DNA replication of a polytene chromosome section in Drosophila prior to and during puffing

Polytene chromosome sections 63E1-6 of 3L in Drosophila melanogaster were studied by ³H-uridine and ³H-thymidine autoradiography in late third instar larvae and prepupae. In late third instar larvae 63E does not incorporate ³H-uridine. In prepupae, however, a large puff is formed in 63E which is most active in RNA synthesis. — ³H-thymidine labeling patterns and frequencies of regions 61A-64C were analysed and the non-puffed and puffed 63E sections were compared with reference sections. Both in late third instar larvae and in prepupae 63E shows late replication behavior. It is concluded that the decondensation of chromosome bands does not necessarily entail earlier and/or faster DNA replication.     

Correspondence of banding patterns to 3H-thymidine labeling patterns in polytene chromosomes

³H-thymidine labeling frequencies over X chromosomal region 1A-4E of Drosophila melanogaster, were analysed with reference to chromosome sections with and without prominent bands. A correspondence was found between band sections and late start of silver grain labeling at the initial stage in combination with late labeling at the end stage of replication. A complementary situation is always to be found over puff/interband sections, where an early start of labeling at the initial stage is generally combined with early labeling completion at the end stage of replication.     

Radioautography of incorporated 3H-thymidine and its metabolism during meiotic prophase in microsporocytes of Lilium

Zygotene cells of Lilium were cultured in the presence of ³H-thymidine for 24 hours and the culture continued in isotope-free medium. Radioautographs of the cells at subsequent stages of meiosis showed the zygotene label to be chromosomal and to be more or less generally distributed over all the chromosomes. Exposure of cells to ³H-thymidine for periods longer than 24 hours resulted in widespread incorporation of thymidine catabolites into a variety of acid-insoluble compounds. Such catabolism is characteristic of meiotic prophase and is virtually absent at premeiotic interphase.This work was supported by a grant from the National Science Foundation, GB 29562 and the Ministry of Education of Japan.     

Autoradiographic detection of the uptake of the label from bacterial3H-DNA in relation to the kinetics of the mitotic cycle in barley embryos

Extirped barley embryos were pre-cultivated in aerated liquid nutrient solution for 24 h and then cultivated for 6 h in nutrient solution containing either³H-DNA fromBacillus subtilis or³H-thymidine. After this treatment the embryos were thoroughly washed and transferred to the fresh nutrient medium. Samples were fixed at different intervals up to 24 h. Feulgen squashes were made and covered with autoradiographic emulsion. Microautodiagrams of different parts of the embryos (root meristem, shoot apex plus meristem of the third leaf, second leaf meristem, coleoptile, scutelum) were observed. Labelling of the nuclei after the application of both³H-DNA and³H-thymidine was found in the proliferating parts of the embryos but no label was found in the scutelum. The labelling index values were almost similar in different embryo organs after the treatment with³H-DNA and³H-thymidine. Labelling index and the fraction of labelled mitoses at different intervals after the application of the labelled substances were almost similar after treatment with³H-DNA and³H-thymidine, except some variations due to irrelevant differences in the kinetics of the mitotic cycle. No disappearance of the activity of³H-DNA was observed at different intervals after removal from the labelled solutions during cultivation for other 24 h in non-labelled nutrient medium either containing DNA fromBacillus subtilis or without it. The embryos which were immersed into 0.2% NaCl solution with either one of the labelled compounds did not show any initiation of the S phase nor uptake of³H-DNA. All these results demonstrate that the label from³H-DNA is localized in those cell nuclei which were in the S phase during treatment but they do not yet distinguish unambiguously between the adsorbtion of polymerous DNA or its degradation and reutilization of low-molecular weight products.     

The genetics of dopa decarboxylase in Drosophila melanogaster

Of 204 mutations located in the 8–12 band Df(2L)130 region, 37B9-C1,2;37D1-2, 199 have been assigned to twelve lethal genes and one visible gene (hook). The 13 genes are not evenly distributed. Twelve, (possibly all thirteen) are in the seven band region 37B10-C4 giving a gene-to-band ratio of almost two. Only one gene, 1(2)37Cf, may be in the four band region 37C5-7, and none are localized in band 37D1. In situ hybridization places the dopa decarboxylase structural gene, Ddc, in or very close to band 37C1,2 (Hirsh and Davidson, 1981). The methyl dopa hypersensitive gene, 1(2) amd, is 0.002 map units distal to Ddc. Df(2L)VA17, 37C1,2; 37F5-38A1 may actually break in the 37C1,2 singlet. It places six genes, hook, 1(2)amd, and four lethal genes, in a maximum of five bands, 37B10, 11, 12, 13 and perhaps part of the 37C1,2 singlet and localizes six genes, Ddc plus five lethal genes, in a maximum of three bands; probably part of the 37C1,2 singlet plus bands, C3, and C4. Wild type activity of five of twelve lethal genes is necessary for female fertility. — Band 37C5 puffs at the time of pupariation; Puff Stages 8–10. Twelve of eighteen alleles of 1(2)37Cf havs been examined as heterozygotes over CyO and none affect the appearance of a homozygous 37C5 puff. — Of the 204 mutations considered here only one Ddc ^p1, affects the function of more than one gene. It eliminates Ddc ⁺ and l(2) 37Ca ⁺ function and at 30 ° C reduces l(2)37Ce ⁺ function. It is not a deficiency but could be a polar mutant.Prof. Beermann's co-authors are very pleased to dedicate this paper to him in honor of his sixtieth birthday and in recognition of his seminal, most significant, extensive, and authoritive contributions on the functional organization of chromosomes     

Pitfalls, artefacts and open questions in chlorophyll thermoluminescence of leaves or algal cells

Thermoluminescence of intact photosynthetic organisms, leaves or algal cells, raises specific problems. The constitutive S_2/3Q _B ^? B bands constitute major probes of the state of photosystem II in vivo. The presence of a dark-stable acidic lumen causes a temperature downshift of B bands, specially the S₃ B band, providing a lumen pH indicator. This is accompanied by a broadening of the S₃ B band that becomes an envelope of elementary B bands. The occasional A_T, Q and C bands are briefly examined in an in vivo context. It is emphasized that freezing below the nucleation temperature is not necessary for physiological studies, but a source of artefacts, hence should be avoided. In intact photosynthetic structures, a dark-electron transfer from stroma reductants to the quinonic acceptors of photosystem II via the cyclic/chlororespiratory pathways, strongly stimulated by moderate warming, gives rise to the afterglow (AG) luminescence emission that reflects chloroplast energy status. The decomposition of complex TL signals into elementary bands is necessary to determine the maximum temperature T _m and the area of each of them. A comparison of TL signals after 1 flash and 2 flashes prevents from confusing the three main bands observed in vivo, i.e. the S₂ and S₃ B bands and the AG band. Finally, the thermoluminescence bands arising sometimes above 50 °C are mentioned. The basic principles of (thermo)luminescence established on isolated thylakoids should not be applied directly without a careful examination of in vivo conditions.     

Functional heterogeneity among peritoneal macrophages. II. Enzyme content of macrophage subpopulations.

Rabbit peritoneal exudate (PE) macrophages were separated into subpopulations on discontinuous density gradients of bovine serum albumin. Four such macrophage subpopulations, referred to as bands A, B, C, and D (from lightest to heaviest buoyant density), were examined for differences in enzyme content. With regard to three acid hydrolases—acid phosphatases, β-glucuronidase, and cathepsin D—cells in bands A and B had greater enzyme activity than cells in bands C and D. A similar distribution of activities was observed for acid p-nitrophenylphosphatase. Peroxidase activity was present only in band D. Lysozyme activity was greatest in band D cells and least in band A cells. Only small differences in cytochrome c oxidase activity were observed among the subpopulations. Arginase activity was found to be greater in cells from band A than cells in bands B, C, and D. Macrophage subpopulations derived from PE macrophages placed in tissue culture for 7 days and macrophage subpopulation cells cultured for 2 days showed differences in acid phosphatase content similar to those seen with freshly obtained subpopulations. These results extend previous work demonstrating heterogeneity among PE macrophages.     

The effects of pyridine nucleotides on the activity of a calcium-activated nonselective cation channel in the rat insulinoma cell line,CRI-G1

The activity of a calcium-activated nonselective (Ca-NS⁺) channel in a rat insulinoma cell line (CRI-G1) is inhibited by pyridine nucleotides in excised patches. The effects of all four pyridine nucleotides tested, -NAD⁺, -NADH, -NADP⁺ and -NADPH were very similar when tested at 0.1 mm, and at 1 mm the phosphorylated forms, -NADP⁺ and -NADPH, appeared to be slightly more potent than -NAD⁺ and -NADH. All the pyridine nucleotides tested reduced both the open state probability of the channel and the number of functional channels observed in a single patch.The application of -NAD⁺, but not of the other nucleotides tested, to the cytoplasmic surface of isolated inside-out patches from CRI-G1 cells opened a novel nonselective cation channel (the -NAD⁺-NS⁺ channel). The activity of this new channel is calcium sensitive and may also be inhibited by AMP.     

Polytene chromosome structure at the submicroscopic level

Electron microscopic observations on sections of squashed glutar-aldehyde-fixed salivary gland X-chromosomes ofDrosophila melanogaster provided an ultrastructural map of the band sequence of region 1A1 to 4E3. Comparison of this map with the map of Bridges (1938) revealed a significantly lower number of bands. Only 67% of the bands depicted in Bridges' map could be identified. This discrepancy seems to be a consequence mainly of the absence of doublet characters of bands on Bridges' map. — A possible relationship between bands and genes is discussed for some regions, including the white-Notch region. It appears that a one to one relationship between bands and genes does exist for two regions, whereas in region 3C1–3C7 more genes than bands are present. In this respect the structural organization of bands at the submicroscopic level is discussed. — The average DNA content of a band at the haploid level is calculated on the basis of the reduction in band number to be 4.5 × 10^?5 picogram.     

The role of transmembrane electrochemical potential and phosphorylation of PS II proteins in temperature induced light emission from ATP-treated lettuce thylakoids

Changes in characteristics of flash-induced thermoluminescence (TL) glow curves in thylakoids of lettuce following incubation of the organelles with ATP, under illumination or in the dark, were investigated. TL bands were induced by 1 or 2 flashes fired at –10°C or 1°C in thylakoids: TL curves in control thylakoids which were dark-adapted or submitted to an illumination without ATP, can be deconvoluted as the sum of one single B band and minor contributions. In thylakoids incubated for 90 s with 0.5 mM ATP, either under light or in the dark (after a 90 s preillumination), bands presented complex shapes; after deconvolution, they appeared composed of a B band with a low Ea (activation energy): 0.6 e.v. as compared to 0.75 in control, and a supplementary band peaking at about 10°C. The band at low temperature was suppressed by low concentrations (10–20 nM) of valinomycin, nigericin or FCCP as well as by 10 mM ammonium chloride, leaving B bands with the same characteristics as in control material. Finally with higher nigericin concentrations, the bands became single B bands with high Ea (0.9 e.v.). These characteristics would define 3 different energized states (in the form of a transmembrane electrochemical potential) for thylakoids based upon the presence of the 10°C band and the value of the activation energy for the B band component. The presence of a large 10°C band was also correlated to the existence of a larger transmembrane pH gradient, in the dark, after an ATP-treatment, than in controls. The 10°C band was specifically suppressed by the action of low concentrations of alkaline phosphatase with minor changes in characteristics of the remaining B band suggesting that phosphorylation of PS II proteins is also involved in the appearance of this low temperature band. The main mechanism at the origin of the low temperature band would be a destabilization of S_2/3Q_B ^– charge pairs in energized membranes.     

Autoradiographic detection of uptake of bacterial3H-DNA label by barley seeds and isolated barley embryos

Barley seeds and extirpated embryos were cultivated in³H-DNA fromBacillus subtilis. Control group of embryos was cultivated in³H-thymidine. Uptake of the label from³H-DNA was observed after both methods of application, to halves of seeds and to embryos, and the label was localized almost exclusively in some of the nuclei of meristematic cells.     

Satellite DNA associated with heterochromatin in Rhynchosciara

The DNA of Rhynchosciara hollaenderi was examined using isopycnic centrifugation in neutral CsCl. Two low density minor bands (collectively termed satellite DNA) were detected in addition to the main band DNA. Main band DNA has a buoyant density of 1.695 g/cm³. The larger of the two minor bands has a buoyant density of 1.680 g/cm³ while the smaller of the two minor bands has a buoyant density of about 1.675 g/cm³. Thermal denaturation studies have confirmed the presence of the two minor classes of DNA.—The satellite and main band DNAs were isolated in relatively pure form and were transcribed in vitro using DNA-dependent RNA polymerase from Escherichia coli. Annealing of the two complementary RNAs (cRNAs) with main band and satellite DNA was examined using filter hybridization techniques.—The chromosomal distribution of the satellite DNA was determined by in situ molecular hybridization of satellite-cRNA with Rhynchosciara salivary gland chromosomes. Satellite-cRNA hybridized with the centromeric heterochromatin of each of the four chromosomes (A, B, C, and X) and with certain densely staining bands in the telomere regions of the A and C chromosomes. Main band-cRNA annealed with many loci scattered throughout the chromosomes including areas containing satellite DNA.     

Acetylation of histones of rat testis.

When [1-¹⁴C]acetate was injected into rats intratesticularly in the presence of cycloheximide to inhibit protein synthesis, the label was incorporated into histone fractions F2a1 and F3 and into non-histone chromosomal proteins of each of the following stages of spermatogenesis: spermatogonia-preleptotene spermatocytes, leptotene-zygotene-pachytene-diplotene primary spermatocytes, and spermatids. Acetylation of histones was particularly active in the spermatid stages. There was no significant incorporation of acetate into the lysine-rich histone fractions F1 and X₁.In early periods of in vivo incorporation of [³H]amino acids into histones the acetylated histone F2a1 fractions had higher specific activities than the main band of F2a1, but with the passage of time the label moved into the principal band to the extent that specific activities in the acetylated and principal bands were approximately equal at 6 days. However, at 24–36 days the specific activities were again higher in the acetylated bands than in the principal band of F2a1. These data support the conclusions of Candido, Louie, and Dixon, from experiments with trout testis, that acetylation of histone F2a1 may be important in the process of combination of this protein with DNA in chromatin at the spermatogonia-primary spermatocyte stage and also in the subsequent removal of this histone for replacement by protamines at the spermatid stage.[³H]Amino acids were incorporated into histone fractions X₁ and F1 at approximately equal rates, and there was no evidence that one of these fractions was a precursor of the other.Chromatin of the seminiferous epithelial cells of rat testis has a firmly bound acetylase which catalyzes the in vitro acetylation of histones F3 and F2a1 by acetyl CoA.     

The Coxsackievirus-Adenovirus Receptor Protein Can Function as a Cellular Attachment Protein for Adenovirus Serotypes from Subgroups A, C, D, E, and F

Attachment of an adenovirus (Ad) to a cell is mediated by the capsid fiber protein. To date, only the cellular fiber receptor for subgroup C serotypes 2 and 5, the so-called coxsackievirus-adenovirus receptor (CAR) protein, has been identified and cloned. Previous data suggested that the fiber of the subgroup D serotype Ad9 also recognizes CAR, since Ad9 and Ad2 fiber knobs cross-blocked each other’s cellular binding. Recombinant fiber knobs and ³H-labeled Ad virions from serotypes representing all six subgroups (A to F) were used to determine whether the knobs cross-blocked the binding of virions from different subgroups. With the exception of subgroup B, all subgroup representatives cross-competed, suggesting that they use CAR as a cellular fiber receptor as well. This result was confirmed by showing that CAR, produced in a soluble recombinant form (sCAR), bound to nitrocellulose-immobilized virions from the different subgroups except subgroup B. Similar results were found for blotted fiber knob proteins. The subgroup F virus Ad41 has both short and long fibers, but only the long fiber bound sCAR. The sCAR protein blocked the attachment of all virus serotypes that bound CAR. Moreover, CHO cells expressing human CAR, in contrast to untransformed CHO cells, all specifically bound the sCAR-binding serotypes. We conclude therefore that Ad serotypes from subgroups A, C, D, E, and F all use CAR as a cellular fiber receptor.     

Carbohydrate Components of Influenza C Virions

The carbohydrate components of influenza C virions grown in chicken kidney (CK) cells were analyzed by gel filtration following exhaustive digestion with Pronase. The [³H]glucosamine-labeled glycopeptides were larger and more heterogeneous than those of influenza A/WSN virions; three major size classes (G₁, G₂, and G₃) were resolved. Treatment with Vibrio cholerae neuraminidase caused a decrease in size of G₁ and G₂, along with release of about 16% of the ³H label. The released sugar components were identified as N-acetylneuraminic acid by thin-layer chromatography. Peak G₃ was highly labeled with [³H]mannose, whereas G₁ and G₂ contained lower levels of mannose. The three major viral glycoproteins gp88, gp65, and gp30 were isolated from sodium dodecyl sulfate-polyacrylamide gels, and their glycopeptide components were analyzed after Pronase digestion. The three size classes of glycopeptides were obtained from any of the three glycoproteins; however, the relative amounts of the three components varied among the glycoproteins. Host cell-derived components, which appear to be mucopolysaccharides and glycoproteins, were found associated with influenza C virions grown in CK cells. These components contained glycopeptides that were mainly of sizes similar to peak G₂ from influenza C virions. Previous studies have shown that influenza A/WSN virus grown in several cell types contained only two size classes of glycopeptides. Two size classes comparable to peaks G₂ and G₃ from influenza C virions were also observed in influenza A/WSN grown in CK cells. Thus the large G₁ glycopeptides appear to be characteristic of influenza C virions.     

Flexibility of DNA and RNA upon Binding to Different Metal Cations. An Investigation of the B to A to Z Conformational Transition by Fourier Transform Infrared Spectroscopy

Abstract

The interaction of DNA and RNA with Cu(II), Mg(II), [Co(NH₃)₆]³⁺ [Co(NH₃)₅Cl]²⁺ chlorides and, cis- and trans-Pt(NH₃)₂Cl₂ (CIS-DDP, trans-DDP) has been studied by Fourier Transform Infrared (FT-IR) spectroscopy and a correlation between metal-base binding and conformational transitions in the sugar pucker has been established. It has been found that RNA did not change from A-form on complexation with metals, whereas DNA exhibited a B to Z transition. The marker bands for the A-form (C′₃-endo-anti conformation) were found to be near 810–816 cm^?1, while the bands at 825 and 690 cm^?1 are marker bands for the B- conformation (C′₂-endo, anti), The B to Z (C₃′-endo, syn conformation) transition is characterized by the shift of the band at 825 cm^?1 to 810–816 cm^?1 and the shift of the guanine band at 690 cm^?1 to about 600–624 cm^?1.     

Evolutionary relationships between laboratory mice and subspecies of Mus musculus based on the genetic study of pancreatic proteinase loci,Prt-1, Prt-2, Prt-3, and Prt-6

Various patterns of mouse pancreatic proteinase activity bands were observed on agarose gel electrophoresis. Prt-1 ^a and Prt-1 ^b genes control the positive (PRT-1A) and negative (PRT-1B) expression of tryptic band V, respectively; Prt-2 ^a and Prt-2 ^b correspond to chymotryptic bands II (PRT-2A) and III (PRT-2B); Prt-3 ^a and Prt-3 ^b control the low (PRT-3A) and high (PRT-3B) tryptic activities of band IV; the Prt-1 and Prt-3 loci are closely linked on the same chromosome; Prt-6 ^a and Prt-6 ^b correspond to tryptic bands I (PRT-6A) and I (PRT-6B). Twenty-four laboratory strains from the United States showed the phenotype PRT-1A, PRT-3A, and PRT-2A. Of laboratory strains established in Europe, 6 showed PRT-1A, PRT-3A, and PRT-2A, and 10 had PRT-1B, PRT-3A, and PRT-2A bands. Most wild mice around the world and their descendants showed the phenotype PRT-1B, PRT-3B, and PRT-2A. Only the phenotype of M. m. brevirostris was PRT-1A, PRT-3A, and PRT-2A, which was the same as most laboratory inbred strains. PRT-2B was observed mainly in Japanese (M. m. molossinus) and Korean (M. m. yamashinai) wild mice. PRT-6B was detected only in Mus spicilegus and Mus caroli, but all other mice including wild populations and laboratory strains showed PRT-6A. New biochemical phenotypes such as PRT-2C and PRT-3C were also found in this study.     

Querscheibenspezifische Unterschiede in der3H-Thymidin-Markierung während der Larvenentwicklung vonChironomus thummi piger

In salivary gland chromosome II ofChironomus, region A2j-A3(d) replicates during the whole replication cycle.³H-thymidine is incorporated in this region for a longer time than in bands of greater DNA values (Hägele, 1970). However, no extra DNA is accumulated in A2j-A3(d). Therefore it was supposed that in addition to the duplication of structural DNA an extra DNA is synthesized which immediately disappears from the chromosome. In this report the attempt was made to test this hypothesis. — Using³H-thymidine, the autoradiographic patterns have been studied which occur in the salivary gland chromosomes II ofChironomus thummi piger at the end of a replication step. The probable order of their sequence has been established. At the mid phase of a replication step region A2j-A3(d) and a certain number of definite bands are labelled whereas at the very end of DNA synthesis only A2j-A3(d) shows labelling. It is demonstrated that this region replicates for a longer time than regions containing up to 3.8 times more DNA. Moreover in most cells³H-thymidine is incorporated in region A2j-A3(d) at the end of synthesis at a higher rate than in late replicating bands. In this region there exists a considerable difference in relative grain density within the same phase of a replication step. This difference cannot be found in other bands studied. — These labelling patterns occur in chromosomes of both young larvae (8–9 days old) and prepupae (15–17 days old) if the larvae are prepared immediately after incubation in the isotope. — However, if young larvae are incubated in³H-thymidine and then develop to prepupae in water free of isotope region, A2j-A3(d) is unlabelled at the end of a replication step in half of the cells studied. In the other half this region shows labelling but the relative grain density is markedly reduced. The labelling pattern of other bands is not changed. Therefore loss of radioactive DNA in A2j-A3(d) is of real occurrence. — This loss probably takes place within the replication steps 1 or 2 between young larvae and praepupae. In these replications the structural DNA and the extra DNA, newly synthesized in A2j-A3(d), are unlabelled. The extra DNA disappears immediately from the chromosome. If, by chance, an exchange takes place between newly synthesized unlabelled DNA chains of extra DNA and old labelled DNA, then loss of radioactive DNA would be the result.     

Localization and characterization of chromatin within the interphase nucleus of Amoeba proteus by means of in situ centrifugation and radioautography

Centrifugation of living Amoeba proteus labeled with ³H-thymidine permits the identification by electron microscopic radioautography of chromatin in the interphase nucleus by segregating (through centrifugation-induced stratification) the relatively dilute chromatin from the remainder of the nuclear contents. This procedure reveals that the bulk of the chromatin is in the form of a network of 800 to 900 Å fibrils that are moved by centrifugation to a region just centripetal to the rapidly sedimenting nucleoli. — There is a surprising absence of ³H-thymidine labeling associated with the numerous A. proteus nucleoli, raising the possibility that in this organism the genes specifying ribosomal RNA are non-nucleolar. ³H-thymidine label also is absent from nuclear helixes, membranes, and all other recognizable nuclear regions.     

Cytogenetic and molecular aspects of position effect variegation in Drosophila

Variations in compaction of chromosomal material of the rearrangements Dp(1;f) 1337, Dp(1;f) R, Dp(1;1)pn2b, and T(1;4)w ^m258-21, which display an extended position effect, were characterized. Morphological changes found in these rearangements were assigned to two major types: (i) continuous compaction, in which bands and interbands located distal to the eu/heterochromatin junction fuse into one compacted block of chromatin. The extent of compaction is increased by enhancers of position effect (low temperature, removal of the Y or 2R chromosome heterochromatin). In extreme cases compaction extends over dozens of bands. (ii) Discontinuous compaction, in which at least two zones of compaction separated by morphologically normal zones can readily be identified. As a result, some regions located at a greater distance from heterochromatin may be compacted more frequently than others than map nearer to it. A few regions (1D, 2B1-12, 2D) were shown to be most frequently compacted in all rearrangements investigated. The 2B13-18, 2C1-2, 2E, and 2F regions exhibited the lowest frequencies of compaction. Compaction of the zone containing the 2B1-12 bands is always accompanied by inactivation of the ecs locus, which maps in the 2B3-5 puff. At the same time the 2C1-2 and 2E bands located nearer to the breakpoint can retain normal morphology and puffing in response to ecdysterone. The results are interpreted as morphological manifestations of the discontinuity of the spreading effect.by W. Beermann