6 at 10 and 20 weeks postinoculation than Indian rhesus macaques. These studies demonstrate that the pathogenicity of nonhuman primate lentiviruses varies markedly based on the species or geographic origin of the macaques infected and suggest that the cellular immune responses may contribute to the control of pathogenicity in cynomolgus macaques. While cynomolgus and Chinese rhesus macaques provide alternative animal models of lentiviral infection, the lower levels of viremia in cynomolgus macaques limit the usefulness of infection of this species for vaccine trials that utilize viral load as an experimental endpoint.     

Recent admixture in an Indian population of African ancestry

Identification and study of genetic variation in recently admixed populations not only provides insight into historical population events but also is a powerful approach for mapping disease loci. We studied a population (OG-W-IP) that is of African-Indian origin and has resided in the western part of India for 500 years; members of this population are believed to be descendants of the Bantu-speaking population of Africa. We have carried out this study by using a set of 18,534 autosomal markers common between Indian, CEPH-HGDP, and HapMap populations. Principal-components analysis clearly revealed that the African-Indian population derives its ancestry from Bantu-speaking west-African as well as Indo-European-speaking north and northwest Indian population(s). STRUCTURE and ADMIXTURE analyses show that, overall, the OG-W-IPs derive 58.7% of their genomic ancestry from their African past and have very little inter-individual ancestry variation (8.4%). The extent of linkage disequilibrium also reveals that the admixture event has been recent. Functional annotation of genes encompassing the ancestry-informative markers that are closer in allele frequency to the Indian ancestral population revealed significant enrichment of biological processes, such as ion-channel activity, and cadherins. We briefly examine the implications of determining the genetic diversity of this population, which could provide opportunities for studies involving admixture mapping.     

基因组时代的新视野: 东南亚哺乳动物类群在第四纪冰河时期多样性的起源与分化

东南亚地区东起菲律宾群岛, 西至印度次大陆, 北及中国中部, 南至巽他群岛, 涵盖了世界上25个最重要的生物多样性热点地区之中的6个, 具有极其重要的全球生物多样性保护的战略意义。该地区复杂的地质地貌和气候历史使其动植物的种类和数量都极为丰富。经典的生物地理分界线华莱士线和克拉地峡将该地区进一步划分出包括部分巽他群岛和马来半岛在内的南部巽他区和北部印度支那区两个生物多样性热点地区。主要基于形态学的生物地理学研究认为巽他区和印度支那区通过马来半岛陆地相连, 并且第四纪大部分时间海平面下降形成大陆桥, 直到一万年前该地区的众多岛屿仍与大陆连接, 促进了哺乳动物的种群迁徙与基因交流, 因此物种种群间的差别将很细微。然而近来分子遗传学研究表明, 由于其他生态因素制约, 哺乳动物的迁移能力可能比以往认为的低, 大陆桥的存在并不一定导致迁徙的发生, 许多种群的隔离早在200万年前便已形成, 并且没有因为后来冰川期海平面降低而恢复种群交流, 而距今7.3万年前发生的苏门答腊多巴超级火山爆发也可能进一步影响了物种间和物种内多样性的形成和分化。通过已有的东南亚哺乳动物种群遗传学研究结果, 我们认为物种间或种群间的差异主要表现为三个层次: 巽他区种群与印度支那区种群间约百万年尺度的分化, 巽他区不同岛屿种群间约数十万年尺度的分化, 以及发生于晚更新世的分化事件。已有的东南亚种群遗传学研究主要采用线粒体及核基因多位点数据进行分析, 而种群基因组学分析则使得获得详尽的种群历史动态成为可能, 并使我们可以进一步了解东南亚哺乳动物类群所经历的物种形成过程。     

Carpal fusions in children of four South African populations

The incidence of carpal fusions was determined from radiographs of both hands of 2,250 Pretoria schoolchildren aged 72 to 191 months. The group included White, Negro, Coloured and Indian subjects. Of the many possible varieties of carpal fusion, only lunato-triquetral fusion and capitate-hamate fusion were encountered. No examples of lunato-triquetral fusion were encountered in children less than ten years of age. In Pretoria Negroes aged 10 to 15 years, the incidence of lunato-triquetral synostosis is 4.57%, while Pretoria Coloureds show an incidence of 1.51%. This type of fusion was not noted in the White or Indian populations. Two examples of capitate-hamate synostosis were encountered in Pretoria Negroes. The available evidence suggests that these two varieties of carpal fusion may be added to the list of discrete traits varying in frequency from population to population and probably reflecting different underlying gene frequencies. No significant sex difference in incidence of lunato-triquetral fusion was noted in the present study. Lunato-triquetral fusion is about twice as commonly bilateral as unilateral in occurrence.     

Reconstructing Roma History from Genome-Wide Data

The Roma people, living throughout Europe and West Asia, are a diverse population linked by the Romani language and culture. Previous linguistic and genetic studies have suggested that the Roma migrated into Europe from South Asia about 1,000–1,500 years ago. Genetic inferences about Roma history have mostly focused on the Y chromosome and mitochondrial DNA. To explore what additional information can be learned from genome-wide data, we analyzed data from six Roma groups that we genotyped at hundreds of thousands of single nucleotide polymorphisms (SNPs). We estimate that the Roma harbor about 80% West Eurasian ancestry–derived from a combination of European and South Asian sources–and that the date of admixture of South Asian and European ancestry was about 850 years before present. We provide evidence for Eastern Europe being a major source of European ancestry, and North-west India being a major source of the South Asian ancestry in the Roma. By computing allele sharing as a measure of linkage disequilibrium, we estimate that the migration of Roma out of the Indian subcontinent was accompanied by a severe founder event, which appears to have been followed by a major demographic expansion after the arrival in Europe.