Decay of Branchiostoma: implications for soft-tissue preservation in conodonts and other primitive chordates

Decay experiments on the cephalochordate Branchiostoma lanceolatum ('amphioxus') demonstrate that the most decay resistant structures are the notochord sheath and the cartilaginous rods which support the gill bars. However, even more labile soft parts, such as the muscles and skin may survive for at least 124 days under totally anoxic conditions. As the chevron-shaped muscles of the myomeres shrink and collapse, those on opposite sides of the trunk maybe displaced, resulting in pronounced offsetting. Only 1.42% of the initial dry weight of Branchiostoma is resistant to alkali and acid hydrolysis, compared to 46% in the polychaete Nereis virens. Branchiostoma is only likely to be fossilized as a result of decay inhibition and replication by early diagenetic minerals. The results of these experiments cast light on the interpretation of a number of primitive fossil chordates. There is no reason to infer extracellular decay-resistant cuticle in the Burgess Shale Pikaia. The axial lies preserved in the conodont animal specimens from the Carboniferous of Edinburgh, Scotland, represent the notochord. The displacement of the elements to one side of the head reflects the true position of the apparatus - the surrounding tissue has been lost through decay. The chevron-shaped structures in the Carboniferous chordate Conopiscius are the muscles of the myomeres, not external scales. The lines delineating the segments in the Silurian Jamoytius most likely represent the myosepta. There is some doubt about the nature of the only specimen interpreted as a fossil cephalochordate, Palaeobranchiostoma hamatotergum from the Permian of South Africa. □ Taphonomy, decay, softparts, Cephalochordata , Branchiostoma, lancelet, Chordata , Pikaia, conodont , Conopiscius, Jamoytius, Palaeobranchiostoma.     

Taphonomy and affinity of an enigmatic Silurian vertebrate,Jamoytius kerwoodi White

Abstract: The anatomy and affinities of Jamoytius kerwoodi White have long been controversial, because its complex taphonomy makes unequivocal interpretation impossible with the methodology used in previous studies. Topological analysis, model reconstruction and elemental analysis, followed by anatomical interpretation, allow features to be identified more rigorously and support the hypothesis that Jamoytius is a jawless vertebrate. The preserved features of Jamoytius include W‐shaped phosphatic scales, 10 or more pairs of branchial openings, optic capsules, a circular, subterminal mouth and a single terminal nasal opening. Interpretations of paired ‘appendages’ remain equivocal. Phylogenetic analysis places Jamoytius and Euphanerops together (Jamoytiiformes), as stem‐gnathostomes rather than lamprey related or sister taxon to Anaspida.     

Angiogenesis and the role of the endothelial nicotinic acetylcholine receptor

An endothelial nicotinic acetycholine receptor (nAChR) mediates endothelial proliferation, survival, migration and tube formation in vitro, and angiogenesis in vivo. Exogenous nicotine stimulates this angiogenic pathway. This action of nicotine may contribute to tumor angiogenesis and tumor growth; atherosclerotic plaque neovascularization and progression; and other tobacco-related diseases. The endothelial nAChR mediates an angiogenic pathway that is interdependent with growth factor mediated pathways, as shown by pharmacological and molecular studies. The characterization of this new angiogenic pathway may provide a new therapeutic avenue for disorders of insufficient or pathological angiogenesis.     

Alien Invasions, Ecological Restoration in Cities and the Loss of Ecological Memory

After a community or ecosystem is lost, it may leave behind an ecological memory. The site history, soil properties, spores, seeds, stem fragments, mycorrhizae, species, populations, and other remnants may influence the composition of the replacement community or ecosystem to varying degrees. The remnants may also hold the site to a trajectory that has implications for ecological restoration. This is true in urban situations in particular where repeated disturbance has masked the history of the site. The ecological memory remaining may be insufficient for a site to heal itself; restoration activities are required to direct the future of the site. Conversely, in light of climate change and other rapidly changing environments, the existing ecological memory may be poorly suited to the new conditions and restoration projects need to create new and perhaps novel ecosystems. The loss of ecological memory facilitates the establishment of foreign invasive species. These invasives may eventually create a new stability domain with its own ecological memory and degree of resilience. To be successful, invasive species control must address both internal within patch memory of invasives and external between patch memory. Further research is necessary to document and conserve ecological memory for ecological restoration in response to future ecosystem changes.     

Recent climatic changes recorded by the salinity of pore waters in the Dead Sea sediments

A new, flow-through benthic corer is described and compared to other commonly used coring methods. The new corer compares favorably with diver coring and is superior to coring with a ball-type, check valve corer, based on recovery of meiofauna, macrofauna, and particle bound hydrocarbons. Check valve corers yielded the most variable results. The new corer may be used to efficiently obtain samples of surface sediments from shallow (<6 m) water, where a reasonably stable working platform is available.     

The jewels of our genome: the search for the genomic changes underlying the evolutionarily unique capacities of the human brain

The recent publication of the initial sequence and analysis of the chimp genome allows us, for the first time, to compare our genome with that of our closest living evolutionary relative. With more primate genome sequences being pursued, and with other genome-wide, cross-species comparative techniques emerging, we are entering an era in which we will be able to carry out genomic comparisons of unprecedented scope and detail. These studies should yield a bounty of new insights about the genes and genomic features that are unique to our species as well as those that are unique to other primate lineages, and may begin to causally link some of these to lineage-specific phenotypic characteristics. The most intriguing potential of these new approaches will be in the area of evolutionary neurogenomics and in the possibility that the key human lineage–specific (HLS) genomic changes that underlie the evolution of the human brain will be identified. Such new knowledge should provide fresh insights into neuronal development and higher cognitive function and dysfunction, and may possibly uncover biological mechanisms for information storage, analysis, and retrieval never previously seen.     

Four new species of the myrmecophile Diplocotes Westwood (Coleoptera: Ptinidae) from Queensland and South Australia

Abstract  Four new species of the Australian ptinid genus Diplocotes are described. Two of these species are from the dry tropical and subtropical areas of northern and central Queensland, while the other two are from the arid areas of South Australia. While the four new species described here have not been observed with ants in the field, the species of this genus are known to be myrmecophilous, and similar interactions may occur between the new species and their host ants. Additionally, many characters are shared with other unrelated myrmecophilous species, and may be convergent adaptations to the ant-associated lifestyle.     

The vacuolar-atpase of Paramecium multimicronucleatum: gene structure of the B subunit and the dynamics of the V-ATPase-rich osmoregulatory membranes

Previous studies have shown that the vacuolar-ATPase (V-ATPase) of the contractile vacuole complexes (CVCs) in Paramecium multimicronucleatum is necessary for fluid segregation and osmoregulation. In the current study, immunofluorescence showed that the development of a new CVC begins with the formation of a new pore around which the collecting canals form. The decorated membranes are then deposited around the newly formed collecting canals. Quick-freeze deep-etch techniques reveal that six 10-nm-wide V-ATPase V, sectors, tightly packed into a 20 x 30-nm rectangle, form two rows of these compacted sectors that helically wrap around the cytosolic side of decorated membrane tubules. During new CVC formation, packing of decorated tubules around mature CVCs was temporarily disrupted so that some of these decorated tubules became transformed into decorated vesicles. Freeze-fracturing of these decorated vesicles revealed a highly pitted E-face and a particulate P-face. The V-ATPase was purified for the first time in any ciliated protozoan and shown to contain, as in other cells, the V1 subunits A to E, and four 14-20 kDa polypeptides. The B subunit was cloned and found to be encoded by one gene containing four short introns. This subunit has 510 amino acid residues with a predicted molecular weight of 56.8 kDa, a value similar to B subunits of other organisms. Except for the N- and C-termini, it has a 75% sequence identity with other B subunits, suggesting that the B subunits in Paramecium, like other species, have been conserved and that the entire surface of this subunit may be important in interacting with other subunits.     

A new method for quantifying encephalization in the growing individual

Here we describe a new method for quantifying encephalization in the growing individual and provide a worked example of the methods. The new method is based on the use of conditional SD scores derived from brain and body growth references. These encephalization SD scores control for age, sex and body size effects on brain size, and therefore, control for the confounds associated with allometry as well as growth differences between the brain and body and between the sexes. The methods also control for distribution skewness. Encephalization SD scores derived from pre- and post-natal data may be directly compared and changes in SD score over time assessed. These methods may be applied to a broad range of data where relative size during growth is to be quantified. Derived SD scores may also be applied to correlation and regression analyses where statistical relationships with other variables are of interest.     

Hyperresponsiveness in the human nasal airway: new targets for the treatment of allergic airway disease

Allergic rhinitis is a condition which affects over 15% of the population in the United Kingdom. The pathological process involves two stages: nasal inflammation, and the development of nasal airway hyperresponsiveness (AHR) to allergen and a number of other stimuli. This results in the amplification of any subsequent allergic reaction, contributing to the chronic allergic state. A number of different hypotheses have been proposed to explain the underlying mechanism of AHR, including a role for eosinophil-derived proteins, free radicals and neuropeptides. While there may be a number of independent pathways which can result in AHR, evidence obtained from both animal models and in vivo experiments in humans indicate that some mediators may interact with one another, resulting in AHR. Further research into these interactions may open new avenues for the pharmacological treatment of chronic allergic rhinitis, and possibly other allergic airway diseases.     

Identification of New Members of the Gas2 and Ras Families in the 22q12 Chromosome Region

Monitoring of loss of heterozygosity in human tumors has suggested that the 22q12 region may contain another tumor suppressor gene(s) in addition to the NF2 gene. The genomic sequencing of a 40-kb region bounded by the EWS and BAM22 genes and containing a CpG-rich region has identified two new genes in the q12 region of chromosome 22. One of them, GAR22, is closely related to mouse Gas2, a gene isolated as being negatively regulated by serum and growth factors and exhibiting a high expression in growth arrested mouse fibroblasts. The other, RRP22, belongs to the Ras superfamily, in which it defines a new subgroup. Its expression appears to be strictly limited to the central nervous system. Growth-arrest-specific and Ras-related genes are likely candidates to be involved in tumorigenic processes. Although no mutation was observed in a small set of meningiomas and schwannomas, alteration of these new genes should now be searched in other tumors with frequent allelic losses on chromosome 22 not associated with NF2 mutation.     

Current perspectives in the virology and molecular biology of hepatitis A virus

Several unique features of hepatitis A virus (HAV) support its classification within a new genus, hepatovirus, of the family Picornaviridae. The structure of the HAV capsid may differ from other picornaviruses as indirect evidence suggests the absence of a myristylated VP4 protein. The replication of HAV is unusually slow in cell culture and typically results in persistent infection. Other evidence suggests fundamental differences between HAV and other picornaviruses with respect to viral translation, polyprotein processing and RNA replication.     

New medium for solubilizing proteins of the eye lens core (nucleus)

The eye lens core (nucleus) is a practical source of proteins for use as genetic markers. A new, simple extraction solution for these proteins is described. The solution was tested on fish (mullet, rockfish, and barracuda) lens nuclei, which produced weak extracts with other extraction media. A new solution, in addition to producing the strongest extracts, demonstrated desirable qualities relating to electrophoresis and storage. This solution may serve as a general extraction solution for nuclear lens proteins.     

Effects of various medical and social pracitices on the frequency of genetic disorders.

The effects of a number of new medical and social practices on the incidence of genetic diseases and gene frequency have been studied. The results deal with short-term effects, since these are of most practical importance, and with the combined effects of several factors acting together. The size of any effects depends on the feasibility of the different practices and on the extent to which they are adopted by the population. Most of the practices reduce the incidence of the diseases in the next generation, but some may be dysgenic. For example, improved treatment of affected individuals in dominant and X-linked diseases could lead to improved reproductive fitness, higher gene frequencies, and to an increased incidence in future generations. However, such deleterious effects may be avoided by genetic counseling or offset by other preventive practices. In recessive disorders, a small reduction in the average fitness of carfiers detected by population screening would outweigh any deleterious effects of other practices. In general there seems to be little cause for alarm about the deleteious effects of the new medical and social practices being adopted.     

Reducing Post Analytical Error: Perspectives on New Formats for the Blood Sciences Pathology Report

Little has changed in the way we report pathology results from blood sciences over the last 50 years other than moving to electronic display from paper. In part, this is aspiration to preserve the format of a paper report in electronic format. It is also due to the limitations of electronic media to display the data. The advancement of web-based technologies and functionality of hand-held devices together with wireless and other technologies afford the opportunity to rethink data presentation with the aim of emphasising the message in the data, thereby modifying clinical behaviours and potentially reducing post-analytical error. This article takes the form of a commentary which explores new developments in the field of infographics and, together with examples, suggests some new approaches to communicating what is currently just data into information. The combination of graphics and a new approach to provocative interpretative commenting offers a powerful tool in improving pathology utilisation. An additional challenge is the requirement to consider how pathology reports may be issued directly to patients.     

New data on the late Neandertals: Direct dating of the Belgian Spy fossils

In Eurasia, the period between 40,000 and 30,000 BP saw the replacement of Neandertals by anatomically modern humans (AMH) during and after the Middle to Upper Paleolithic transition. The human fossil record for this period is very poorly defined with no overlap between Neandertals and AMH on the basis of direct dates. Four new ¹⁴C dates were obtained on the two adult Neandertals from Spy (Belgium). The results show that Neandertals survived to at least ≈36,000 BP in Belgium and that the Spy fossils may be associated to the Lincombian–Ranisian–Jerzmanowician, a transitional techno‐complex defined in northwest Europe and recognized in the Spy collections. The new data suggest that hypotheses other than Neandertal acculturation by AMH may be considered in this part of Europe. Am J Phys Anthropol, 2009. © 2008 Wiley‐Liss, Inc.     

Baetimyces, a new genus of Harpellales, and first report of Legeriomyces ramosus from the northeastern Iberian Peninsula

Baetimyces, belonging to the Legeriomycetaceae, is described here as a new genus. Its single species, B. ancorae, has been found growing in the hindgut of mayfly nymphs of the genus Baetis (Ephemeroptera, Baetidae) inhabiting a Pyrenean Mountains canal-stream from the northeastern region of the Iberian Peninsula. The new genus is characterized by having trichospores with two thick appendages of unequal length, and by zygospores perpendicularly and medially attached to the zygosporophore. The new genus may be related to Glotzia, Legeriomyes, and Zygopolaris, and similarities with these and other genera are compared and discussed. The new species often coexists in the same gut with Legeriomyces ramosus, which is reported for the first time in Spain.     

Characterization of a New Vaccinia virus Isolate Reveals the C23L Gene as a Putative Genetic Marker for Autochthonous Group 1 Brazilian Vaccinia virus

Since 1999, several Vaccinia virus (VACV) isolates, the etiological agents of bovine vaccinia (BV), have been frequently isolated and characterized with various biological and molecular methods. The results from these approaches have grouped these VACV isolates into two different clusters. This dichotomy has elicited debates surrounding the origin of the Brazilian VACV and its epidemiological significance. To ascertain vital information to settle these debates, we and other research groups have made efforts to identify molecular markers to discriminate VACV from other viruses of the genus Orthopoxvirus (OPV) and other VACV-BR groups. In this way, some genes have been identified as useful markers to discriminate between the VACV-BR groups. However, new markers are needed to infer ancestry and to correlate each sample or group with its unique epidemiological and biological features. The aims of this work were to characterize a new VACV isolate (VACV DMTV-2005) molecularly and biologically using conserved and non-conserved gene analyses for phylogenetic inference and to search for new genes that would elucidate the VACV-BR dichotomy. The VACV DMTV-2005 isolate reported in this study is biologically and phylogenetically clustered with other strains of Group 1 VACV-BR, the most prevalent VACV group that was isolated during the bovine vaccinia outbreaks in Brazil. Sequence analysis of C23L, the gene that encodes for the CC-chemokine-binding protein, revealed a ten-nucleotide deletion, which is a new Group 1 Brazilian VACV genetic marker. This deletion in the C23L open reading frame produces a premature stop-codon that is shared by all Group 1 VACV-BR strains and may also reflect the VACV-BR dichotomy; the deletion can also be considered to be a putative genetic marker for non-virulent Brazilian VACV isolates and may be used for the detection and molecular characterization of new isolates.     

On the Possibility of Correcting Pathology of the Peripheral Nervous System by Physical Factors Emerging during the Functioning of EPR,NMR, and NGR

Study of the mechanisms of influence of electron paramagnetic resonance (EPR), nuclear magnetic resonance (NMR), and nuclear γ-resonance (NGR) on normal and pathological living systems is medically promising for development of new treatment methods. In addition, this approach may be used to search for materials for nerve prosthetics. These techniques may expand the range of modern experimental and clinical methods of diagnosing and treating a number of pathologies. The devices used may physically affect biochemical processes in the body in the EPR, NMR, and NGR regimes, simultaneously recording these processes. The use of these devices in pathology models may be helpful for correcting pathological processes, in particular, by strengthening conduction in the nerve-muscle preparation; they may also influence free radicals, which probably play a role in reducing conduction of nerve fibers. The treatment by EPR and NMR (NGR conditions) suggested here may also be used together with pharmacological or other methods.