Recruitment failure in Florida Keys <Emphasis Type="Italic">Acropora palmata,</Emphasis> a threatened Caribbean coral

Recovery of Acropora palmata from its currently imperiled status depends on recruitment, a process which is poorly documented in existing Caribbean coral population studies. A. palmata is thought to be well adapted to proliferate through the recruitment of fragments resulting from physical disturbances, such as moderate intensity hurricanes. This study monitored fifteen 150 m² fixed study plots on the upper Florida Keys fore-reef for asexual and sexual recruitment from 2004 to 2007. Between July and October 2005, 4 hurricanes passed by the Florida Keys, producing wind speeds on the reef tract of 23 to 33 m s⁻¹. Surveys following the hurricanes documented an average loss of 52% estimated live tissue area within the study plots. The percentage of “branching” colonies in the population decreased from 67% to 42% while “remnant” colonies (isolated patches of tissue on standing skeleton) increased from 11% to 27%. Although some detached branches remained as loose fragments, more than 70% of the 380 fragments observed in the study plots were dead or rapidly losing tissue 3 weeks after Hurricane Dennis. Over the course of the study, only 27 fragments became attached to the substrate to form successful asexual recruits. Meanwhile, of the 18 new, small encrusting colonies that were observed in the study, only 2 were not attributable to asexual origin (i.e., remnant tissue from colonies or fragments previously observed) and are therefore possible sexual recruits. In summary, the 2005 hurricane season resulted in substantial loss of A. palmata from the upper Florida Keys fore-reef from a combination of physical removal and subsequent disease-like tissue mortality, and yielded few recruits of either sexual or asexual origin. Furthermore, the asexual and sexual fecundity of the remaining population is compromised for the near future due to the lack of branches (i.e., “asexual fecundity”) and overall loss of live tissue.     

Induced colonization of corals by a clionid bioeroding sponge

Colonization abilities of the bioeroding sponge Cliona orientalis were studied in a field experiment conducted at Orpheus Island, on the central Great Barrier Reef. Live grafts of sponge tissue were fixed onto nine coral species. The sponge was able to invade seven of these nine coral species: Porites australiensis, Porites cylindrica, Porites rus, Acropora formosa, Astreopora myriophtalma, Favites abdita and Montastrea curta. No sponge tissue was observed in Lobophyllia hemprichii and Pachyseris speciosa. While colonization of dead substrates can take place within a few weeks, invasion through live coral tissue occurred after 2-3 months. The frequency and area of sponge tissue in coral tissue were statistically independent of host coral species. The coral species affected sponge survival and health, presumably due to coral chemical defense. We ranked coral defense abilities against the sponge in the order: L. hemprichii > P. cylindrica = P. rus = F. abdita > A. formosa = M. curta (= P. speciosa) > A. myriophtalma = massive Porites. Overall, sponge fragments had a considerable capacity to survive on live coral and to recover from injury, handling and the initial stress caused by contact with corals (96% survived for 3 months). The ability of the sponge to resist coral defense on direct contact may offer it an alternative to sexual reproduction - by propagation through fragments - and may enable the sponge to invade various coral species laterally.     

An analysis of the loss of acroporid corals at Looe Key,Florida, USA: 1983–2000

The Caribbean reef-building corals Acropora palmata and Acropora cervicornis have undergone widespread declines in the past two decades, leading to their designation as candidates for listing under the United States Endangered Species Act. Whole-reef censuses in 1983 and 2000 at Looe Key National Marine Sanctuary in the Florida Keys provide estimates of areal loss of live Acropora spp. cover. Area (square meters) of live coral cover was quantified from depiction on scaled base maps of extent of coral cover observed by a snorkeler on each reef spur at each census. Certain thickets appear to have been persistent (though none expanded), but the total area of live A. palmata at Looe Key is estimated to have declined by 93% and A. cervicornis by 98% during this 17-year interval. It is likely that acroporid populations may have already undergone substantial decline prior to our initial census in 1983.     

Distribution of a nematocyst-bearing sponge in relation to potential coral donors

Haliclona sp. 628 (Demospongiae, Haplosclerida, Chalinidae), a sponge found on the reef slope below 5 m depth on the Great Barrier Reef, has two unusual characteristics. It contains a symbiotic dinoflagellate, Symbiodinium sp., similar in structure to the dinoflagellate found within Acropora nobilis (S. microadriaticum), and it contains coral nematocysts randomly distributed between the ectosome and endosome and usually undischarged in intact sponge tissue. Given the unusual occurrence of nematocysts in Haliclona sp. 628, the focus of this study was to determine the distribution of this species of sponge on the reef slope at Heron Island Reef in relation to the distribution of potential coral donors. A combination of line and belt transects was used to estimate the abundance of Haliclona sp. 628 and a co-occurring congener, Haliclona sp. 1031, which does not contain nematocysts, at three widely separated sites on the reef slope at Heron Island Reef. The abundance of different types of substratum (sand, sand-covered coral rubble, dead A. nobilis, live A. nobilis, other live coral, and other dead coral) along the transects and the substratum to which each sponge colony was attached were also recorded. Despite the predominance of live A. nobilis and sand-covered rubble at all sites, between 30 and 55% of Haliclona sp. 628 colonies were attached to dead A. nobilis which comprised less than 8% of the available substratum along any transect. In contrast, Haliclona sp. 1031 was found significantly more frequently on other dead corals and less frequently on live A. nobilis than would be expected based on the availability of the different substrata in the sites. Potential explanations to account for the distribution of Haliclona sp. 628 in relation to potential coral donors are discussed.     

Mediation of growth by conspecific neighbors and the effect of site in transplanted fragments of the coral Porites attenuata Nemenzo in the central Philippines

To investigate facilitative and competitive effects of conspecific neighbors on coral growth, fragments of Porites attenuata were reciprocally transplanted between two reefs. Transplants were interspersed with dead coral fragments or live conspecifics and monitored for growth. Over 13 months, transplant performance differed between sites. Those from degraded Bais Bay grew significantly slower in all treatments compared with those from more pristine Apo Island, and Bais fragments branched less (Bais: 1.5ǂ.16/transplant; Apo: 8.1ǂ.66/transplant). Treatment effects were observed in Apo; fragments with live conspecifics branched less but grew taller, adding significantly more surface area than those with dead neighbors. Clonal fragments differed significantly in their responses, indicating environmentally induced effects. These interactions affected growth and morphology prior to physical contact between fragments. This illustrates a benefit of manipulating the biotic environment of early transplants: dense stocking in ocean nurseries could stimulate early growth, and subsequent spacing would allow lateral branching and reduce competition.     

Photosynthetic performance of Arctic macroalgae after transplantation from deep to shallow waters

Transplantation experiments conducted in the Arctic Kongsfjord (Spitsbergen) in summer 1997 investigated the effects of various types of filtered natural radiation (solar, solar without UV-B, solar without UV-A/B) on photosynthesis of various macroalgae. Two brown algal species (Laminaria solidungula, Saccorhiza dermatodea) and four red algal species (Palmaria palmata, Phycodrys rubens, Phyllophora truncata, Ptilota plumosa) were collected from deeper waters, kept in UV-transparent plexiglass tubes wrapped with different spectral cut-off filter foils and positioned at fixed depths in shallow waters for 7-9 days. At regular intervals, chlorophyll fluorescence of photosystem II (optimum quantum yield, F_v/F_m) was determined, as an indicator of photosynthetic performance. The data demonstrate that shallow-water species such as P. palmata are much less affected by natural photosynthetically active radiation (PAR) and UV radiation near the surface than extremely sensitive deep-water species such as Phyc. rubens which exhibited strong decreases in photosynthetic performance, as well as photobleaching of part of the thallus. The other species showed intermediate response patterns. In most species investigated inhibition of photosynthesis was mainly caused by the UV-B wavelengths. Interpretation of the data clearly indicates species-specific tolerances of photosynthesis to ambient solar radiation which can be explained by broad physiological acclimation potentials and/or genetic adaptation to certain (low or high) irradiances. The species-specific photosynthetic performance under radiation stress is in good accordance with the vertical distribution of the macroalgae on the shore.     

Enzymatic defences against photooxidative stress induced by ultraviolet radiation in Arctic marine macroalgae

The activities of the antioxidant enzymes superoxide dismutase (SOD), glutathione reductase (GR), ascorbate peroxidase (APX) and catalase (CAT), as well as the content of the antioxidant compound ascorbic acid, were determined in five green, seven red and ten brown macroalgal species from the Kongsfjord (Spitsbergen, Svalbard, Norway). In general, higher antioxidant enzyme activities and a higher content of ascorbic acid were measured in green algae in comparison to red and brown algae. Species from the eulittoral and upper sublittoral (Acrosiphonia penicilliformis, Monostroma arcticum, Chaetomorpha linum, Chaetomorpha melagonium, Devaleraea ramentacea, Palmaria palmata) showed higher antioxidant enzyme activities compared to species from the lower sublittoral, indicating a more efficient biochemical protection in algae exposed to higher stress conditions in the field. The activity of GR was stimulated by artificial ultraviolet radiation in the green alga M. arcticum, and in the red algae Coccotylus truncatus and Phycodrys rubens after 84 h under continuous exposure. GR activity was even higher when the UV exposure was followed by incubation in darkness for 24 h, indicating a higher elimination rate of toxic oxygen radicals under these conditions. D. ramentacea, P. palmata and A. penicilliformis did not show any significant effect of UV radiation on CAT, APX and SOD activities after 8 days of culture under laboratory conditions. However, a significant reduction in activities of GR and SOD was observed in A. penicilliformis when solar UV radiation was cut off by selective filter foils in the field, indicating a lower oxidative stress in the absence of UV radiation. Overall, the ecological success of macroalgae in the eulittoral and upper sublittoral is supported by an enhanced oxygen-reactive scavenging system, allowing fast acclimation to the changes in environmental radiation conditions.     

An experimental study of colony-founding in pine saplings by queens of the arboreal ant, Crematogaster ashmeadi

Summary: Newly mated queens of the arboreal ant Crematogaster ashmeadi initiate colonies in old beetle galleries in the dead branches of longleaf pine trees. In a study by Hahn (1996), a number of tree characteristics were correlated with the number of newly-mated queens in those trees, with branch length the best indicator of queen presence. Three of these characteristics, tree height, dead branch length, and the number of dead branches were tested in an experiment to see which, if any, the queens were using to choose a tree. Both tree height and the number of dead branches significantly influenced queen choice: shorter trees (4-5 m) had more queens than tall ones (7-9 m), and trees with 8 branches had significantly more queens than trees with 2 branches. Branch length had no effect on the number of queens. These findings suggest that newly mated Crematogaster ashmeadi queens search for founding trees on the basis of the height of a sapling and its number of dead branches. Modes of searching are discussed.     

Predation risk and competition effects on the life-history characteristics of larval Oregon spotted frog and larval red-legged frog

We conducted an artificial pond experiment to test hypotheses about the effects of competition and non-lethal predator cues on metamorphic characteristics of sympatric Oregon spotted frogs (Rana pretiosa) and red-legged frogs (Rana aurora) in southwestern British Columbia. Tadpoles were exposed to the presence or absence of one another, two density levels and to the presence or absence of predacious odonate larvae (Aeshna palmata) isolated in enclosures. In the artificial pond study, R. aurora were significantly larger at metamorphosis (12%) and exhibited only slightly longer larval periods when exposed to Aeshna. In the presence of R. pretiosa, they significantly decreased time to metamorphosis, and were significantly larger at metamorphosis (12%) than those reared alone. Rana pretiosa in treatments with R. aurora were somewhat larger at metamorphosis when a non-lethal predator was present, and in treatments where R. pretiosa were alone with a predator tadpole mass at metamorphosis was smaller than those in the absence of Aeshna, but these results were not statistically significant. Both species reduced activity and moved away from the predator in the presence of an enclosed dragonfly larva in the laboratory. Most tadpole mesocosm experiments have found that the trade-off between size and timing of metamorphosis is extremely important to amphibians, but we suggest that the trade-off discussed in traditional amphibian models may not apply to species like R. pretiosa that are exposed to the same gape-limited predators upon reaching metamorphosis.     

Paradoxical selective feeding on a low-nutrient diet: why do mangrove crabs eat leaves?

Sesarmid crabs dominate Indo West-Pacific mangroves, and consume large amounts of mangrove litter. This is surprising, since mangrove leaves have high tannin contents and C/N ratios that far exceed 17, normally taken as the maximum for sustainable animal nutrition. This paradox has led to the hitherto untested hypothesis that crabs let leaves age in burrows before consumption, thereby reducing tannin content and C/N ratio. We excavated burrows of Neosarmatium meinerti within high-shore Avicennia marina mangroves, and investigated whether burrow leaves had C, N or C/N values significantly different from those of senescent leaves. Leaves were found in <45% of burrows, mostly only as small fragments, and N concentrations and C/N ratios of burrow leaves never varied significantly from senescent leaves. The leaf-ageing hypothesis was therefore not supported. In the field N. meinerti and Sesarma guttatum fed on sediment in 76% and 66-69% of observations, respectively, and on leaves in <10% of observations. Sediments from two A. marina mangroves had a mean C/N ratio of 19.6. Our results, and the literature, show that mangrove leaves are unlikely to fulfil the N requirements of crabs, whether or not leaf ageing takes place. Sediment detritus could be a richer source of N, as shown by lower C/N ratios and regular ingestion by crabs. By fragmenting leaves crabs may be elevating the nutritional quality of the substrate detritus.     

Community structure, survival and mortality factors in arctic populations of Eupontania leaf gallers

We studied survival, mortality factors, and community structure of nine species of leaf-galling sawflies, Eupontania spp., living on ten willow species (Salix spp.) at six sites on the Russian arctic tundra. The sawfly species represented two different gall types: the viminalis-type, which forms pea-shaped galls on the underside of leaf blades, and the vesicator-type, which forms bean-shaped galls on both sides of the leaf blade. Gall communities in the northernmost site had only one parasitoid species, but up to six parasitoids were found at the southernmost site. Inquiline parasitoids were encountered only in the two southern sites. Survival of the larvae varied between 20.0 and 82.8% among galler species at different sites. Parasitoids were the most important mortality factor for the sawflies. They caused mortality of 7.8-65.4%, depending on galler species and site, and it was highest in the northernmost site. Plant-specific mortality varied from 1.7 to 28.4% by galler species and it tended to decrease towards the north. Mortality from parasitoids was greater in the vesicator-type gallers than in the viminalis-type gallers. The total mortality caused by parasitoids in the arctic communities does not appear to differ from that in the diverse southern communities of Eupontania in Middle Europe, Scandinavia and North America, despite the assemblage having only a few members in the Arctic. The largest difference between the southern and the northern communities was the lack of inquiline parasitoids in the north. Our data do not support the hypothesis that abiotic, rather than biotic, factors would be more important in determining the abundance of populations of herbivorous insects in the harsh arctic environment.     

Nutrient partitioning and storage in arid-zone forests of the mangroves Rhizophora <Emphasis Type="Italic">stylosa</Emphasis> and <Emphasis Type="Italic">Avicennia</Emphasis><Emphasis Type="Italic">marina</Emphasis>

Mangrove partitioning and storage of macronutrients and trace metals were examined in different arid coastal settings of Western Australia. Total living biomass in three Rhizophora stylosa forests, which ranged from 233 to 289 t DW ha^-1, was significantly greater than biomass in three Avicennia marina forests (range: 79-155 t DW ha^-1). Although prop roots and stems were the largest single tree components for R. stylosa and A. marina, respectively, most nutrients were stored in leaves and living roots of both species. However, only a small fraction of the total nutrient pool was vested in tree biomass; the vast bulk was in soils. A large below-ground pool of dead fine roots was identified at all stands, equivalent to 36-88% DW of total living tree biomass. The amount of Ca, S, Cl, Na, Si, Fe, Mn, Zn, B, Mo and Cu vested in dead roots of both species was greater than in the total living tree biomass. The proportion of Fe and S vested in live and dead roots was exceptionally large, consistent with previous evidence of metal plaques on mangrove roots. Sulphur, iron and zinc in dead roots of both species constituted the bulk of these metals. R. stylosa trees preferentially accumulated more Mg, S, Cl, Na, Si, Fe, Mn, B and Mo than A. marina trees. Proportionally greater storage of P, N, Ca, K, Cu and Zn occurred in two of the three A. marina forests. Foliar concentrations of Mg, S, Mn, B and Mo in mangrove leaves were at the high end of the range reported for other tropical trees, but other elemental concentrations were at the low or mid-range. Nitrogen limitation in these forests is implied by a positive correlation between total tree N and net canopy production and by a lower percentage of ecosystem N in tree biomass as compared with other forests. Unlike terrestrial forests where a large proportion of nutrient capital is vested in floor litter, most elements in these mangrove forests are stored in dead roots. A large reservoir of dead roots below the forest floor may serve as a conservation mechanism, particularly in such arid oligotrophic environments.     

Competition between macroalgae and corals: effects of herbivore exclusion and increased algal biomass on coral survivorship and growth

Recent declines in coral abundance accompanied by increases in macroalgal cover on Florida reefs highlight the importance of competition for space between these groups. This paper documents the frequency of coral-algal interactions on the Northern Florida Reef Tract and evaluates the effects of grazer exclusions and experimental algal addition on growth and tissue mortality of three coral species, Siderastrea siderea, Porites astreoides, and Montastraea faveolata. The frequency of interactions between corals and macroalgae was high as more than 50% of the basal perimeter of colonies was in contact with macroalgae; turf forms, Halimeda spp., and Dictyota spp. were the most common groups in contact with corals. Decreased grazing pressure resulted in significant increases in algal biomass within cages, and caged corals showed species-specific susceptibility to increased algal biomass. While no effects were detected for S. siderea, significant decreases in growth rates were documented for caged P. astreoides which had growth rates three to four times lower than uncaged colonies. When an algal addition treatment was included to duplicate maximum algal biomass levels documented for reefs in the area, colonies of P. astreoides in the algal addition treatment had growth rates up to ten times lower than uncaged colonies. High susceptibility to algal overgrowth was also found for the reef-building coral M. faveolata, which experienced significant tissue mortality under both uncaged (5.2% decrease in live tissue area per month) and caged (10.2% per month) conditions. The documented effects of increased algal biomass on coral growth and tissue mortality suggest a potential threat for the long-term survivorship and growth of corals in the Florida Reef Tract if present rates of algal growth and space utilization are maintained.     

Influence of forest type and tree species on canopy ants (Hymenoptera: Formicidae) in Budongo Forest, Uganda

The arboreal ant fauna was investigated in Budongo Forest, a seasonal rain forest in Uganda, using the insecticidal fogging technique. Ants were collected from 61 trees, between 7 and 33 m in height, belonging to four tree species. Trees were growing in adjacent plots of forests characterized by different use and structure: an old primary forest, a primary swamp forest along a small river, and a secondary forest where selective logging was carried out for 30 years. A total number of 37,065 ants, belonging to 161 species in 30 genera were collected. Considering the high number of species found only once, the completeness of the canopy ant fauna was relatively high and of relatively similar magnitude as samples from the Neotropics or the Oriental region. Up to 37 ant species on a single tree, with an average of 18.2 species per tree, were found. Forty-four ant species (28.1%) were found only once, less than ten individuals were found for each of 88 species (54.7%), but 64.0% of all individuals belonged to one of five species. Considering the high numerical dominance of a few ant species like a Pheidole sp., Tetramorium aculeatum (Mayr) and a Crematogaster sp., there is some evidence for an ant mosaic in the lower canopy of the Budongo Forest. Individual numbers of ants were strongly correlated with nests in the fogged tree, though the ants were not homogeneously distributed in the tree crowns. Diversity measures that strongly depend on individual numbers such as the Morisita-Horn index or rarefaction methods were calculated, but results were not concordant with those of incidence-based estimates such as jack-knife calculations. Differences in ant species richness and faunal composition between tree species were low, but more significant between forest types. The ant fauna in the secondary forest was less diverse with 12.6% fewer species compared to the primary forest sites. The average number of ant species per tree was significantly lower in the secondary forest (<20% of the species; F=8.03, df=59, P<0.01) than in the undisturbed forest types. Cataulacus, Leptothorax, Tetraponera, and Polyrhachis, which are typical canopy-dwelling ant genera, had a significantly higher diversity and frequency in the two primary forest types (F=4.17, df=53, P<0.05). Secondary forest trees are often younger, lacking dead branches and epiphytes which are important requisites for ant colonization on trees.     

Viable bacterial biomass and functional diversity in fresh and marine waters in the Canadian Arctic

Bacterial biomass and functional diversity in four marine and four freshwater samples, collected from Resolute Bay, Nunavut, Canada, were studied using fluorescent nucleic-acid staining and sole-carbon-source utilization. Viable microbial counts using the LIVE/DEAD BacLight Viability Kit estimated viable marine bacterial numbers from 0.7 to 1.8᎒⁶ cells/l, which were lower than viable bacterial numbers in freshwater samples (2.1-9.9᎒⁶ cells/l) (RCBD-ANOVA). Calculations of the Shannon-Wiener diversity index and average well colour development were based on substrate utilization in ECO-Biolog plates incubated at 4°C and 20°C for 38 and 24 days, respectively. The Shannon-Wiener diversity of the marine water samples was significantly greater ( x _H'=2.40ǂ.08, P <0.005; RCBD-ANOVA) than that of freshwater samples ( x _H'=1.20ǂ.00, P <0.005; RCBD-ANOVA). Differences in microbial diversity between fresh and marine water samples at 4°C ( x _4°C =2.01) and 20°C (x_20°C =2.31) were also detected by RCBD-ANOVA analysis. Interactions between water type and incubation temperature were not significant ( F =1.926, F _c=5.12). Principal component analysis revealed differences in metabolic substrate utilization patterns and, consequently, the microbial diversity between water types and samples.     

Regulation of xylem sap flow in an evergreen, a semi-deciduous, and a deciduous Meliaceae species from the Amazon

The significance of phenological characteristics, stomatal conductance of the leaves, and stem water storage fluctuations for the regulation of xylem sap flow in an evergreen (Carapa guianensis Aubl.), in a semi-deciduous (Swietenia macrophylla King), and in a deciduous (Cedrela odorata L.) Meliaceae species was studied in a 7-year-old plantation near Manaus, Brazil. The study responds to the increasing demand for knowledge on the water relations of highly exploited timber trees of the Amazon. Xylem sap flow measurements indicated that the daily sap flow of Carapa (3.8 l day^-1 tree^-1 to 16.4 l day^-1 tree^-1) exceeded the daily sap flow of Swietenia (2.4 l day^-1 tree^-1 to 7.0 l day^-1 tree^-1) and Cedrela (1.6 l day^-1 tree^-1 to 11.6 l day^-1 tree^-1) during the entire year, although the highest flux densities were measured in Cedrela. The decrease in xylem sap flow observed in periods with low soil water potentials and high atmospheric vapor saturation deficits was more pronounced in the deciduous (Cedrela) and semi-deciduous species (Swietenia) than the evergreen species (Carapa). Carapa, which has the highest daily sap flow, had the highest biomass and sapwood portion. The high flux densities measured in Cedrela most likely result from the large earlywood vessels in this species. The seasonal variation of xylem sap flow of the three species was correlated with the stomatal conductance of the leaves measured by infiltration experiments. Stem water storage fluctuations in Carapa and Swietenia were predominantly due to transpiration; in Cedrela it was predominantly due to evaporative water loss on the stem surface during dry periods.     

Coral Bioerosion at Enewetak: Agents and Dynamics

Significant differences were found in the extent to which massive coral species at Enewetak are excavated by boring organisms: Goniastrea retiformis, 7.9%; Porites lutea, 2.5%; and Favia pallida, 1.2%. While polychaetes constituted the most abundant and diverse group of coral associates, clionid sponges accounted for approximately 70–80% of skeletal damage. Clionid boring rates are initially very high but burrowing ceases when a particular burrow size (˜0.6 cm) or distance from the surface (≦2 cm) is reached. Most coral skeletal excavation occurs within 2 cm of a dead surface. Therefore, bioerosional damage to corals depends primarily on the amount of skeletal surface not covered by live coral tissue. Damage to skeletons is inversely correlated with colony size but is not correlated with coral growth rates or water depth. Massive corals have a potential escape in size from catastrophic bioerosion. Models relating 1) coral growth forms to skeletal density and stability in currents, 2) resistance of coral skeletons to breakage by water movement and suspended rubble, and 3) dead surface area on coral heads to bioerosional damage and consequent probability of detachment from the substrate, are proposed.     

Efficient detection of DNA polymorphism in cabbage and rice cultivars by PCR-RF-SSCP (PRS)

PCR (polymerase chain reaction)-RF(restriction fragment)-SSCP (single-strand conformation polymorphism) - designated here as PRS - is a combined method of SSCP and PCR-RFLP (restriction fragment length polymorphism) - designated as CAPS (cleaved amplified polymorphic sequence) - and was efficient in detecting intraspecific variation of the SLR1 gene in Brassica oleracea. One to six nucleotide changes in restriction fragments of the SLR1 gene were detected as different bands in PRS. In an analysis of randomly chosen DNA fragments in cabbage, PRS detected DNA polymorphism between different cultivars with more than 60% of the primer pairs used except for a combination of two cultivars having highly similar characteristics. In rice, no DNA polymorphism was found between two Japonica cultivars, while more than 80% of the primer pairs showed DNA polymorphism between Japonica cultivars and Indica cultivars. PRS had a 1.5- to twofold greater ability to detect DNA polymorphism in these cabbage and rice cultivars than CAPS. The present study indicated that PRS is potentially useful for the identification of crop cultivars and genetic mapping of DNA fragments including genes of interest.     

An interactive effect of simultaneous death of dwarf bamboo, canopy gap, and predatory rodents on beech regeneration

To clarify the interactive effect of the simultaneous death of dwarf bamboo (Sasa kurilensis), forest canopy gap formation, and seed predators on beech (Fagus crenata) regeneration, we analyzed beech demography from seed fall until the end of the first growing season of seedlings in an old-growth forest near Lake Towada, northern Japan. The simultaneous death of S. kurilensis took place in 1995. We established four types of sampling site differing in forest canopy conditions (closed or gap) and Sasa status (dead or alive). Beech seed survival and emergence ratio were both highest in gaps with dead Sasa (gap-dead), because rate of predation was lowest. Seedling survival during the first growing season was also highest in the gap-dead treatment, because of less predation and less damping off. As a result, even though density of seed fall was lowest in the gap-dead treatment, the living seedling density there was highest at the end of the first growing season. Predation, which caused the greatest mortality during the seed and seedling stages, was significantly lower at both sites in gaps and sites with dead Sasa. This was probably due to changes in the behavior of rodents in response to the structure of the forest canopy and undergrowth. Both the death of Sasa and canopy gap formation allowed seedlings to avoid damping off because of the high light availability. The indirect effect of the simultaneous death of Sasa and canopy gap formation in reducing predation contributed more to beech regeneration than their direct effect in increasing light for the seedlings.     

Identification and classification of S haplotypes in Raphanus sativus by PCR-RFLP of the S locus glycoprotein (SLG) gene and the S locus receptor kinase (SRK) gene

Polymorphism of the S-locus glycoprotein (SLG) and S-locus receptor kinase (SRK) genes in Raphanus sativus was analyzed by PCR-RFLP using SLG- and SRK-specific primers. Twenty four inbred lines of R. sativus could be grouped into nine S haplotypes. DNA fragments of SLG alleles specifically amplified from five S haplotypes by PCR with Class-I SLG-specific primers showed different profiles upon polyacrylamide-gel electrophoresis after digestion with restriction endonucleases. The five R. sativus SLG alleles were determined for their nucleotide sequences of DNA fragments. Comparison of the amino-acid sequences with a reported Brassica SLG (S₆) showed 77-84% homology. Deduced amino-acid sequences showed 12-conserved cystein residues and three hypervariable regions which are characteristic of Brassicsa SLG. A DNA fragment was also amplified by PCR from two of each S haplotype with Class-II SLG-specific primers, and showed polymorphism when cleaved with restriction endonucleases. The nucleotide sequences of amplified DNA fragments of the Class-II SLG revealed about 60% similarity with those of the Class-I SLG. It is concluded that there exist both Class I and Class II S alleles in R. sativus, as in Brassica campestris and Brassica oleracea. PCR using SRK-specific primers amplified a DNA fragment of about 1.0 kb from seven of each S haplotype out of 24 tested. These DNA fragments showed high polymorphism in polyacrylamide-gel electrophoresis after digestion with restriction endonucleases. Nucleotide sequences of the DNA fragments amplified from the seven S haplotypes showed that the fourth and the fifth exons of SRK are highly conserved, and that there is high variation in the fifth intron, the sixth intron and seventh exon of the SRK which may be responsible for the polymorphic band patterns in PCR-RFLP analysis. The PCR-RFLP method has proven useful for the identification of S alleles in inbred lines and for listing S haplotypes in R. sativus. Phylogenic analysis of the SLG and SRK sequences from Raphanus and Brassica revealed that the Raphanus SLGs and SRKs did not form an independent cluster, but were dispersed in the tree, clustering together with Brassica SLGs and SRKs. Furthermore, SLGs and SRKs from Raphanus were both grouped into Class-I or Class-II S haplotypes. Therefore, these results suggest that the diversification of the SLG and SRK alleles occurred prior to the differentiation of the two genera Brassica and Raphanus.