Chemical composition and antimicrobial activity of Cymbopogon citratus and Cymbopogon giganteus essential oils alone and in combination

As part of ongoing research on the chemical composition and the antimicrobial properties of Burkinabe plants essential oils alone and in combination, essential oils (EOs) from leaves of Cymbopogon citratus and Cymbopogon giganteus from Burkina Faso were analyzed by GC-FID and GC-MS. Five constituents, which accounted for 96.3% of the oil, were identified in the EO of C. citratus. Geranial (48.1%), neral (34.6%) and myrcene (11.0%) were the major constituents. For C. giganteus a total of eight compounds were identified which represented 86.0% of the oils extracted. The dominant compounds were limonene (42%) and a set of monoterpene alcohols: trans-p-mentha-1(7),8-dien-2-ol (14.2%), cis-p-mentha-1(7),8-dien-2-ol (12%), trans-p-mentha-2,8-dien-1-ol (5.6%) and cis-p-mentha-2,8-dien-1-ol (5.2%). The EOs were tested against nine bacteria by using disc diffusion and microdilution methods. C. giganteus EO showed antimicrobial effects against all microorganisms tested whereas C. citratus EO failed to inhibit Pseudomonas aeruginosa. The antimicrobial activity of combinations of the two EOs was quantified by the checkerboard method. Combinations of the two EOs exerted synergistic, additive and indifferent antimicrobial effects. Results of the present investigation provide evidence that the combinations of plant EOs could be assessed for synergistic activity in order to reduce their minimum effective dose.     

Semichemical pulping of Miscanthus giganteus. Effect of pulping conditions on some pulp and paper properties

Miscanthus is an interesting raw material for pulp production, it is a high yield low maintenance plant with a high cellulose and hemicellulose content. Its semichemical pulp can be beneficial in paper for cardboard production process, which nowadays is usually made from secondary fibers, by increasing the mechanical properties of the paper produced. In this study, the influence of the percentage of NaOH used related to the dry Miscanthus weight, digestion time and refining time on some pulp and paper properties have been studied and compared with pulp obtained from commercial fluting paper (CF). Fiber size distribution of the Miscanthus pulp was found to contain a higher fines (less than 0.2 mm) percentage than the CF pulp. Hand-sheets made from Miscanthus pulp showed better mechanical properties than the ones made with the CF pulp. CMT, RCT and CCT indexes were higher when using 100% Miscanthus pulp or mixtures of Miscanthus and CF pulp. The only property which worsened was Gurley porosity. Of the three operational variables changed, refining time exerts the most significant influence on the pulp and paper properties measured.     

Energy source utilization by embryos and larvae of the muricid snail Chorus giganteus (Lesson, 1829)

The muricacean snail Chorus giganteus presents intracapsular development and the occurrence of nurse eggs that are ingested by the early encapsulated embryos indicate both that these snails develop through a lecitotrophic type of development and that reserves would be sufficient to support settlement and metamorphosis. In order to get more information about the use of energy resources, the dynamics of biochemical components throughout development at three temperatures (9, 12 and 15 °C) and the energetic cost of free-swimming life and metamorphosis are described. The uptake of ³H-alanine, as representative of dissolved organic matter, by embryo and larval stages is also investigated. While protein levels increased at all temperature conditions after ingestion of nurse eggs, lipids only increased when embryo and larvae were reared at 15 °C, and no change in carbohydrate levels was detected at any of the temperatures. The RNA/DNA indexes showed no significant differences with temperature at any stage of development but decreased along with the development of individuals. After hatching, organic matter and energy content of juveniles steadily decreased. Individuals at any of the developmental stage showed to be able to uptake alanine from seawater; the aminoacid uptake capacity increased along with intracapsular development. Uptake of alanine showed to be an active process and to follow Michaelis-Menten kinetics. This would be the first report about dissolved organic matter uptake by encapsulated development stages of any marine invertebrate species and let conclude that these larvae have the ability to obtain exogenous food in a dissolved form and to incorporate it into metabolizable compounds.     

Bleaching Miscanthus x giganteusAcetosolv pulps with hydrogen peroxide/acetic acid. Part 1: Behaviour in aqueous alkaline media

Miscanthus x giganteus bark samples subjected to fractionation by the Acetosolv process under optimal conditions were bleached using hydrogen peroxide and acetic acid in aqueous media under alkaline conditions. The influence of the main operational variables in the bleaching of Acetosolv pulps of M. x giganteus (i.e. hydrogen peroxide concentration, 3–7%; temperature, 55–75 °C; pH 9–11), obtained after treatments, have been assessed on pulp yield, kappa number, viscosity and brightness of bleached pulps. For this purpose, a rotatable and orthogonal second-order factorial design of experiments was used, in order to identify the optimum operating conditions. The obtained empirical mathematical models demonstrate that, in general, the bleaching was efficient, achieving pulps with kappa numbers below 10. The chemical composition and physicochemical properties of the bleached pulps fulfilled the requirements for forthcoming bleaching stages. Moreover, an alkaline extraction stage to eliminate saponifiable groups of Acetosolv pulps was studied, as well as the necessity of use chelating agents in the stage with hydrogen peroxide.     

Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex

The present generic concept of Phoma is broadly defined, with nine sections being recognised based on morphological characters. Teleomorph states of Phoma have been described in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma anamorphs represent a polyphyletic group. In an attempt to delineate generic boundaries, representative strains of the various Phoma sections and allied coelomycetous genera were included for study. Sequence data of the 18S nrDNA (SSU) and the 28S nrDNA (LSU) regions of 18 Phoma strains included were compared with those of representative strains of 39 allied anamorph genera, including Ascochyta, Coniothyrium, Deuterophoma, Microsphaeropsis, Pleurophoma, Pyrenochaeta, and 11 teleomorph genera. The type species of the Phoma sections Phoma, Phyllostictoides, Sclerophomella, Macrospora and Peyronellaea grouped in a subclade in the Pleosporales with the type species of Ascochyta and Microsphaeropsis. The new family Didymellaceae is proposed to accommodate these Phoma sections and related anamorph genera. The present study demonstrated that Phoma radicina, the type species of Phoma sect. Paraphoma and Phoma heteromorphospora, the type species of Phoma sect. Heterospora can be assigned to the Phaeosphaeriaceae and Leptosphaeriaceae respectively.     

Molecular and morphological relationships between two closely related species, Turbinaria ornata and T. conoides (Sargassaceae,Phaeophyceae)

We employed four markers (two chloroplastic, one mitochondrial and one nuclear) to investigate whether Turbinaria ornata and Turbinaria conoides, two morphologically similar brown algae, are distinct species. The molecular data revealed reciprocal monophyly, thus confirming the two algae as discrete species. Nevertheless, taxonomical ambiguities remain. T. conoides is more morphologically variable than T. ornata. We identified an atypical T. conoides morphotype whose blade possesses intramarginal teeth, a morphological characteristic of the T. ornata group that is normally absent within T. conoides. The molecular data indicate, nonetheless, that this morphotype belongs genetically to the T. conoides group. Thus, the results cast doubt upon the validity of using intramarginal teeth for species diagnosis.     

Flavonoids in the species of Cyrtomium (Dryopteridaceae) and related genera

Flavonoids in 19 Cyrtomium, three Cyrtogonellum and two Phanerophlebia taxa were surveyed. Major flavonoids were flavonol O-glycosides based on kaempferol, quercetin, and sometimes myricetin, and C-glycosylflavones, such as isovitexin, vitexin, isoorientin, orientin and their O-glycosides. The C-methylflavanones, farrerol and cyrtominetin, and their 7-O-glucosides were isolated from Cyrtomium devexiscapulae and Cyrtomium laetevirens. Flavanones have been reported from Cyrtomium falcatum sensu lato. Though C. falcatum sensu lato is divided into four taxa, i.e. C. falcatum subsp. falcatum, C. falcatum subsp. australe, C. falcatum subsp. littorale, and C. devexiscapulae, the occurrence of the flavanones was restricted to C. devexiscapulae, and they did not occur in C. falcatum sensu stricto.     

A new fertile Neocalamites from the Upper Permian of Russia and equisetophyte evolution

This paper deals with Neocalamites tubulatus nov. sp., an equisetophyte belonging to the Equisetaceae family. The material studied originates from the Upper Permian deposits of the northern part of European Russia. N. tubulatus nov. sp. is characterized by both sterile and fertile organs belonging to the same parent plant. It has long, flexible stems, rarely branched, with alternating nodes and prolonged ribs on the stem surface corresponding to vascular strands of the stem, and compact lateral strobili, in general aspect similar to the strobili of extant species of Equisetum. N. tubulatus nov. sp. is one of the most ancient representatives of the Equisetaceae family, which shows a distinct morphological pattern of features, among which the lateral position of strobili, characteristic of primitive equisetophytes, is most prominent in this phase of their evolution.     

Species delimitation in the European species of Clavulina (Cantharellales, Basidiomycota) inferred from phylogenetic analyses of ITS region and morphological data

The identification of the conventionally accepted species of Clavulina (Cantharellales, Basidiomycota) in Europe (Clavulina amethystina, Clavulina cinerea, Clavulina cristata, and Clavulina rugosa) is often difficult and many specimens are not straightforwardly assignable to any of those four species, which is why some authors have questioned their identity. In order to assess the status of those species, a morphological examination was combined with the molecular analysis of the ITS region. The same six major clades were obtained in the Bayesian and parsimony phylogenetic analyses, and all six clades were well-supported at least by one of the analyses. Morphological characters, such as the overall branching pattern, the presence and intensity of grey colour, the cristation of the apices, and basidiospore size and shape were to various extents correlated with the phylogenetic signal obtained from the ITS region. The congruence between the molecular analyses and morphology, rather than geographical origin, suggests the existence of several species that can be delimited using a combined phylogenetic and morphological species recognition. The analyses revealed that C. cristata and C. rugosa are well-delimited species. In contrast, more than one taxa could be subsumed under the names C. amethystina and C. cinerea, the taxonomical complexity of which is discussed. The ITS region is proved to be adequate to separate phylogenetic species of Clavulina.     

Phylogenetic and morphological diversity of novel soil cercomonad species with a description of two new genera (Nucleocercomonas and Metabolomonas)

Cercomonads are important components of microbial food webs in soils and aquatic sediments. Here, we investigated the general morphology, behaviour, life cycle and 18S rDNA phylogeny of cercomonad cultures from a German grassland soil habitat. We describe ten new species including two new genera from 23 strains. Three Cercomonas, two Eocercomonas and three Paracercomonas species are described. Based on large phylogenetic distance and distinct morphology, we erect two novel clade B genera near the root of the cercomonad tree. Nucleocercomonas nov. gen. bears a number of characters unusual for cercomonads: Its anterior flagellum is extremely long, it mostly does not glide, and in its most frequent life stage the cell body does not attach to the substratum, but produces unattached pseudopodia. Furthermore, it has a unique nucleus with a peripheral nucleolus that attaches to the nuclear envelope opposite the basal body connection. Metabolomonas nov. gen. is extremely metabolic. It is characterized by a very high beating frequency of the anterior flagellum, fast gliding, rapid changes in shape and strong cytoplasmic streams. A new genus Brevimastigomonas is erected for the previously described species Paracercomonas anaerobica. The general morphology of cercomonad species often does not correspond with their phylogenetic position: closely related species may have a very different morphology.     

瓦氏黄颡鱼2种寄生车轮虫形态分类

采用国际上使用的"统一特定描述"和"齿体定位描述"方法对寄生在瓦氏黄颡鱼(Peleteobagrusvachelli)鳃上的适度车轮虫(Trichodina modesta)和马氏车轮虫(T.mastu)2种车轮虫的虫体外形、附着盘、齿体、辐线、中央颗粒、核器、口围绕体等形态特征进行了较为详细的描述,并分别与已报道的其他适度车轮虫、马氏车轮虫种群及相似种的形态特征进行了比较。实验证实了瓦氏黄颡鱼为适度车轮虫的寄主新纪录。     

Study on Cortinarius subgenus Telamonia section Hydrocybe in Europe, with especial emphasis on Mediterranean taxa

In this paper we have attempted to clarify the taxonomy and nomenclature of thirteen taxa of the genus Cortinarius subgenus Telamonia (sections Hydrocybe, Fraternii) well represented in the southwestern Mediterranean area of Europe (C. atrocoeruleus, C. bombycinus, C casimiri, C. contrarius, C. decipiens, C. fraternus, C. gallurae, C. hoffmannii, C. petroselineus, C. sertipes, C. subturibulosus, C. urdaibaiensis and C. vernus). To this end we have performed a combined study of morphological and molecular data (rDNA ITS sequences). The morphological analysis was carried out on 114 collections and the molecular analysis involved 31 of the 114 collections, including 11 type collections (types for C. casimiri and C. fraternus were not available). In addition, a study of spores under field emission scanning electron microscopy (FESEM) was conducted. The results of the combined analysis allowed us to asign the studied material to five species (C. casimiri s.l., C. decipiens s.l., C. gallurae, C. subturibulosus s.l. and C. vernus s.l.). Thus, all collections from more continental areas, which were originally identified as six different taxa (C. atrocoeruleus, C. contrarius, C. decipiens, C. fraternus, C. sertipes, C. flexipes fo. sertipes) corresponded to C. decipiens sensu lato, a widely distributed, genetically and morphologically variable species. Cortinarius casimiri is also found in such habitats, but it is confirmed as distinct taxon. Collections from Mediterranean sclerophyllous communities correspond to C. gallurae, C. vernus sensu lato and C. subturibulosus sensu lato. Due to close phylogenetic relationships we propose the new combinations C. casimiri var. hoffmannii (=C. decipiens var. hoffmannii non C. hoffmannii) and C. subturibulosus var. bombycinus (=C. bombycinus), and the new variety C. vernus var. nevadavernus (=C. vernus H. Lindstr. & Melot sensu auct.).     

The appendicular skeleton of Suuwasseaemilieae (Sauropoda: Flagellicaudata) from the Upper Jurassic Morrison Formation of Montana (USA)

Appendicular elements of the sauropod dinosaur Suuwasseaemilieae, from the Upper Jurassic Morrison Formation of Montana, USA, display a peculiar mix of autapomorphic and plesiomorphic features. While more similar in overall morphology to Apatosaurus than other flagellicaudatans, the coracoid of Suuwassea lacks the quadrangular shape of Apatosaurus. The humerus of Suuwassea bears a pronounced proximal tuberculum, a feature seen elsewhere only in saltasaurine titanosaurian sauropods. The rectangular proximal articular surface of the tibia is proportioned neither like Diplodocus nor Apatosaurus type specimens, although this region may be intraspecifically variable. The pes of Suuwassea possesses plesiomorphically elongate phalanges and a small, uncompressed ungual, unlike other flagellicaudatans except Dyslocosaurus. The localization of tooth marks on the pedal elements suggests that sauropod feet may have been singled out by scavengers, as has been noted for elephants.     

Comparative pollen morphology of Brachylena, Tarchananthus and two species of Tubulifloridites (Asteraceae) from the Eocene, Knysna Lignite of South Africa

Two fossil taxa Tubulifloridites antipodica and T. viteauensis recovered from the Eocene Knysna Lignite of South Africa were examined with scanning (SEM) and transmission electron microscopy (TEM). The details of their sculpturing and wall structure are similar to the same species of fossil dispersed pollen taxa recovered from southwestern Africa and South America. Fifteen species of the woody South African taxa, Brachylaena (9 species) and Tarchonanthus (6 species) were investigated with SEM and TEM. All of the taxa are tricolporate, spherical to slightly prolate, microechinate to echinate and have a bilayered columellate infrastructure, except B.ilicifolia, which has a single columellate infrastructural level with the “granularization” of the outer portion of the infrastructural layer or the inner layer of the tectum. There is a similar distribution of plesiomorphic and derived pollen characters in a number of aster subfamilies and tribes suggesting a similar evolutionary progression of pollen, and pollen wall character evolution was occurring synchronously in a variety of aster subfamilies during the middle Tertiary and that these unique pollen features may be important to the evolution and diversification of the Asteraceae.     

Spatial dynamics and morphological plasticity of common reed (Phragmites australis) and cattails (Typha sp.) in freshwater marshes and roadside ditches

Over the last decades, the abundance of common reed has significantly increased in freshwater wetlands of eastern North America, and stands of this species are now commonly alternating with stands of cattails. Since these species share many characteristics, the contact zone between common reed and cattail stands may witness strong interspecific interactions. We surveyed stand dynamics in roadside ditches and freshwater marshes at these contact zones over three years, and we examined the morphological plasticity in response to neighbors. Results indicate that common reed is clearly gaining ground over time, while cattails stands are retreating. We also found annual variability in the spatial dynamics, suggesting that other factors, such as the effect of weather conditions on water level, may affect population processes. Interspecific interactions had a detrimental effect on both common reed and cattail biomass. However, common reed showed morphological plasticity in shoot height, number of nodes, and internodes length, while cattails did not. Our observations suggest that common reed has a net competitive advantage over cattails in roadside ditches and freshwater marshes.     

基于28S, COI和Cytb基因序列的薜荔和爱玉子传粉小蜂分子遗传关系研究

薜荔和爱玉子均属于桑科榕属植物,二者为同一物种的原变种与变种的关系,早期研究认为这两种榕树与同一种传粉榕小蜂(Wiebesia pumilae (Hill))建立了稳定的互利共生关系,但近期在形态学、生态学、传粉生物学等方面对二者的研究结果表明,薜荔传粉小蜂和爱玉子传粉小蜂之间可能发生了遗传分化。实验用核糖体28SrDNAD1-D3区、线粒体Cytb及COI基因部分序列,对采自福建3个不同样地的薜荔传粉小蜂和3个不同品系的栽培爱玉子的传粉小蜂进行分析,结果表明:(1)薜荔传粉小蜂和爱玉子传粉小蜂的核糖体28S序列的碱基组成中A,T,G,C 4种含量较平均,C+G的平均含量(56%)稍高于A+T的含量(44%)。线粒体Cytb序列中A+T的含量(76.1%)明显高于C+G的含量(23.9%),COI序列中A+T的含量(71.9%)也明显高于G+C的含量(28.1%),这是膜翅目昆虫线粒体基因的普遍特征。在薜荔和爱玉子传粉小蜂的线粒体Cytb及COI基因中,密码子第三位点A+T的含量最高。(2)比较薜荔和爱玉子传粉小蜂的3种分子标记的变异范围显示,28S进化速度较Cytb及COI序列慢,比较保守,更适合科、亚科等较高分类单元的研究。薜荔传粉小蜂与爱玉子传粉小蜂之间的亲缘关系较近,采用Cytb与COI序列进行分析更为精确。(3)用Cytb及COI序列对薜荔传粉小蜂与爱玉子传粉小蜂之间的遗传距离进行分析显示,薜荔传粉榕小蜂个体间Cytb序列平均遗传距离为0.0054,爱玉子传粉小蜂个体间的Cytb遗传距离为0.0164;薜荔传粉小蜂与爱玉子传粉小蜂群体之间的Cytb序列平均遗传距离为0.1385;COI序列的薜荔传粉榕小蜂个体间遗传距离为0.0048,爱玉子传粉小蜂各样本间平均遗传距离为0.0102;薜荔传粉小蜂与爱玉子传粉小蜂群体间COI序列平均遗传距离为0.1896,两群体间的遗传距离(差异大于10%以上)明显大于群体内各样本之间的遗传距离,表明薜荔传粉小蜂与爱玉子传粉小蜂之间已经发生了很大的遗传分化,其变异水平达到了种间分化水平,即薜荔传粉小蜂与爱玉子传粉小蜂为两个不同的种。