Primate Ecology and Social Structure Vol. 1: Lorises, Lemurs and Tarsiers: Primate Ecology and Social Structure Vol. 2: New World Monkeys: Primate Ecology and Social Structure Vol. 3: Old World Monkeys and Apes

Primate Ecology and Social Structure Vol. 1: Lorises, Lemurs and Tarsiers. Robert W. Sussman. Needham Heights. MA: Pearson Custom Publishing, 1999. 284 pp.
Primate Ecology and Social Structure Vol. 2: New World Monkeys. Robert W. Sussman. Needham Heights. MA: Pearson Custom Publishing, 2000. 207 pp.
Primate Ecology and Social Structure Vol. 3: Old World Monkeys and Apes. Robert W. Sussman. Needham Heights. MA: Pearson Custom Publishing, in press.     

The Cambridge History of the Native Peoples of the Americas: Vol. 2: Mesoamerica, Part 1.; The Cambridge History of the Native Peoples of the Americas: Vol. 2: Mesoamerica, Part 2.

The Cambridge History of the Native Peoples of the Americas: Vol. 2: Mesoamerica, Part 1. Richard E. W. Adams and Murdo J. MacLeod. eds. Cambridge: Cambridge University Press, 2000. 571 pp.
The Cambridge History of the Native Peoples of the Americas: Vol. 2: Mesoamerica, Part 2. Richard E. W. Adams and Murdo J. MacLeod. eds. Cambridge: Cambridge University Press, 2000. 455 pp.     

The Cambridge History of the Native Peoples of the Americas Vol. 3: South America, part 2

The Cambridge History of the Native Peoples of the Americas: Vol. 3: South America, part 2. Frank Salomon and Stuart B. Schwartz. eds. New York: Cambridge University Press, 1999. 976 pp.     

An American Anthropologist in Melanesia: A. B. Lewis and the Joseph N. Field South Pacific Expedition, 1909–1913

An American Anthropologist in Melanesia: A. B. Lewis and the Joseph N. Field South Pacific Expedition, 1909–1913. Robert L. Welsch. ed. and annotator. Honolulu: University of Hawaii Press. 1998. Vol. l, xxi. 632pp.; Vol.2,268pp.     

Two comments on Fredrik Barth's selected essays,Barth's ‘Empirical Science’: A review article

Selected Essays of Fredrik Earth: Vol. 1.: Process and Form in Social Life. pp. 243. £13.95. Vol. 2.: Features of Person and Society in Swat: Collected Essays on Pathans. pp. 190. £12.95. Routledge and Kegan Paul, London.     

Thermodynamic substantiation of water-bridged collagen structure.

A solution of the problem of topology of a hydrogen bond net in a triple helix of collagen is suggested on the basis of an analysis of thermodynamic data on denaturation of phylogenetically different collagen [T. V. Burjanadze (1982), Vol. 21, pp. 1489-1501; T. V. Burjanadze, E. I. Tiktopulo, and P. L. Privalov (1987), Dokl. Akad. Nauk. USSR, Vol. 293, pp. 720-724] as well as on the earlier evaluation of the energy of the OH group of the 4-hydroxyproline bond [A. R. Ward and P. Mason (1973), Journal of Molecular Biology, Vol. 29, pp. 431-435]. It is shown that only the water-bridged collagen structure [G. N. Ramachandran and R. Chandrasekharan (1968), Biopolymers, Vol. 6, pp. 1649-1661; G. N. Ramachandran, M. Bansal, and R. S. Bhatnagar (1973), Biochimica Biophysica Acta, Vol. 322, pp. 166-171; M. Bansal, C. Ramakrishnan, and G. N. Ramachandran (1975), Proceedings of the Indian Academy of Sciences, Vol. 82, pp. 152-164] can explain both the change of thermostability upon proline hydroxylation [J. Rosenbloom, M. Harsch, and S. Jimenez (1973), Archives of Biochemistry and Biophysics, Vol. 158, pp. 478-484] and its phylogenetic change [T. V. Burjanadze (1982)].     

Three Approaches to the Study of Language and Gender

Gender across Languages: The Linguistic Representation of Women and Men. Vol. 2. Marlis Hellinger and Hadumod Bußmann eds. Amsterdam: John Benjamins, 2002. 348 pp.
Gender Identity and Discourse Analysis. Lia Litosseliti and Jane Sunderland eds. Amsterdam: John Benjamins, 2002. 335 pp.
Talking Gender and Sexuality. Paul McIlvenny. ed. Amsterdam: John Benjamins, 2002. 327 pp.     

Author Index,Vol. 58 (2005)

Author Index

Author Index, Vol. 58 (2005)     

On the stability of different experimental dimeric structures of the SL1 sequence from the genomic RNA of HIV-1 in solution: a molecular dynamics simulation and electrophoresis study

SL1 is a stem-loop RNA sequence from the genome of HIV-1 thought to be the initiation site for the dimerization of the retroviral genomic RNA. The aim of this study is to check the stability in solution of different experimental dimeric structures available in the literature. Two kinds of dimer have been evidenced: an extended duplex looking like a double helix with two internal bulges and a kissing complex in which the monomers with a stem/loop conformation are linked by intermolecular loop-loop interactions. Two divergent experimental structures of the kissing complex from the Lai isolate are reported in the literature, one obtained from NMR (Mujeeb et al., Nature Structural Biology, 1998, Vol. 5, pp. 432-436) and the other one from x-ray crystallography (Ennifar et al., Nature Structural Biology, 2001, Vol. 8, pp. 1064-1068). A crystallographic structure of the Mal isolate was also reported (Ennifar et al., Nature Structure Biology, 2001, Vol. 8, pp. 1064-1068). Concerning the extended duplex, a NMR structure is available for Lai (Girard et al., Journal of Biomolecular Structure and Dynamics, 1999, Vol. 16, pp. 1145-1157) and a crystallographic structure for Mal (Ennifar et al., Structure, 1999, Vol. 7, pp. 1439-1449). Using a molecular dynamics technique, all these experimental structures have been simulated in solution with explicit water and counterions. We show that both extended duplex structures are stable. On the contrary, the crystallographic structures of the Lai and Mal kissing complexes are rapidly destabilized in aqueous environment. Finally, the NMR structure of the Lai loop-loop kissing complex remains globally stable over a 20 ns MD simulation, although large rearrangements occur at the level of the stem/loop junctions that are flexible, as shown from free energy calculations. These results are compared to electrophoresis experiments on dimer formation.     

Author Index,Vol. 59 (2005)

Author Index

Author Index, Vol. 59 (2005)     

Author index,Vol. 53 (2003)

Authors Index

Author index, Vol. 53 (2003)     

Damaged-bone adaptation under steady homogeneous stress

In this work an extension of the adaptive-elasticity theory is proposed in order to include the contribution of bone microdamage as a stimulus. Some aspects of damaged-bone tissue adaptation, brought about by a change of the daily loading history, are investigated. In particular, under the assumption of a small strain approximation and isothermal conditions, the solution of the remodeling rate equation for steady homogeneous stress is discussed and the damage effect upon the remodeling time constant is shown. The result is both theoretical and numerical, based on a recent theory of internal damaged-bone remodeling (Ramtani, S., and Zidi, M., 1999, "Damaged-Bone Remodeling Theory: Thermodynamical Approach, " Mechanics Research Communications, Vol. 26, pp. 701-708. Ramtani, S., and Zidi, M., 2001, "A Theoretical Model of the Effect of Continum Damage on a Bone Adaption Model," Journal of Biomechanics, Vol. 34, pp. 471-479) and motivated by the works of Cowin, S. C., and Hegedus, D. M., 1976, "Bone Remodeling I: Theory and Adaptive Elasticity," Journal of Elasticity, Vol. 6, pp. 471-479 and Hegedus, D. H., and Cowin, S. C., 1976, "Bone Remodeling II: Small Strain Adaptive Elasticity," Journal of Elasticity, Vol. 6, pp. 337-352.     

Assessment of protein rotational diffusion by 13C off-resonance rotating frame spin–lattice relaxation: Effect of backbone and side-chain internal motion

The ¹³C off-resonance rotating frame spin–lattice relaxation technique is applicable to the study of protein rotational diffusion behavior in a variety of experimental situations. The original formalism of James and co-workers (1978) (J. Am. Chem. Soc. Vol. 100, pp. 3590–3594) incorporated random isotropic reorientational motion of a rigid spherical rotor with no provision for backbone or side-chain carbonyl group internal motion. Here we demonstrate that the failure to include such internal motion may lead to erroneous rotational correlation time determinations for overall reorientational motion. The effect becomes severe for protein molecular masses in excess of 100 kD. Inclusion of both backbone and side-chain carbonyl carbon internal motion, using reasonable parameters derived from the literature [R. Levy and M. Karplus (1979), Chemical Physics Letters, Vol. 65, pp. 4–11; G. Careri, P. Fasella, and E. Gratton (1975), Critical Reviews in Biochemistry, Vol. 3, pp. 141–164; G. Lipari, A. Szabo, and R. Levy (1982), Nature, Vol. 300, pp. 197–198], plus corrections for anisotropic tumbling [C. F. Morgan, T. Schleich, G. H. Caines, and D. Michael (1990), Biopolymers, Vol. 29, pp. 469–480] and microscopic viscosity [S. H. Koenig (1980), ACS Symposium. Series, Vol. 127, pp. 157–176], leads to reliable values for the correlation time describing overall protein reorientation up to molecular masses of approximately 1000 kD. © 1993 John Wiley & Sons, Inc.     

Plant growth analysis: an evaluation of experimental design and computational methods

Journal of Experimental Botany, Vol. 47, No. 302, pp. 1343–1351,September 1996 On page 1345, equation (2) should have read:      

Symmetry and structure of RNA and DNA triple helices

Despite wide interest in nucleic acid triple helices, there has beenno stereochemically satisfactory structure of an RNA triple helixin atomic detail. An RNA triplex structure has previously been proposed based on fiber diffraction and molecular modeling [S. Arnott and P. J. Bond (1973) Nature New Biology, Vol. 244. pp. 99–101; S. Arnott. P. J. Bond. E. Seising, and P. J. C. Smith (1976) Nucleic Acids Research, Vol. 3. pp.2459–2470], but it has nonallowed close contacts at every triplet and is therefore not stereochemically acceptable. We propose here a new modelfor an RNA triple helix in which the three chains have identical backbone conformations and are symmetry related. There are no short contacts. The modeling employs a novel geometrical approach using the linked atom least squares [P. J. C. Smith and S. Arnott (1978) Acta Crystallographica, Vol. A34, pp. 3–11] program and is not based on energy minimization. In general, the method leads to a range of possible structures rather than a unique structure. In the present case, however, the constraints resulting from theintroduction of a third strand limit the possible structures to a very small range of conformation space. This method was used previously to obtain a model for DNA triple helices [G. Raghunathan, H. T. Miles, and V. Sasisekharan (1993) Biochemistry, Vol. 32, pp. 455–462], subsequently confirmed by fiber-type x-ray diffraction of oligomeric crystals [K. Liu. H. T. Miles. K. D. Parris, and V. Sasisekharan (1994) Nature Structural Biology, Vol. 1. pp. 11–12]. The above triple helices have Watson–Crick–Hoogsteen [K. Hoogsteen (1963) Acta Crystallographica, Vol. 16. pp. 907–916] pairing of the three bases. The same modeling method was used to investigate the feasibility of three-dimensional structures based on the three possible alternative hydrogen-bonding schemes: Watson–Crick–reverse Hoogsteen, Donogue [J. Donohue (1953) Proceeding of the national Academy of Science USA, Vol. 39, pp. 470–475] (reverse Watson–Crick)–Hoogsteen, and Donohue–reverse Hoogsteen. We found that none of these can occur in either RNA or DNA helices because they give rise only to structures with prohibitively short contacts between backbone and base atoms in the same chain. © 1995 John Wiley & Sons, Inc.     

Nomenclatural notes to Flora Nordica Vol. 6 (Thymelaeaceae–Apiaceae)

The following names in Flora Nordica Vol. 6 are subject to nomenclatural action: Helianthemum oelandicum var. canescens (typified), Epilobium hornemannii (typified), Oenothera nuda (validated), Myriophyllum spicatum (emendation of typification), Viola rupestris subsp. relicta (typified), Hippophaë rhamnoides (typified), Angelica archangelica subsp. littoralis (typified). – Flora Nordica Note no. 35.     

Book reviews

Music in Java. Its history, its theory and its technique. J. Kunst. (Second, revised and enlarged edition translated from the Dutch language by Emile van Loo. Vol. I: XVI + 412 pp. 4°. With tables and musical examples. Vol. II: pp. 413–640, including 165 illustrations on art paper. The Hague 1949. Martinus Nijhoff. Price: Guilders 46.)

The Megalithic Culture of Melanesia. Alphonse Riesenfeld. (736 pp., 3 pls., 8 maps, 26 figs. E. J. Brill. 8°. Leyden 1950.)

Chimu. Eine altindianische Hochkultur. Gerdt Kutscher. (112 pp., 80 pls., 77 text illus. 4°. Verlag Gebr. Mann. Berlin 1950.)     

Book Reviews

Book reviewed in this article:
Trees of Ireland. Native and Naturalized. E. Charles Nelson and Wendy F. Walsh. 256 pp., 30 colour plates.
A man who can speak of plants. Dr Thomas Coulter (1793–1843) of Dundalk in Ireland, Mexico and Alta California. E. Charles Nelson & Alan Probert. 192 pp., 52 figures & photographs and 8 colour plates.
Siebold's Florilegium of Japanese Plants: Florilegium Plantarum Japonicarum Sieboldii. Yojiro Kimura and Valerii I. Grubov (eds.). Vol. 1, 2 parts (Colour plates); Vol. 2 (Articles and Catalogue).     

Probing protein structure by solvent perturbation of nmr spectra. II. Determination of surface and buried residues in homologous proteins

The experimental assignment of most residues in a protein to the surface or interior is in principle possible without prior solution of a complete three-dimensional structure. The method described is based on nmr measurements that determine the amino acid composition of the surface of a protein [A. Petros, L. Mueller, and K. D. Kopple (1990) Biochemistry, Vol. 29, pp. 10041–10048; G. Esposito, A. M. Lesk, H. Molinari, A. Motta, N. Niccolai, and A. Pastore (1992) Journal of Molecular Biology, Vol. 224, pp. 659–670]. If these measurements are carried out on several homologous proteins of known sequence, it is possible to combine the results to determine, in most cases, which positions in the sequence contain exposed residues. © 1993 John Wiley & Sons, Inc.