Affinities and Historical Zoogeography of the New Zealand Short-Tailed Bat, Mystacina tuberculata Gray 1843, Inferred from DNA-Hybridization Comparisons

We carried out DNA-hybridization comparisons among representatives of the major groups of Chiroptera to determine the phylogenetic position of the New Zealand short-tailed bat, Mystacina tuberculata. All analyses confirmed the noctilionoid affinity of this species suggested by an earlier serological study, with support from taxon jackknifing and at bootstrap levels of 98% or higher. However, a specific association with Noctilio was not found in more than 13% of the bootstrapped trees. The most precise of the thermal-stability indices employed (T _m, the median melting temperature of hybridized sequences) demonstrated a sister-group relationship of Mystacina to all noctilionoids, with Noctilio the first branch within Noctilionoidea but separated from the Mystacina lineage by a very short internode. Our determination of the timing of the divergence of Mystacina from noctilionoids is 54 myrbp. This estimate is based on independent indications that extant bat lineages began to diversify in the latest Cretaceous and is much earlier than the tentative estimate of 35 myrbp inferred from serology. Even if the diversification of all living bats occurred as early as 83 myrbp, as some authors have suggested, separation of Mystacinidae—on that basis, at 66 myrbp—could not have taken place soon enough for this taxon to be isolated on New Zealand before New Zealand separated from the rest of Gondwanaland. However, any of these dates would allow for the distribution of the noctilionoid–mystacinid common ancestor in South America, Australia, and Antarctica before the final sundering of Australia from Antarctica and for the divergence of Mystacinidae as a possible result of that event. This hypothesis is supported by the presence of fossil mystacinids in early and mid-Miocene deposits at Bullock Creek and Riversleigh, Queensland, showing that Mystacinidae had been resident in Australia from at least 25–20 myrbp. The most obvious scenario explaining the presence of Mystacinidae in New Zealand is therefore fortuitous dispersal from Australia across the Tasman Sea.     

New species and new records of Xanthoparmelia (lichenized Ascomycota,Parmeliaceae) from Western Australia

The following new species of Xanthoparmelia (Parmeliaceae) are described from Western Australia: X. cranfieldii Elix, X. elevata Elix, X. kimberleyensis Elix, X. monadnockensis Elix,X. nanoides Elix, X. nortegeta Elix, X. sleei Elix and X. toolbrunupensis Elix. In addition, X. luminosa (Elix) Hale and X. victoriana Elix & J. Johnst. are reported from Western Australia for the first time.     

The Global Trade in Fresh Produce and the Vagility of Plant Viruses: A Case Study in Garlic

As cuisine becomes globalized, large volumes of fresh produce are traded internationally. The potential exists for pathogens infecting fresh produce to hitchhike to new locations and perhaps to establish there. It is difficult to identify them using traditional methods if pathogens are novel, scarce, and/or unexpected. In an attempt to overcome this limitation, we used high-throughput sequencing technology as a means of detecting all RNA viruses infecting garlic (Allium sativum L.) bulbs imported into Australia from China, the USA, Mexico, Argentina and Spain, and those growing in Australia. Bulbs tested were grown over multiple vegetative generations and all were stably infected with one or more viruses, including two species not previously recorded in Australia. Present in various combinations from 10 garlic bulbs were 41 virus isolates representing potyviruses (Onion yellow dwarf virus, Leek yellow stripe virus), carlaviruses (Shallot latent virus, Garlic common latent virus) and allexiviruses (Garlic virus A, B, C, D, and X), for which 19 complete and 22 partial genome sequences were obtained, including the first complete genome sequences of two isolates of GarVD. The most genetically distinct isolates of GarVA and GarVX described so far were identified from Mexico and Argentina, and possible scenarios explaining this are presented. The complete genome sequence of an isolate of the potexvirus Asparagus virus 3 (AV3) was obtained in Australia from wild garlic (A. vineale L.), a naturalized weed. This is first time AV3 has been identified from wild garlic and the first time it has been identified beyond China and Japan. The need for routine generic diagnosis and appropriate legislation to address the risks to primary production and wild plant communities from pathogens spread through the international trade in fresh produce is discussed.     

A preliminary account of colura (Hepaticae,Lejeuneaceae) in Australia

Four species of Colura not previously reported from Australia are: C. acroloba (Mont.) Jovet-Ast, C. ari Steph., C. conica (Sande Lac.) Goeb., and Colura queenslandica sp. nov. A key to all ten species occurring in Australia is provided. Saccate lobules of C. simplicior are described and illustrated for the first time. The name Colura sect. Lingua Jovet-Ast ex Thiers is validated.     

Hemiuridae (Digenea) from marine fishes of the southern Indian Ocean: Genus Lecithochirium Lühe, 1901 (Lecithochiriinae)

The genus Lecithochirium is briefly discussed and a provisional key to species groups is presented. The following species are described, figured and/or recorded from regions of the southern Indian Ocean: Lecithochirium genypteri from Xiphiurus capensis, Cape Province; L. magnus from Gymnothorax woodwardi and G. javanicus, Western Australia; L. parafusiforme n. sp. from G. flavimarginatus, Natal (type-host and locality) and G. woodwardi, Western Australia; L. macrorchis from G. woodwardi; Leithochirium sp. (ghanense-group?) from Platycephalus bassensis, South Australia; L. kawakawa from Euthynnus affinis and Chrysoblephus anglicus, Natal; Lecithochirium sp. (synodi-group?) from Saurida undosquamis, Natal; L. gymnapisti n. sp. from Gymnapistes marmoratus, Western Australia; L. jaffense from Trachichthodes gerrardi, South Australia and Blennioclinus brachycephalus, Cape Province; Lecithochirium sp. (group unknown) from Alectis ciliaris, Natal.     

Chulpasia and Thylacotinga, late Paleocene-earliest Eocene trans-Antarctic Gondwanan bunodont marsupials: New data from Australia

A new marsupial from the early Eocene Tingamarra Local Fauna of southeastern Queensland, Australia, is named and referred to ChulpasiaCrochet and Sigé, 1993, a genus otherwise known from early Tertiary deposits of Peru. This taxon, Chulpasia jimthorselli nov. sp., differs in upper molar morphology only in minor details from the Peruvian type species Chulpasia mattaueri and is almost identical in size. New materials referable to the Tingamarra marsupial Thylacotinga bartholomaii Archer, Godthelp and Hand are also described. Species of Chulpasia and Thylacotinga share many striking derived as well as plesiomorphic dental features that allow recognition of a new monophyletic subfamily, Chulpasiinae. Its familial relationships are in doubt, but members of the subfamily could have provided the ancestral stock for Rosendolops and other early Tertiary South American polydolopimorphian marsupials. This is the first evidence that a Gondwanan genus of therian land mammals spanned South America, Antarctica and Australia during the early Tertiary. The very close similarity between the Peruvian and Australian fossils (and suggested short time span between their stratigraphic occurrences) provides further paleontological support for a trans-Antarctic land connection between South America and Australia extending well into the early Paleogene.     

A first report of Prolinograptus packhami Rickards and Wright, 1997 from Baltica,Poland

A well-preserved isolated graptolite Prolinograptus packhami Rickards and Wright, 1997, well known from Australia, is described for the first time in Europe. The genus has now been recognized in three continents (Australia, Europe and North America). The Australian P. packhami occurs in the Neocucullograptus inexpectatus/Neocucullograptus kozlowskii biozonal interval, while the form from the Mielnik IG-1 core, Poland, appears earlier, in the Bohemograptus praecornutus Biozone. Prolinograptus, of unclear origin, is one of the least-known genera of the subfamily Linograptinae. P. packhami, along with Neodiversograptus palmeri and Prolinograptus orangensis, form a group of very diminutive specimens, with slender stipes and thecal apertures showing varying degrees of eversion. Scanning electron microscope examination revealed the presence of some micro-ornamentation on the rhabdosome surface of the Polish Prolinograptus, similar to that known in retiolitids (Retiolitidae).     

Relative pathogenicity of nuclear polyhedrosis viruses from Heliothis punctigera and Heliothis zea for larvae of Heliothis armigera and Heliothis punctigera

Laboratory bioassays indicated that the potency of a nuclear polyhedrosis virus from Heliothis zea derived from a commercial American formulation was similar to that of a naturally occurring nuclear polyhedrosis virus from H. punctigera in Australia. Both viruses exhibited high virulence for neonate larvae of H. armigera and H. punctigera, the major pest species in this genus in Australia. Hence evaluation of the virus in Australia can proceed employing virus from either H. punctigera or H. zea.     

Dragon's Paradise Lost: Palaeobiogeography,Evolution and Extinction of the Largest-Ever Terrestrial Lizards (Varanidae)

Background

The largest living lizard species, Varanus komodoensis Ouwens 1912, is vulnerable to extinction, being restricted to a few isolated islands in eastern Indonesia, between Java and Australia, where it is the dominant terrestrial carnivore. Understanding how large-bodied varanids responded to past environmental change underpins long-term management of V. komodoensis populations.

Methodology/Principal Findings

We reconstruct the palaeobiogeography of Neogene giant varanids and identify a new (unnamed) species from the island of Timor. Our data reject the long-held perception that V. komodoensis became a giant because of insular evolution or as a specialist hunter of pygmy Stegodon. Phyletic giantism, coupled with a westward dispersal from mainland Australia, provides the most parsimonious explanation for the palaeodistribution of V. komodoensis and the newly identified species of giant varanid from Timor. Pliocene giant varanid fossils from Australia are morphologically referable to V. komodoensis suggesting an ultimate origin for V. komodoensis on mainland Australia (>3.8 million years ago). Varanus komodoensis body size has remained stable over the last 900,000 years (ka) on Flores, a time marked by major faunal turnovers, extinction of the island''s megafauna, the arrival of early hominids by 880 ka, co-existence with Homo floresiensis, and the arrival of modern humans by 10 ka. Within the last 2000 years their populations have contracted severely.

Conclusions/Significance

Giant varanids were once a ubiquitous part of Subcontinental Eurasian and Australasian faunas during the Neogene. Extinction played a pivotal role in the reduction of their ranges and diversity throughout the late Quaternary, leaving only V. komodoensis as an isolated long-term survivor. The events over the last two millennia now threaten its future survival.     

Evolution of arid zone birds in Australia: leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)

The quail-thrush, Cinclosoma, include between five and seven species distributed broadly across arid and semi-arid inland Australia, mesic forests of south-eastern Australia and New Guinea. It has been suggested that the arid zone species of quail-thrush arose from forest ancestors as Australia changed from a warm wet climate to a cooler drier climate since the late-Miocene. We generated multilocus (mitochondrial ND2 and eight nuclear loci) gene and species trees with complete taxon sampling of Cinclosoma to investigate evolutionary relationships and species status of some taxa. Topologies reconstructed in congruent, highly-resolved gene trees and species trees that supported the recognition of seven species. Ancestral state reconstruction and divergence time estimates suggest that arid-adapted taxa radiated in parallel with a drying climate and changing habitat. A ‘leapfrog’ distribution in phenotypes of arid zone taxa was likely a result of ancestral retention of inconspicuous (or camouflaged) plumage patterns. A specimen-based report from 1968 of hybridization between non-sister taxa Cinclosoma castanotum and Cinclosoma marginatum was verified using molecular analysis on specimens collected at the same locality 40 years later. We discuss the implications of hybridization to the evolution of this species group.     

Three new species of Tilletia on Eriachne from north-western Australia

Three new species of Tilletia are described from species of Eriachne (Poaceae) in the arid tropics of north-western Australia. In Western Australia, T. mactaggartii sp. nov. infects E. burkittii, and T. geeringii sp. nov. infects E. festucacea. Tilletia marjaniae sp. nov. infects E. pulchella subsp. dominii in Western Australia and the Northern Territory. These species are the first records of Tilletia on Eriachne. Phylogenetic relationships of these species were inferred from internal transcribed spacer of ribosomal RNA region and large subunit ribosomal RNA gene sequences.     

Five new species of dicyemid mesozoans (Dicyemida: Dicyemidae) from two Australian cuttlefish species, with comments on dicyemid fauna composition

Five new species of dicyemid mesozoans in two genera are described from two Australian cuttlefish species, Sepia apama Gray (giant Australian cuttlefish) and S. novaehollandiae Hoyle (nova cuttlefish): Dicyema coffinense n. sp. from S. apama collected from Coffin Bay, South Australia (SA), Australia; D. koinonum n. sp. from S. apama and S. novaehollandiae collected from Gulf St Vincent (GSV) and Spencer Gulf (SG), SA, Australia; D. multimegalum n. sp. from S. apama collected from Cronulla and North Bondi, New South Wales, Australia; D. vincentense n. sp. from S. novaehollandiae collected from GSV, SA, Australia; and Dicyemennea spencerense n. sp. from S. novaehollandiae and S. apama collected from SG, SA, Australia. Totals of 51 S. apama and 27 S. novaehollandiae individuals were examined, of which all except for four S. apama were infected by at least one dicyemid species. Dicyemid parasites were also observed in host individuals that were held in tanks for 2–3 months prior to examination, including nematogen-exclusive infections, leading to questions about persistence of dicyemids after host death and the mechanism responsible for the switch between a nematogen phase and a rhombogen phase. Variations in host size, calotte shape and collection locality are explored as predictors of differences in observed composition of the parasite fauna. In particular, dicyemid parasite fauna varied with host collection locality. As these parasites are highly host-species specific, their use as biological tags to assess cephalopod population structure using a combined morphological and molecular approach is discussed. This study increases the number of dicyemid species described from Australian cephalopods from five to ten, and from 117 to 122 species described worldwide.     

Rediscovery of Multifurca stenophylla (Berk.) T.Lebel, C.W.Dunk & T.W.May comb. nov. (Russulaceae) from Australia

The genus Multifurca is recorded for the first time from Australia. Multifurca stenophylla (Berk.) T.Lebel, C.W.Dunk & T.W.May comb. nov. is described and illustrated, and a lectotype and epitype designated. The species is characterized by the association with Nothofagus and Eucalyptus, the pale yellow, concentrically zoned pileus, abundant acrid white latex which becomes pale yellow then eventually greenish, and the small basidiospores.     

Dormancy and longevity of annual ryegrass (Lolium rigidum) as affected by soil type, depth, rainfall, and duration of burial

Effects of soil type, time, depth of seed burial and rainfall pattern were investigated on the longevity of glyphosate resistant annual ryegrass (Lolium rigidum Gaudin) in the northern summer rainfall dominant grain region of Australia in a 16 month experiment conducted under polyhouse conditions. Lolium rigidum seeds placed in nylon bags were buried in pots at 5 and 10 cm depth in either Laureldale (clay) or Kirby (sandy loam) soil receiving simulated rainfall representing a Tamworth (summer) and Hamilton (winter) rainfall environment of Australia. The bags were exhumed every four months and tested for percent viable, germinable, dormant and dead seeds. In the short term (several months), factors such as soil type, rainfall and depth of burial affected the fate and condition of L. rigidum seeds and emergence pattern of seedlings. However, irrespective of treatment, all seeds lost their viability after 16 months of burial. Hence, in the longer term, L. rigidum behaviour in this summer dominant rainfall environment with different soils is likely to be similar to that where the weed occurs more commonly in the southern Mediterranean regions of Australia. Maximum emergence in the polyhouse occurred during mid autumn similar to that in the field. The results from this experiment will allow for the development of management strategies which may enhance the depletion of the soil seedbank of viable L. rigidum seeds in the shortest possible time.     

An Australian dog diagnosed with an exotic tick-borne infection: should Australia still be considered free from Hepatozoon canis?

Recent molecular and sero-surveillance studies of the tick-borne pathogen Hepatozoon canis have identified new hosts, potential vector species, and have revealed that H. canis is more widespread than previously thought. We report the first diagnosed case of canine hepatozoonosis in Australia from a Maremma Sheepdog in Sarina, Queensland. Hepatozoon canis was detected with blood smear examination and 18S rRNA sequencing. It is unknown when or how the organism was introduced into Australia, which raises questions about border biosecurity policies and the H. canis infection status of its potential vectors and hosts in Australia. Surveillance for this pathogen is required to determine whether H. canis has established in Australia.     

A mosquito parasite from a mosquito predator

The fungus Coelomomyces macleayae has been reported from treehole mosquito larvae of three Aedes subgenera in Australia, Fiji, and the United States. This fungus is now recorded for the first time from a mosquito of the genus Toxorhynchites, the large predatory larvae of which are of some importance in the naturalistic control of associated mosquito pests and vectors. A single parasitized larva of T. rutilus septentrionalis was collected from a magnolia treehole (previously used for A. triseriatus infection experiments) near West Lake, Louisiana, in September, 1971. Larval A. triseriatus and Orthopodomyia signifera were also present but were uninfected.