Pollen and anther characters in monocot systematics

Pollen and anther characters are potentially informative in higher-level systematics of monocotyledons. Several characters of monocot pollen and anthers (tapetum type, microsporogenesis type and inaperturate pollen) are reviewed here in relation to recent phylogenetic concepts of the group, and new data are presented for some critical taxa. The first-branching monocotyledon, Acorus , has a secretory tapetum but most other early branching taxa (i.e., most Alismatales, except Tofieldia ) are plasmodial. The lilioid orders, Pandanales, Dioscoreales, Liliales and Asparagales are almost uniformly secretory. The tapetum is more diverse within the commelinoid clade. Successive microsporogenesis predominates in the monocotyledons although the simultaneous type is of systematic significance within some orders, such as Dioscoreales,Asparagales and Poales. Inaperturate pollen (either "functionally monoaperturate" or "omniaperturate") occurs in every major monocot group. It predominates in Alismatales and Zingiberales, and is a synapomorphy for some Liliales and Asparagales.     

Calcium Oxalate Crystals in Monocotyledons: A Review of their Structure and Systematics

Three main types of calcium oxalate crystal occur in monocotyledons:raphides, styloids and druses, although intermediates are sometimesrecorded. The presence or absence of the different crystal typesmay represent ‘useful’ taxonomic characters. Forinstance, styloids are characteristic of some families of Asparagales,notably Iridaceae, where raphides are entirely absent. The presenceof styloids is therefore a synapomorphy for some families (e.g.Iridaceae) or groups of families (e.g. Philydraceae, Pontederiaceaeand Haemodoraceae). This paper reviews and presents new dataon the occurrence of these crystal types, with respect to currentsystematic investigations on the monocotyledons. Copyright 1999Annals of Botany Company Calcium oxalate, crystals, raphides, styloids, druses, monocotyledons, systematics, development.     

The tapetum and systematics in monocotyledons

This paper critically reviews the homologies and distribution of tapetum types in monocotyledons, in relation to their systematics. Two main types of tapetum are widely recognised: secretory and plasmodial, although intermediate types occur, such as the “invasive” tapetum described inCanna. In secretory tapeta, a layer of cells remains intact around the anther locule, whereas in the plasmodial type a multinucleate tapetal plasmodium is formed in the anther locule by fusion of tapetal protoplasts. In invasive tapeta, the cell walls break down and tapetal protoplasts invade the locule without fusing to form a plasmodium. When examining tapetum type, it is often necessary to dissect several developmental stages of the anthers. Secretory and plasmodial tapeta are both widely distributed in monocotyledons and have probably evolved several times, although there may be some systematic significance within certain groups. Among early branching taxa,Acorus andTofieldia have secretory tapeta, whereas Araceae and Alismatales are uniformly plasmodial. The tapetum is most diverse within Commelinanae, with both secretory and plasmodial types, and some Zingiberales have an invasive tapetum. Lilianae (Dioscoreales, Liliales, and Asparagales) are almost uniformly secretory.     

Triaperturate pollen in the monocotyledons: configurations and conjectures

Triaperturate pollen are known in at least twenty seven genera of monocotyledons. Differences between aperture type and polarity indicate that the development of three apertures has occurred a number of times. Mode of cytokinesis during microsporogenesis is compared with differences in aperture configuration, to assess the extent to which this appears to influence aperture arrangement. Triapertury in monocot pollen tends to fall into one or another of three situations: 1) it is the normal state, 2) it is fairly common, but pollen with more or less apertures also occur in the taxon or sample, 3) it is a rare, or abnormal state for pollen which usually has less than three apertures. The various forms of triaperturate pollen are described, as well as monosulcate pollen of the orchid genera Cypripedium and Paphiopedilum, often misinterpreted as tri-sulcate, and the unusual extended trichotomosulcate pollen of Agrostocrinum (Hemerocallidaceae). Monosulcy, trichotomosulcy, and zonasulcy, with unusual and rare exceptions of zonasulcy in the eudicots, are aperture states shared exclusively with the basal dicots. Furthermore, to some extent all have links with the triaperturate condition in monocots and basal dicotyledons. This is discussed, as well as the association of tripory with polypory in monocots and basal dicots. The fossil pollen record is considered.This paper is dedicated to Klaus Kubitzki in recognition, not only for his extensive contribution to systematic botany, but also for his firm belief that pollen characteristics contribute to a better understanding of plant systematics and evolution.     

Investigation of the Presence of Phenolic Compounds in Monocotyledonous Cell Walls, using UV Fluorescence Microscopy

Harris and Hartley (1976, 1980) demonstrated the presence offerulic acid in cell walls of certain monocotyledons using UVfluorescence microscopy (fluorescing green after treatment withammonium hydroxide solution). The presence or absence of thistype of fluorescence is apparently critical in higher levelsystematics of monocotyledons. In order to evaluate the significanceof this character, cell wall fluorescence was investigated ina range of monocotyledon species, particularly the AustralianXanthorrhoeaceae sensu lato (Bedford et al., 1986), which werenot investigated in earlier studies. This family is widely regardedas polyphyletic and was divided into several families by Dahlgren,Clifford and Yeo (1985). Some of its constituent genera, suchas Dasypogon, Kingia and Calectasia, have been linked with bothcommelinoid and non-commelinoid monocotyledons, and are of obscureaffinity. Some genera of Xanthorrhoeaceae sensu lato (Baxteria,Calectasia, Dasypogon and Kingia) show this type of green cellwall fluorescence and may therefore be more closely linked withthe commelinoid monocotyledons, rather than the Lilianae-Asparagales,as previously placed (Dahlgren et al., 1985).Copyright 1994,1999 Academic Press Asparagales, Dasypogonaceae, fluorescence, Hanguana, monocotyledons, systematics, Xanthorrhoeaceae     

Endosperm development in the Araceae (Alismatales) and evolution of developmental modes in monocots

The Araceae, a basal-most family of Alismatales that basally diverged subsequent to Acorales in monocot phylogeny, are known to have diverse modes of endosperm development: nuclear, helobial, and cellular. However, the occurrence of nuclear and helobial endosperm development has long been debated. Here, we report a (re-)investigation of endosperm development in Lysichiton, Orontium, and Symplocarpus of the Orontioideae (a basal Araceae), in which nuclear endosperm development was recorded more than 100 years ago. The results show that all three genera exhibit a cellular, rather than nuclear, endosperm development and suggest that the helobial endosperm development reported as an “unmistakable record” from Ariopsis is likely cellular. Thus the Araceae are very likely characterized by cellular endosperm development alone. An extensive comparison with other monocots in light of phylogenetic relationships demonstrates that a plesiomorphic cellular endosperm development is restricted to the three basal monocot orders Acorales, Alismatales, and Petrosaviales, in which evolutionary changes from cellular to nuclear endosperm development occurred twice as major events, once within Alismatales and once as a synapomorphy of the eight remaining monocot orders, including Dioscoreales, Liliales, Asparagales, and Poales, and that helobial endosperm development, which is known for many monocot families, evolved as homoplasy throughout the monocots.     

A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales

Enormous genomic resources have been developed for plants in the monocot order Poales; however, it is not clear how representative the Poales are for the monocots as a whole. The Asparagales are a monophyletic order sister to the lineage carrying the Poales and possess economically important plants such as asparagus, garlic, and onion. To assess the genomic differences between the Asparagales and Poales, we generated 11,008 unique ESTs from a normalized cDNA library of onion. Sequence analyses of these ESTs revealed microsatellite markers, single nucleotide polymorphisms, and homologs of transposable elements. Mean nucleotide similarity between rice and the Asparagales was 78% across coding regions. Expressed sequence and genomic comparisons revealed strong differences between the Asparagales and Poales for codon usage and mean GC content, GC distribution, and relative GC content at each codon position, indicating that genomic characteristics are not uniform across the monocots. The Asparagales were more similar to eudicots than to the Poales for these genomic characteristics.     

Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice

The Poales (includes the grasses) and Asparagales [includes onion (Allium cepa L.) and asparagus (Asparagus officinalis L.)] are the two most economically important monocot orders. The Poales are a member of the commelinoid monocots, a group of orders sister to the Asparagales. Comparative genomic analyses have revealed a high degree of synteny among the grasses; however, it is not known if this synteny extends to other major monocot groups such as the Asparagales. Although we previously reported no evidence for synteny at the recombinational level between onion and rice, microsynteny may exist across shorter genomic regions in the grasses and Asparagales. We sequenced nine asparagus BACs to reveal physically linked genic-like sequences and determined their most similar positions in the onion and rice genomes. Four of the asparagus BACs were selected using molecular markers tightly linked to the sex-determining M locus on chromosome 5 of asparagus. These BACs possessed only two putative coding regions and had long tracts of degenerated retroviral elements and transposons. Five asparagus BACs were selected after hybridization of three onion cDNAs that mapped to three different onion chromosomes. Genic-like sequences that were physically linked on the cDNA-selected BACs or genetically linked on the M-linked BACs showed significant similarities (e < −20) to expressed sequences on different rice chromosomes, revealing no evidence for microsynteny between asparagus and rice across these regions. Genic-like sequences that were linked in asparagus were used to identify highly similar (e < −20) expressed sequence tags (ESTs) of onion. These onion ESTs mapped to different onion chromosomes and no relationship was observed between physical or genetic linkages in asparagus and genetic linkages in onion. These results further indicate that synteny among grass genomes does not extend to a sister order in the monocots and that asparagus may not be an appropriate smaller genome model for plants in the Asparagales with enormous nuclear genomes.     

Triporate pollen in the Arecaceae

Triapertury is rare in monocotyledons. The well-defined, regularly spaced, circular porate apertures that occur in Arecaceae: Areca klingkangensis from Borneo, and species of the West African genus Sclerosperma, appear to be unique in monocotyledons. There is evidence to suggest that tripory in Arecaceae has been derived from trichotomosulcy, although in Areca equatorial zonosulcy may have an important role. The apical triporate, and zonosulcate pollen of Areca are described, as well as examples of mono- and trichotomosulcate pollen within the genus. The sub-apical distal triporate pollen of Sclerosperma gilletii and S. mannii are described. Notably, in Sclerosperma pollen, aperture position at post-meiotic tetrad stage follows the rare ‘Garside's rule’ (four groups of three apertures), previously only demonstrated for Proteaceae and Olacaceae. Possible reasons for the occurrence of these rare triporate pollen phenomena in palms are considered. The bearing this may have on the transition from the distal polar position of the single sulcus, to the radial symmetry of the triaperturate condition in many dicotyledons is discussed in comparison with other examples of triapertury in monocotyledons.     

A Phylogenetic Analysis of the Plastid matK Gene with Emphasis on Melanthiaceae sensu lato

Abstract: The presented mat K tree primarily agrees well with the previously presented rbc L tree and combined rbc L + atp B + 18SrDNA tree. According to the mat K tree, the monocotyledons are monophyletic with 100 % bootstrap support. Acorus diverges first from all other monocotyledons (90 % bootstrap support) in which two major clades are recognized: one (89 %) consisting of Alismatanae and Tofieldia (Nartheciaceae), and the other (< 50 %) comprising Lilianae, Commelinanae and Nartheciaceae other than Tofieldia. Within the latter major clade, Petrosavia and Japonolirion (Nartheciaceae) (82 %) diverge first from the remaining taxa (< 50 %) in which two clades are formed: one (81 %) consisting of Pandanales, Dioscoreales and Nartheciaceae-Narthecioideae, and the other (< 50 %) comprising Liliales, Asparagales and Commelinanae. In the former clade, Dioscoreales and Narthecioideae are grouped together (88 %). In the latter clade, Asparagales and Commelinanae are grouped together (< 50 %). Differences between the mat K and rbc L tree topologies appear in the positions of Tricyrtis (Calochortaceae) and Dracaenaceae. Differences between the mat K and combined rbc L + atp B + 18SrDNA tree topologies exist in the positions of the Petrosavia-Japonolirion pair (Nartheciaceae) and Pandanales. The stop codon position of the mat K gene appears to be highly variable among the monocotyledons, especially in the Liliales.     

单子叶植物高级分类阶元系统演化: matK、rbcL和18S rDNA序列的证据

基于两个叶绿体基因（matK和rbcL）和一个核糖体基因（18S rDNA）的序列分析,对代表了基部被子植物和单子叶植物主要谱系分支的86科126属151种被子植物（单子叶植物58科86属101种）进行了系统演化关系分析。研究结果表明由胡椒目Piperales、樟目Laurales、木兰目Magnoliales和林仙目Canellales构成的真木兰类复合群是单子叶植物的姐妹群。单子叶植物的单系性在3个序列联合分析中得到98％的强烈自展支持。联合分析鉴定出9个单子叶植物主要谱系（广义泽泻目Alismatales、薯蓣目Dioscorcales、露兜树目Pandanales、天门冬目Asparagalcs、百合目Liliales、棕榈目Arecales、禾本目Poales、姜目Zingiberales、鸭跖草目Commelinales）和6个其他被子植物主要谱系（睡莲目Nymphaeales、真双子叶植物、木兰目、樟目、胡椒目、林仙目）。在单子叶植物内,菖蒲目Acorales（菖蒲属Acorus）是单子叶植物最早分化的一个谱系,广义泽泻目（包括天南星科Araceae和岩菖蒲科Toficldiaccae）紧随其后分化出来,二者依次和其余单子叶植物类群构成姐妹群关系。无叶莲科Petrosaviaceac紧随广义的泽泻目之后分化出来,无叶莲科和剩余的单子叶植物类群形成姐妹群关系,并得到了较高的支持率。继无叶莲科之后分化的类群形成两个大的分支：一支是由露兜树目和薯蓣目构成,二者形成姐妹群关系：另一支是由天门冬目、百合目和鸭跖草类复合群组成,三者之间的关系在单个序列分析和联合分析中不稳定,需要进一步扩大取样范围来确定。在鸭跖草类复合群分支内,鸭跖草目和姜目的姐妹群关系在3个序列联合分析和2个序列联合分析的严格一致树中均得到强烈的自展支持,获得的支持率均是100％。但是,对于棕榈目和禾本目在鸭跖草类中的系统位置以及它们和鸭跖草目-姜目之间的关系,有待进一步解决。值得注意的是,无叶莲科与其他单子叶植物类群（除菖蒲目和泽泻目外）的系统关系在本文中获得较高的自展支持率,薯蓣目和天门冬目的单系性在序列联合分析中都得到了较好的自展支持,而这些在以往的研究中通常支持率较低。鉴于菖蒲科和无叶莲科独特的系统演化位置,本文支持将其分别独立成菖蒲目和无叶莲目Petrosavialcs的分类学界定。     

Multiple developmental pathways leading to a single morph: monosulcate pollen (examples from the Asparagales)

BACKGROUND AND AIMS: Early developmental events in microsporogenesis are known to play a role in pollen morphology: variation in cytokinesis type, cell wall formation, tetrad shape and aperture polarity are responsible for pollen aperture patterning. Despite the existence of other morphologies, monosulcate pollen is one of the most common aperture types in monocots, and is also considered as the ancestral condition in this group. It is known to occur from either a successive or a simultaneous cytokinesis. In the present study, the developmental sequence of microsporogenesis is investigated in several species of Asparagales that produce such monosulcate pollen, representing most families of this important monocot clade. METHODS: The developmental pathway of microsporogenesis was investigated using light transmission and epifluorescence microscopy for all species studied. Confocal microscopy was used to confirm centripetal cell plate formation. KEY RESULTS: Microsporogenesis is diverse in Asparagales, and most variation is generally found between families. It is confirmed that the whole higher Asparagales clade has a very conserved microsporogenesis, with a successive cytokinesis and centrifugal cell plate formation. Centripetal cell wall formation is described in Tecophilaeaceae and Iridaceae, a feature that had so far only been reported for eudicots. CONCLUSIONS: Monosulcate pollen can be obtained from several developmental pathways, leading thus to homoplasy in the monosulcate character state. Monosulcate pollen should not therefore be considered as the ancestral state unless it is produced through the ancestral developmental pathway. The question about the ancestral developmental pathway leading to monosulcy remains open.     

Systematic root anatomy of Asparagales and other monocotyledons

Root anatomy of several taxa of Asparagales and some taxa formerly included in Asparagales is described in a systematic context together with a literature review. The presence of a dimorphic outer layer with long and short cells is widespread in monocotyledons, indicating that it originated early in the monocot lineage, but whereas this layer is rhizodermal in most monocotyledons, in Asparagales and Araceae it is usually hypodermal. There may be a correlation between the presence of a velamen or a persistent rhizodermis in many Asparagales and Araceae and the presence of a dimorphic hypodermal layer. Many other root anatomical characters, such as the presence of vascular bundles in the central pith and a multi-layered sclerenchymatous cylinder, are probably xeromorphic and developed convergently.     

Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity

The Poales (which include the grasses) and Asparagales [which include onion (Allium cepa L.) and other Allium species] are the two most economically important monocot orders. Enormous genomic resources have been developed for the grasses; however, their applicability to other major monocot groups, such as the Asparagales, is unclear. Expressed sequence tags (ESTs) from onion that showed significant similarities (80% similarity over at least 70% of the sequence) to single positions in the rice genome were selected. One hundred new genetic markers developed from these ESTs were added to the intraspecific map derived from the BYG15-23×AC43 segregating family, producing 14 linkage groups encompassing 1,907 cM at LOD 4. Onion linkage groups were assigned to chromosomes using alien addition lines of Allium fistulosum L. carrying single onion chromosomes. Visual comparisons of genetic linkage in onion with physical linkage in rice revealed scant colinearity; however, short regions of colinearity could be identified. Our results demonstrate that the grasses may not be appropriate genomic models for other major monocot groups such as the Asparagales; this will make it necessary to develop genomic resources for these important plants. Electronic Supplementary Material Supplementary material is available for this article at     

Molecular phylogeny of monocotyledons inferred from combined analysis of plastid<Emphasis Type="Italic"> matK</Emphasis> and<Emphasis Type="Italic"> rbcL</Emphasis> gene sequences

Using matK and rbcL sequences (3,269 bp in total) from 113 genera of 45 families, we conducted a combined analysis to contribute to the understanding of major evolutionary relationships in the monocotyledons. Trees resulting from the parsimony analysis are similar to those generated by earlier single or multiple gene analyses, but their strict consensus tree provides much better resolution of relationships among major clades. We find that Acorus (Acorales) is a sister group to the rest of the monocots, which receives 100% bootstrap support. A clade comprising Alismatales is diverged as the next branch, followed successively by Petrosaviaceae, the Dioscoreales–Pandanales clade, Liliales, Asparagales and commelinoids. All of these clades are strongly supported (with more than 90% bootstrap support). The sister-group relationship is also strongly supported between Alismatales and the remaining monocots (except for Acorus) (100%), between Petrosaviaceae and the remaining monocots (except for Acorus and Alismatales) (100%), between the clade comprising Dioscoreales and Pandanales and the clade comprising Liliales, Asparagales and commelinoids (87%), and between Liliales and the Asparagales–commelinoids clade (89%). Only the sister-group relationship between Asparagales and commelinoids is weakly supported (68%). Results also support the inclusion of Petrosaviaceae in its own order Petrosaviales, Nartheciaceae in Dioscoreales and Hanguanaceae in Commelinales.Electronic Supplementary Material Supplementary material is available in the online version of this article at http://dx.doi.org/10.1007/s10265-003-0133-3     

Microsporogenesis is simultaneous in the early‐divergent grass Streptochaeta,but successive in the closest grass relative,Ecdeiocolea

Simultaneous microsporogenesis is described for the first time in a grass, Streptochaeta spicata Schrad., a tropical Brazilian species that belongs in the early‐divergent subfamily Anomochlooideae. Microsporogenesis is successive in all other Poaceae examined so far, and most other members of the order Poales, to which grasses belong. The only other reports of simultaneous microsporogenesis in Poales are in Rapateaceae and some members of the cyperid clade (Juncaceae, Cyperaceae, Prionium and Thurnia). Among the graminids, Ecdeiocolea (the putative closest relative to Poaceae) is successive, as are Joinvillea, Flagellaria and all other Poaceae, indicating that the simultaneous condition is autapomorphic in Streptochaeta, though Anomochloa has yet to be examined. Anther wall development in Streptochaeta is of the reduced type, as also in another early‐divergent grass Pharus, though most other Poales, including most grasses, have the monocot type. In Streptochaeta, as in Pharus, the endothecium lacks thickenings, unlike other grasses that have a persistent endothecium with thickenings. The centrifixed anthers and nonplumose stigmas of Streptochaeta suggest entomophily.     

Successive microsporogenesis in eudicots, with particular reference to Berberidaceae (Ranunculales)

The eudicot clade of angiosperms is characterised by simultaneous microsporogenesis and tricolpate pollen apertures. Successive microsporogenesis, where a distinct dyad stage occurs after the first meiotic division, is relatively rare in eudicots although it occurs in many early branching angiosperms including monocots. An extensive literature survey shows that successive microsporogenesis has arisen independently at least six times in eudicots, in five different orders, including Berberidaceae (Ranunculales). Microsporogenesis and pollen apertures were examined here using light and transmission electron microscopy in eleven species representing six genera of Berberidaceae. Successive microsporogenesis is a synapomorphy for the sister taxa Berberis and Mahonia (and possibly also Ranzania), the remaining genera are simultaneous. Callose wall formation in Berberis and Mahonia is achieved by centripetal furrowing, though centrifugal cell plates are more usual for this microsporogenesis type. This discrepancy could reflect the fact that the successive type in Berberidaceae is derived from the simultaneous type, and centripetal furrowing has been retained. Eudicots with successive microsporogenesis usually produce tetragonal or decussate tetrads, though occasional tetrahedral or irregular tetrads in Berberis and Mahonia indicate that the switch from simultaneous to successive division is incomplete or “leaky”. In contrast, linear tetrads produced by successive microsporogenesis in Asclepiadoideae (Apocynaceae s.l.) are the result of a highly specialised developmental pathway leading to the production of pollinia. Pollen in successive eudicots is dispersed as monads, dyads, tetrads, and as single grains in pollinia. Apertures are diverse, and patterns include spiraperturate, clypeate, irregular, monocolpate, diporate and inaperturate. It is possible that successive microsporogenesis, although rare, potentially occurs in other eudicots, for example, in species where pollen is inaperturate.     

The Microfibrillar Component of the Pollen Intine Some Structural Features

The microfibrillar polysaccharide component of the pollen intinecan be isolated by progressive chemical digestion of the exineand the cellular contents and the extraction of the matrix materials.The resulting intine ‘ghosts’ reveal various characteristicstructural features. The microfibrils have apparent individualdiameters in the range of 5–15 nm, but they are commonlyassociated laterally to form ribbons, or aggregated in strandsor cables of dimensions great enough to be resolved with theoptical microscope. These often show preferred orientations,which can be associated with pollen grain shape and with thedisposition-of the germination apertures. The apertural intinemay be structurally complex, as in Abutilon hybridum, where,after the removal of the exine, the polysaccharide caps whichoverlie the protein storage sites of the pollen grain wall retainthe elaborate patterning of the original cytoplasmic evaginationsfrom the vegetative cell. Secale cereale, Narcissus pseudonarcissus, Abutilon hybridum, Crocus vernus, pollen grain, intine, exine, wall pattern, germination apertures, polysaccharide microfibrils, fluorescence microscopy     

Phylogenetics of Asphodelaceae (Asparagales): An Analysis of Plastid rbcL and trnL-F DNA Sequences

Phylogenetic relationships of Asphodelaceae were investigatedby parsimony analysis of 57 monocotrbcL nucleotide sequences,including 17 genera that have at some time been assigned tothe family. All genera of Asphodelaceae except for three (Hemiphylacus,Paradisea and Simethis) form a strongly supported monophyleticgroup with Hemerocallidaceae and Xanthorrhoeaceae as their immediatesister taxa. In a second analysis, we added 34 plastid trnL-Fsequences (an intron and a spacer between two transfer RNA genes)for the Asphodelaceae clade and nearest outgroup families (Doryanthaceae,Hemerocallidaceae, Iridaceae, Ixioliriaceae, Tecophilaeaceaeand Xanthorrhoeaceae) in an attempt to improve resolution andlevels of internal support. The results from the separate analysesproduced highly similar although not identical results. No stronglysupported incongruent groups occurred, and we combined bothsequence regions in one analysis, which demonstrated improvedresults. Strong support exists for a monophyletic subfamilyAlooideae, but this leaves a paraphyletic subfamily Asphodeloideaebecause Bulbine/Jodrellia alone are strongly supported as thesister group of Alooideae. Characters that have been used toseparate Alooideae as a distinct group (either as here a subfamilyor as a separate family by other authors), such as secondarygrowth and bimodal karyotypes, are found in at least some membersof Asphodeloideae, particularly in Bulbine and Jodrellia forthe karyotypes, making Alooideae less easily recognized. Copyright2000 Annals of Botany Company Alooideae, Asphodeloideae, Asphodelaceae, Asparagales, phylogenetic analysis, rbcL, trnL-F, molecular systematics     

Random BAC FISH of monocot plants reveals differential distribution of repetitive DNA elements in small and large chromosome species

BAC FISH (fluorescence in situ hybridization using bacterial artificial chromosome probes) is a useful cytogenetic technique for physical mapping, chromosome marker screening, and comparative genomics. As a large genomic fragment with repetitive sequences is inserted in each BAC clone, random BAC FISH without adding competitive DNA can unveil complex chromosome organization of the repetitive elements in plants. Here we performed the comparative analysis of the random BAC FISH in monocot plants including species having small chromosomes (rice and asparagus) and those having large chromosomes (hexaploid wheat, onion, and spider lily) in order to understand a whole view of the repetitive element organization in Poales and Asparagales monocots. More unique and less dense dispersed signals of BAC FISH were observed in species with smaller chromosomes in both the Poales and Asparagales species. In the case of large-chromosome species, 75-85% of the BAC clones were detected as dispersed repetitive FISH signals along entire chromosomes. The BAC FISH of Lycoris did not even show localized repetitive patterns (e.g., centromeric localization) of signals.