The conservation of critically endangered flightless birds in New Zealand

The current status of Kakapo Strigops habroptilus and Takahe Porphyrio mantelli is described along with recent developments in programmes for their conservation. Both species were (at different times) thought to be effectively extinct, and both have been temporarily reprieved by the discovery of new populations. Population declines have continued, with Kakapo now reduced to less than 50 individuals and Takahe to about 150. Kakapo are especially at risk; 87% of the remaining birds are over 14 years old and only 17 females are known. Research on relict populations of both species has identified predation and competition from introduced mammals as major threats. Both species have high rates of egg infertility and low survival of young. Increasingly intensive management of both Kakapo and Takahe over recent years has included translocation to predator-free island refuges, supplementary feeding to encourage breeding, clutch manipulation, captive rearing and predator control. All known Kakapo have now been transferred to three island refuges, where the overall rate of population decline has slowed and supplementary feeding has apparently encouraged more frequent breeding attempts. Takahe conservation has concentrated largely on attempts to increase the population in Fiordland, New Zealand, through clutch manipulation and release of captive-reared young, but birds have also been released on four islands, which now hold 19% of the total population. The relict Fiordland populations of both Kakapo and Takahe were confined to apparently suboptimal habitat. Both species have successfully adapted to novel environments and foods when translocated, and the populations which now exist present improved opportunities for intensive management using a range of conservation techniques to enhance productivity and survival. Recent population trends of Kakapo and Takahe are reconstructed, and the contribution of research to their conservation is reviewed.     

Tourism and recreation a global threat to orchids

Orchidaceae is a mega diverse family accounting for 10% of the world’s flowering plants. Due to factors such as small dispersed populations, specific symbiosis with fungi and with pollinators and their desirability for collecting, many orchids are threatened with extinction. Tourism and recreation is increasingly recognised as a global threat for plants, but is it an issue for orchids? When data on orchids from the International Union for Nature Conservation (IUCN) Red List was reviewed, we found that 149 (40%) of the 442 orchid species with threat data were at risk from tourism and recreation. This included: 98 (22%) species threatened by residential and commercial development for tourism and recreation, 75 (17%) by intentional collecting within protected areas, and 90 (20%) by human intrusions and disturbance from recreational activities. The three threats often co-occurred and hence can be treated as a threat syndrome. The proportion of species threatened varied among locations with 80% of the 65 species in East Asia, 32% of 68 species in South and Southeast Asia and 94% of 16 orchid species in Europe threatened by tourism and recreation. Terrestrial orchids and those growing in forests were more likely to be at risk from these threats. With so many species at risk, increased awareness and recognition of these threats combined with improved management to reduce impacts is needed. Gaps and inconsistencies in the IUCN Red List must also be addressed to obtain a better understanding of the extent of this, and other threats to plants.     

NSAIDs and scavenging birds: potential impacts beyond Asia's critically endangered vultures

Veterinary treatment of livestock with diclofenac, a non-steroidal anti-inflammatory drug (NSAID), has caused catastrophic declines of Gyps vultures in Asia. This has highlighted a lack of knowledge on the potential impacts of NSAIDs on scavenging birds. Surveys of veterinarians and zoos document the outcomes of the treatment of over 870 scavenging birds from 79 species. As well as diclofenac, carprofen and flunixin were associated with mortality, with deaths observed in 13 and 30% of cases, respectively. Mortality was also found following treatment with ibuprofen and phenylbutazone. NSAID toxicity was reported for raptors, storks, cranes and owls, suggesting that the potential conservation impact of NSAIDs may extend beyond Gyps vultures and could be significant for New World vultures. In contrast, there were no reported mortalities for the NSAID meloxicam, which was administered to over 700 birds from 60 species. The relative safety of meloxicam supports other studies indicating the suitability of this NSAID to replace diclofenac in Asia.     

Applying DNA barcoding to conservation practice: a case study of endangered birds and large mammals in China

Owning to advantages over traditional species identification methods, DNA barcoding is suggested to be a promising tool in conservation research. However, the use of DNA barcoding to accurately identify unknown samples in conservation practices has not been well documented in the literature. To illustrate this issue, we implemented a survey of endangered birds and mammals in China based on mitochondrial Cytochrome c Oxidase subunit I (COI) gene. We included mostly confiscated specimens and non-invasive samples while concealing species information to simulate real-world scenarios of identification. In total, 47 avian and 39 mammalian specimen were re-identified by sequential analyses of online species assignment, genetic distances, phylogenetic reconstruction, and diagnostic nucleotide method. With this multiple analyses approach, 82 individuals were accurately assigned to the species level and four individuals to the genus level. 78.72% of the avian specimen and 87.18% of mammalian specimen identifications were consistent with morphological classification. Among those inconsistent with morphological classification, we identified several potential errors including misidentification based on morphology and mislabelling that may have occurred while combining results from different analytical methods. Our case study not only enriches the barcode database, but also reports a successful application of DNA barcoding identification to conservation practices, which could effectively facilitate species identification of unknown samples in conservation practices in the future.     

Using predictive modelling to guide the conservation of a critically endangered coastal wetland amphibian

Amphibians are the most threatened Class of vertebrate, with wetland-associated anurans in particular suffering high levels of habitat loss. We used predictive modelling to better understand the distribution of a critically endangered South African endemic (Hyperolius pickersgilli) and to guide conservation action. MaxEnt distribution models were produced based on limited occurrence data. Predicted localities with probability of occurrence ≥60% were surveyed. Ten new sub-populations were discovered. The mean probability of occurrence for the species at wetlands where it was detected was greater than that at wetlands where it was not detected or absent. In addition, 17 known historical localities were re-visited and the species deemed absent at 8 of these. The total number of localities at which the species is now known to occur is 18, which is an increase in the known extant sub-populations of six. We recalculate the area of occupancy and extent of occurrence for the species as 108 km² and 2081.5 km², respectively; both increases on previous estimates. Implications of these changes on the IUCN Red List status of H. pickersgilli are discussed. A friction map was created to identify possible linkages between sub-populations, which can be used to guide habitat restoration and population repatriation. Given the degree of isolation of subpopulations and the potentially severe threats to most of these, urgent conservation action for H. pickersgilli remains crucial. This study provides a method for use in conservation planning for wetland-breeding amphibians in eastern coastal regions of Africa and elsewhere.     

Translocation as an ultimate conservation measure for the long-term survival of a critically endangered freshwater mussel

Hydrobiologia - Pseudunio auricularius (Spengler, 1793) is one of the most threatened unionid species worldwide. Translocation is considered one of the ultimate actions that can save this species...     

Identifying priority areas for conservation: a global assessment for forest-dependent birds

Limited resources are available to address the world's growing environmental problems, requiring conservationists to identify priority sites for action. Using new distribution maps for all of the world's forest-dependent birds (60.6% of all bird species), we quantify the contribution of remaining forest to conserving global avian biodiversity. For each of the world's partly or wholly forested 5-km cells, we estimated an impact score of its contribution to the distribution of all the forest bird species estimated to occur within it, and so is proportional to the impact on the conservation status of the world's forest-dependent birds were the forest it contains lost. The distribution of scores was highly skewed, a very small proportion of cells having scores several orders of magnitude above the global mean. Ecoregions containing the highest values of this score included relatively species-poor islands such as Hawaii and Palau, the relatively species-rich islands of Indonesia and the Philippines, and the megadiverse Atlantic Forests and northern Andes of South America. Ecoregions with high impact scores and high deforestation rates (2000-2005) included montane forests in Cameroon and the Eastern Arc of Tanzania, although deforestation data were not available for all ecoregions. Ecoregions with high impact scores, high rates of recent deforestation and low coverage by the protected area network included Indonesia's Seram rain forests and the moist forests of Trinidad and Tobago. Key sites in these ecoregions represent some of the most urgent priorities for expansion of the global protected areas network to meet Convention on Biological Diversity targets to increase the proportion of land formally protected to 17% by 2020. Areas with high impact scores, rapid deforestation, low protection and high carbon storage values may represent significant opportunities for both biodiversity conservation and climate change mitigation, for example through Reducing Emissions from Deforestation and Forest Degradation (REDD+) initiatives.     

The perils of payoff: corruption as a threat to global biodiversity

Corruption is a worldwide phenomenon, particularly in many developing countries, which contain a large proportion of global biodiversity. Most alarming, from a biodiversity-conservation perspective, is the frequent corruption of government officials who manage valuable natural resources, such as timber, oil and precious minerals. A recent study by Joyotee Smith and colleagues describes rampant corruption in the timber industry of Indonesia, and shifts in the prevalence of different types of corruption as the country has become destabilized politically. By placing corruption into a conceptual framework, Smith et al. provide important insights into how developing nations and their natural resources can be besieged by corruption.     

When rediscovery is not enough: taxonomic uncertainty hinders conservation of a critically endangered bird

In 2003, birds similar to the extinct New Zealand storm-petrel Oceanites maorianus were observed in Hauraki Gulf NZ, raising the possibility of rediscovery after 150 years. O. maorianus has and continues to be surrounded by taxonomic uncertainty, being variously described as a distinct genus, a distinct species, or merely a plumage variant. This uncertainty has hindered conservation planning and funding for the species. Here we examine the taxonomic identity of the rediscovered birds and museum specimens using phylogenetic analysis of mitochondrial (1143 bp cytochrome b) and nuclear (890 bp β-fibrinogen) genes. Using cytochrome b sequence amplified from the 150+ year old specimens, we found that the extant and museum O. maorianus were the same taxon (0.01 genetic distance), with both differing from all other storm-petrel taxa. Using both genes, we examined the phylogenetic affinities of O. maorianus to the Oceanitinae and Hydrobatinae storm-petrels finding that O. maorianus was more closely aligned to Fregetta (0.08-0.09) than Oceanites (0.11-0.12), thereby confirming its status as a distinct taxon, not a plumage variant of O. oceanicus. Our analysis verifies that the previously presumed extinct New Zealand storm-petrel has been rediscovered and can now be assigned a conservation priority commensurate with its critically endangered status.     

Alien and native birds in South Africa: patterns, processes and conservation

The spatial distribution of alien species richness often correlates positively with native species richness, and reflects the role of human density and activity, and primary productivity and habitat heterogeneity, in facilitating the establishment and spread of alien species. Here, we investigate the relationship between the spatial distribution of alien bird species, human density, and anthropogenic and natural environmental conditions. Next, we examined the relationship between the spatial distribution of alien bird species and native bird species richness. We examined alien species richness as a response variable, using correlative analyses that take spatial autocorrelation into account. Further, each alien bird species was examined as a response variable, using logistic regression procedures based on binary presence–absence data. A combination of human density and natural habitat heterogeneity best explained the spatial distribution of alien species richness. This contrasts with the results for individual alien species and with previous studies on other non-native taxa showing the importance of primary productivity and anthropogenic habitat modification as explanatory variables. In general, native species richness is an important correlate of the spatial distribution of alien species richness and individual alien species, with alien species being more similar to common species than to rare species.     

Two sibling species sympatrically breeding: a new conservation concern for the critically endangered Balearic shearwater

Two Puffinus shearwater species are endemic to the Mediterranean region: the Yelkouan shearwater P.␣yelkouan breeding in the central and eastern, and the critically endangered Balearic shearwater P.␣mauretanicus in the western, exclusively breeding at the Balearic archipelago. All individuals caught in Minorca, a Balearic breeding site, showed phenotypic traits of Yelkouan shearwaters. Ten birds from that colony were sampled and genetically analysed. A fragment of 857 base pairs of the cytochrome b was sequenced and compared to published sequences of both species obtained from GenBank. A Neighbor-Joining (NJ) reconstruction distinguished two clades with high bootstrap support, showing that both species bred sympatrically in that colony. This result was unexpected since shearwaters do not usually form mixed colonies. New conservation concerns arise also from our study: at first, breeding population of Yelkouan shearwaters is even smaller than previously thought; additionally, other potential threats emerge, such as hybridization and ecological competition.     

Subpopulation range estimation for conservation planning: a case study of the critically endangered Cross River gorilla

Measuring and characterizing the area utilized by a population or species is essential for assessment of conservation status and for effective allocation of habitat to ensure population persistence. Yet population-level range delineation is complicated by the variety of available techniques coupled with a lack of empirical methods to compare the relative value of these techniques. This study assesses the effect of model choice on resulting subpopulation range estimation for the critically endangered and patchily distributed Cross River gorilla, and evaluates the conservation conclusions that can be drawn from each model. Models considered range from basic traditional approaches (e.g. minimum convex polygon) to newer home range techniques such as local convex hull (LoCoH). Overlap analysis comparing sub-sampled to complete data sets are used to evaluate the robustness of various modeling techniques to data limitations. Likelihood cross validation criterion is employed to compare core range model performance. Results suggest that differing LoCoH models produce similar range estimates, are robust to data requirements, provide a good fit for core habitat estimation, and are best able to detect unused habitat within the subpopulation range. LoCoH methods may thus be useful for studies into habitat selection and factors limiting endangered species distributions. However, LoCoH models tend to over-fit data, and kernel methods may provide similar information about animal space use while supporting protection of larger swaths of critical habitat. Subpopulation range analyses for conservation/management planning should therefore explore multiple modeling techniques, and employ both qualitative and quantitative assessments to select the best models to inform decision making for species of conservation concern.     

High genetic structure of the Cozumel Harvest mice,a critically endangered island endemic: conservation implications

We assessed the genetic structure and diversity of Reithrodontomys spectabilis, a critically endangered, endemic rodent from Cozumel Island, México. A total of 90 individuals were trapped from September 2001 to January 2005. Microsatellite data analysis revealed high genetic diversity values: a total of 113 alleles (average 12.5 per locus), H _o  = 0.78, H _e  = 0.80. These high values can be related to Cozumel’s size (478 km²) and extensive native vegetation cover, factors that could be promoting a suitable population size, high heterozygosity and the persistence of rare alleles in the species, as well as some long-term movement of individuals between sampling localities. A strong genetic structure was also observed, with at least four genetic groups, associated with a pattern of isolation by distance. We found a strong allelic and genetic differentiation shown between localities, with negligible recent gene flow and low inbreeding coefficients. The species life history and ecological characteristics—being nocturnal, semi-terrestrial, a good tree climber, having lunar phobia and significant edge effect—are likely affecting its genetic structure and differentiation. The high genetic diversity and population structure award R. spectabilis a significant conservation value. Our results can serve as a basis for future research and conservation of the species, particularly considering the problems the island is facing from habitat perturbation, urbanization and introduction of exotic species. In view of the structure and genetic variability observed, it is essential to establish and reinforce protected areas and management programs for the conservation of the endemic and endangered Cozumel Harvest mice.     

Autogamous seed set in a critically endangered orchid in Japan: pollination studies for the conservation of Nervilia nipponica

The pollination biology of the critically endangered Nervilia nipponica was investigated at two sites on Shikoku Island, Japan, to shed light on the species' ecological strategy and to help prioritise management decisions for its conservation. Though the solitary flowers failed to attract pollinators, high rates of fruit set were observed in control plants at both sites. Comparable rates were obtained in bagged plants and following induced autogamous and xenogamous pollinations, indicating that the species is capable of outbreeding, but self-compatible and not pollinator-limited for fruit set under natural conditions; rates were significantly lower following emasculation. The number of seeds set per fruit and their fertility did not differ significantly between open-, self- and cross-pollinated treatments. Epifluorescence microscopy revealed that, in open-pollinated plants, pollen grains germinate within the anther on the first day of anthesis, and that fertilisation occurs within the following 96 hours. The position of the stigma, which overlaps the clinandrium, friable pollinia, and the absence of a rostellum ensure efficient, non-mechanical autopollination. Though this confers reproductive assurance, inbreeding depression may be limiting fitness at subsequent stages of the recruitment cycle and low genetic diversity is inferred.     

Nestedness as a conservation tool: plants and birds of oak-hazel woodland in Sweden

Nestedness was examined for vascular plants and birds in the centres and edges of 26 sites of ancient oak-hazel woodland in Sweden. Both taxa exhibited significant nestedness in site centres and for whole sites, but not at the edges for birds. Woodland ranks of nestedness differed between plants and birds. Rank of nestedness of birds, but not of plants, depended on area. Horizontal habitat structure affected nestedness of both plants and birds. Mobility appears decisive for creating rank differences between sites for various taxa. High mobility may also explain a greater edge effect in birds from allochtonous, more or less transient individuals. Nestedness in relation to mobility, particularly at edges, should be of theoretical interest. The possible use of nestedness patterns in conservation makes further analyses urgent for less mobile taxa.     

Genetic diversity and differentiation in the critically endangered orchid (Amitostigma hemipilioides): implications for conservation

Amitostigma hemipilioides is an endangered terrestrial orchid endemic to China. In the Southwestern China, the species is found restricted growing in the karst limestone or rock in the edge of farmland, moist hillsides or river. In the present study, the genetic diversity and differentiation was estimated within and among habitats, populations and groups of this species by ISSR markers. Using 13 polymorphic primers, an intermediate level of genetic diversity was found at the species level and population level with the percentage of polymorphic bands (P) of 64.7 and 50.9 %, Shannon index of diversity (I) of 0.3873 and 0.2949, respectively. The analysis of molecular variance (AMOVA) showed that the high level of population differentiation was presented with 45.63 % relative to the total genetic variation residing among eight populations. It was noteworthy that as much as 69.17 % of the total diversity was most likely attributed to the difference among the populations in fragmentation habitat conditions, while 16.32 % of the total diversity could be attributed to the difference among the populations in stable and favorable habitat conditions. The in situ conservation is a top strategy, thus the mycorrhizal fungi and pollinators are protected by protecting habitat and avoiding fragmentation which is helpful to the cycle of this endangered orchid species and recovery of its wild populations. In addition, to maintaining the germplasm bank of this species, the ex situ conservation by habitat simulation and reintroduction has been considered in the living collection at Kaili University ecological garden and Yuntai Mountain scenic spot using the plants collected in this study.