Vertical distribution of the methanotrophic community after drainage of rice field soil

Anoxic soils, such as flooded rice fields, are major sources of the greenhouse gas CH(4) while oxic upland soils are major sinks of atmospheric CH(4). Nevertheless, CH(4) is also consumed in rice fields where up to 90% of the produced CH(4) is oxidized in a narrow oxic zone around the rice roots and in the soil surface layer before it escapes into the atmosphere. After 1 day drainage of rice field soil, CH(4) oxidation was detected in the top 2-mm soil layers, but after 8 days drainage the zone of CH(4) oxidation extended to 8 mm depth. Simultaneously, the potential for CH(4) production decreased, but some production was still detectable after 8 days drainage throughout the soil profile. The vertical distribution of the methanotrophic community was also monitored after 1 and 8 days drainage using denaturing gradient gel electrophoresis after PCR amplification with primer sets targeting two regions on the 16S rRNA gene that are relatively specific for methylotrophic alpha- and gamma-Proteobacteria, and targeting two functional genes encoding subunits of key enzymes in all methanotrophs, i.e. the genes for the particulate methane monooxygenase (pmoA) and the methanol dehydrogenase (mxaF). Drainage stimulated the methanotrophic community. Eight days after drainage, new methanotrophic populations appeared and a distinct methanotrophic community developed. The population structure of type I and II methanotrophs was differently affected by drainage. Type II methanotrophs (alpha-Proteobacteria) were present throughout the soil core directly after drainage (1 day), and the community composition remained largely unchanged with depth. Only two new type II populations appeared after 8 days of drainage. Drainage had a more pronounced impact on the type I methanotrophic community (gamma-Proteobacteria). Type I populations were not or only weakly detected 1 day after drainage. However, after 8 days of drainage, a large diversity of type I methanotrophs were detected, altough they were not evenly distributed throughout the soil core but dominated at different depths. A distinct type I community structure had developed within each soil section between 0 and 20 mm soil depth, indicating the widening of suitable habitats for methanotrophs in the rice field soil within 1 week of drainage.     

Long‐term effects of drainage and initial effects of hydrological restoration on rich fen vegetation

Questions: What vegetational changes does a boreal rich fen (alkaline fen) undergo during a time period of 24 years after drainage? How is plant species richness affected, and what are the changes in composition of ecological groups of species? Is it possible to recover parts of the original flora by rewetting the rich fen? Which are the initial vegetation changes in the flora after rewetting? What are the major challenges for restoration of rich fen flora after rewetting? Location: Eastern central Sweden, southern boreal vegetational zone. Previously rich fen site, drained for forestry purposes during 1978–1979. The site was hydrologically restored (rewetted) in 2002. Method: Annual vegetation survey in permanent plots during a period of 28 years. Results: There were three successional stages in the vegetational changes. In the first stage there was a rapid (< 5 years) loss of rich fen bryophytes. The second step was an increase of sedges and early successional bryophytes, which was followed by an increase of a few emerging dominants, such as Molinia caerulea, Betula pubescens and Sphagnum spp. After rewetting, there are indications of vegetation recovery, albeit at slow rates. Depending on, for instance, initial species composition different routes of vegetation change were observed in the flora after drainage, although after 24 years, species composition became more homogenous and dominated by a few species with high cover. Conclusion: Major changes have occurred after changes in the hydrology (drainage and rewetting) with a severe impact on the biodiversity among vascular plants and bryophytes. Several rich fen bryophytes respond quickly to the changes in water level (in contrast to vascular plants). The recovery after rewetting towards the original rich fen vegetation is slow, as delayed by substrate degradation, dispersal limitation and presence of dominant species.     

Origin of carbon in organic matter in the Neva estuary

Analysis of the isotopic composition of tissues of representatives of zoobenthos and organic matter of seston have shown that the major part of carbon participating in the biological turnover in the ecosystem of the upper part of the Neva estuary is of terrestrial origin. Obviously, it is discharged from the lake drainage area to the Lake Ladoga–Neva–Neva estuary system. The results have revealed an important role in aquatic ecosystems of the humid zone of allochthonous humic substances creating a supplementary stock of nutrients and enhancing the productivity of ecosystems. Detailed investigations of the role of various forms of allochthonous organic compounds of terrestrial origin are necessary for elaboration of efficient measures for alleviation of eutrophication of the Neva estuary.     

The Impact of Conservation Management on the Community Composition of Multiple Organism Groups in Eutrophic Interconnected Man-Made Ponds

Ponds throughout the world are subjected to a variety of management measures for purposes of biodiversity conservation. Current conservation efforts typically comprise a combination of multiple measures that directly and indirectly impact a wide range of organism groups. Knowledge of the relative impact of individual measures on different taxonomic groups is important for the development of effective conservation programs. We conducted a field study of 28 man-made ponds, representing four management types differing in the frequency of periodic pond drainage and the intensity of fish stock management. We disentangled the relative importance of direct and indirect effects of pond management measures on the community composition of phytoplankton, zooplankton, aquatic macro-invertebrates, submerged and emergent vascular plants. With the exception of phytoplankton, pond management had strong effects on the community composition of all investigated biota. Whether management affected communities directly or indirectly through its impact on fish communities or local environmental conditions in the pond varied between organism groups. Overall, the impact of pond drainage regime and fish community characteristics on the community composition of target organism groups were more important than local environmental conditions. The majority of taxa were negatively associated with fish density, whereas multiple emergent plant species and several taxa of aquatic macro-invertebrates were positively affected by increased drainage frequency. The effects of fish community and drainage tended to be largely independent. The present study indicates that pond drainage is an important element for biodiversity conservation in eutrophicated shallow and interconnected man-made ponds.     

On the possibility for generic modeling of submarine groundwater discharge

We simulate large-scale dynamics of submarine groundwater discharge (SGD) in three different coastal aquifers on the Mediterranean Sea. We subject these aquifers to a wide range of different groundwater management conditions, leading to widely different net groundwater drainage from land to sea. The resulting SGD at steady-state is quantifiable and predictable by simple linearity in the net land-determined groundwater drainage, defined as total fresh water drainage minus groundwater extraction in the coastal aquifer system. This linearity appears to be general and independent of site-specific, variable and complex details of hydrogeology, aquifer hydraulics, streamlines and salinity transition zones in different coastal systems. Also independently of site-specifics, low SGD implies high seawater content due to seawater intruding into the aquifer and mixing with fresh groundwater within a wide salinity transition zone in the aquifer. Increasing SGD implies decreasing seawater content, decreased mixing between seawater and fresh groundwater and narrowing of the salinity transition zone of brackish groundwater in the aquifer.     

Changes in the Bacterial Community of Soil from a Neutral Mine Drainage Channel

Mine drainage is an important environmental disturbance that affects the chemical and biological components in natural resources. However, little is known about the effects of neutral mine drainage on the soil bacteria community. Here, a high-throughput 16S rDNA pyrosequencing approach was used to evaluate differences in composition, structure, and diversity of bacteria communities in samples from a neutral drainage channel, and soil next to the channel, at the Sossego copper mine in Brazil. Advanced statistical analyses were used to explore the relationships between the biological and chemical data. The results showed that the neutral mine drainage caused changes in the composition and structure of the microbial community, but not in its diversity. The Deinococcus/Thermus phylum, especially the Meiothermus genus, was in large part responsible for the differences between the communities, and was positively associated with the presence of copper and other heavy metals in the environmental samples. Other important parameters that influenced the bacterial diversity and composition were the elements potassium, sodium, nickel, and zinc, as well as pH. The findings contribute to the understanding of bacterial diversity in soils impacted by neutral mine drainage, and demonstrate that heavy metals play an important role in shaping the microbial population in mine environments.     

Drainage and Elevation as Factors in the Restoration of Salt Marsh in Britain

Intertidal restoration through realignment of flood defenses has become an important component of the U.K. coastal and estuarine management strategy. Although experimentation with recent deliberate breaches is in progress, the long‐term prognosis for salt marsh restoration can be investigated at a number of sites around Essex, southeast England where salt marshes have been reactivated (unmanaged restoration) by storm events over past centuries. These historically reactivated marshes possess higher creek densities than their natural marsh counterparts. Both geomorphology and sedimentology determine the hydrology of natural and restored salt marshes. Elevation relative to the tidal frame is known to be the primary determinant of vegetation colonization and succession. Yet vegetation surveys and geotechnical analysis at a natural marsh, where areas with good drainage exist in close proximity to areas of locally hindered drainage at the same elevation, revealed a significant inverse relationship between water saturation in the root zone and the abundance of Atriplex portulacoides, normally the physiognomic dominant on upper salt marsh in the region. Elsewhere in Essex natural and restored marshes are typified by very high sediment water contents, and this is reflected in low abundance of A. portulacoides. After a century of reestablishment no significant difference could be discerned between the vegetation composition of the storm‐reactivated marshes and their natural marsh counterparts. We conclude that vegetation composition may be restored within a century of dike breaching, but this vegetation does not provide a reliable indicator of ecological functions related to creek structure.     

秦岭田峪河流域种子植物区系研究

田峪河流域是陕西秦岭植物园的核心区,有种子植物128科,605属,1231种（不含种下等级）。区系分析表明,该流域仍以温带成分为主,占总属的70.96%,热带成分占21.13%,地中海与中亚成分占4.41%,中国特有属占3.5%,稀有濒危植物、单种属和少种属、中国特有属及木本植物均占较大比重,说明了历史起源的古老性,地理成分复杂,联系广泛,分布交错,具有明显的温带特征。     

Dried-up zone as a temporal stock of chironomid larvae: survival periods and density in a reservoir bank

The survival period, community composition and density of chironomid larvae were investigated at the reservoir bank in Yachiyoko Lake (Haji Dam), Hiroshima, Japan to verify their survivability in a dried-up zone. We define “dried-up zone” as the one that had been exposed to drought due to drawdown by evaporation and/or drainage. The larvae were collected from sediments at different altitudes along a transectional line. After larval rearing, 189 indiv. m⁻² of adults emerged even from the sediment of a 7-day drought (17.1% sedimental water content). The proportion of Tanytarsus oyamai Sasa in the community tended to be larger with dry periods, indicating that this species has a higher drought tolerance than other species. The mean density in the dried-up zone was estimated as 886.4 indiv. m⁻². Biomass is generally estimated by using the samples of only underwater sediment. These results show that some species have the potential to survive for at least one week in a dried-up zone and suggest that the biomass is likely to be highly underestimated for the entire ecosystem. A pathway of matter flow from aquatic to terrestrial ecosystems via the larvae in a dried-up zone should be taken into consideration.     

Effects of urbanization on streams of the Melbourne region, Victoria, Australia. I. Benthic macroinvertebrate communities

1. Macroinvertebrate community composition was assessed in small streams of the Melbourne region to test the effects of (a) urban density (catchment imperviousness 0–51%) and (b) stormwater drainage intensity (comparing the intensively drained metropolitan area with urban areas of the hinterland, which had open drains and some localized stormwater drainage).
2. Hinterland communities separated into two groups of sites correlating strongly with patterns of electrical conductivity (EC), basalt geology and annual rainfall. Community composition varied little in the high-EC, western group (imperviousness 0.2–1.2%), but in the eastern group it was strongly correlated with catchment imperviousness (0–12%), with lower taxon richness in more impervious catchments.
3. Metropolitan communities (imperviousness 1–51%) were all severely degraded, with high abundances of a few tolerant taxa. Community composition was poorly correlated with patterns of geology, rainfall or imperviousness. Differences between metropolitan and hinterland communities were well explained by patterns of biochemical oxygen demand and electrical conductivity, which were postulated to indicate the more efficient transport of pollutants to receiving streams by the metropolitan stormwater drainage system.
4. Degradation of macroinvertebrate community composition was well explained by urban density but intensive urban drainage increased degradation severely at even low urban densities. Quantification of relationships between imperviousness, drainage intensity and stream degradation can better inform the assessment, conservation and restoration of urban streams.     

Summer zooplankton in small rivers in relation to selected conditions

The abundance and the biodiversity of summer zooplankton in the waters of the Drawa drainage (NW Poland) were studied, as was their relation to selected environmental conditions. The conditions upstream, especially in the outlets of lakes, did not affect the zooplankton communities downstream. This was also true of tributaries which had no influence on the shape of the zooplankton communities in the main river. The number of zooplankton in the outlets of eutrophic lakes was greater than in those of mesotrophic lakes. Increased vegetation cover significantly affected mainly the crustacean communities of zooplankton. Larger amounts of zooplankton were observed in rivers where the riparian zone was not covered with vegetation, but this difference was not significant. The hydrological conditions of the rivers and the Secchi depth visibility strongly impacted the composition of the zooplankton. The influence of abiotic factors was most pronounced on the abundance of cladocerans, and least pronounced on the abundance of rotifers.     

Diversity and community composition of euglossine bee assemblages (Hymenoptera: Apidae) in western Amazonia

Tropical forests are known for their diverse insect fauna. We aimed to determine the effect and relative importance of latitude, elevation and climatic factors affecting species richness and turnover in euglossine bee assemblages along a gradient of 18° latitude from tropical rainforests to subtropical, deciduous dry forests in Peru and Bolivia. Sixteen forest sites were sampled during the dry season. Variance partitioning techniques were applied to assess the relative effects of the spatial and environmental variables on species richness and composition. Furthermore, we conducted a Species Indicator Analysis to find characteristic species for the biogeographic zones. There was a significant decrease in species richness towards the subtropical area. The best predictors of species richness were precipitation and its consequences on soil properties as well as temperature seasonality. The abundance of euglossines was most closely related to precipitation and soil-pH, but the causal links of abundance to these factors is unclear since soil-pH itself is correlated to a drastic turnover of vegetation structure. Based on the analysis of assemblage composition we propose three different assemblages with a transitional zone at the southern tropical area. The biogeographical distribution of euglossine bees along our study transect appears to be primarily related to climatic conditions and does not reflect the common subdividion of Amazonia into drainage systems.     

Patterns in diversity of anurans along an elevational gradient in the Western Ghats, South India

Aim To examine patterns in anuran species richness along an elevation gradient and identify factors that govern anuran species richness on a tropical elevational gradient. Location Sampling for anurans was carried out in Kalakad Mundanthurai Tiger Reserve (KMTR) in the southern Western Ghats, India. Methods Night‐time sampling for anuran species richness was carried out from 20 November 2004 to 20 April 2005, during the north‐east monsoon and dry seasons, using transects (50 × 2 m) and visual encounter surveys along the streams. The entire gradient was classified into thirteen 100‐m elevation zones. Sampling at the alpha (single drainage basin) level was carried out in the Chinnapul River drainage basin (40–1260 m a.s.l.) and at the gamma (landscape) level in four drainage basins. Additionally, published records were used to arrive at an empirical species richness (S) for the entire landscape. Mid‐Domain Null software was used to test for the possible influence of geometric constraints on anuran species at both the alpha and gamma levels. The influence of area under each elevation zone on empirical S was tested. The pattern in anuran species richness along the elevational gradient was investigated using: (1) species boundaries in each elevation zone and their habitat correlates, (2) abiotic factors as predictor variables, (3) mean snout vent lengths of anurans, and (4) correlation between the matrices of distance in the elevation zones based on microhabitat parameters and species composition. Cluster analysis on species presence–absence in the elevation zones was used to categorize the entire gradient into high, middle and low elevations. In these three elevation categories, pattern in composition of species was examined for endemism in Western Ghats–Sri Lanka biodiversity hotspot, uniqueness to an elevation zone, adaptations of adults and modes of breeding. Results Species richness at the alpha level increased linearly with elevation, while at the gamma level there were three peaks. Maximum species richness was observed at the highest elevation (1200 m) at both the alpha and the gamma levels. The observed patterns differed significantly from mid‐domain null predictions. The multi‐modal pattern in species richness was a consequence of overlapping species range boundaries. Soil temperature was the best single measure in explaining the majority of variation in species richness at the alpha level (r² = 0.846, P < 0.01). However, soil moisture was the best predictor when both the alpha and the gamma sites were pooled (r² = 0.774, P < 0.01). Anuran body size decreased with an increase in elevation. The highest proportions of endemic and unique species were found at high elevations (> 700 m). The proportion of arboreal anurans increased from low to high elevation. Anurans exhibiting direct development were predominantly found at high elevations. Main conclusions Geometric constraints did not influence anuran species richness along the elevational gradient. Overlapping range boundaries influenced species richness at the gamma level. Abiotic factors such as soil temperature and moisture influenced anuran species richness in the mountain range. The ‘Massenerhebung effect’ could be responsible for range restriction and endemism of anurans, differences in guilds and mode of reproduction. These findings highlight the importance of cloud forests for endemic anurans.     

Selection of a Microbial Community in the Course of Formation of Acid Mine Drainage

Microbiology - Changes in microbial community composition during formation of an acid mine drainage were studied on a model of two water reservoirs located in the Ozernoye open-cast mine for...     

Preclearing hydrology of the Western Australia wheatbelt: Target for the future

Plant and Soil - The wheatbelt of Western Australia largely corresponds to a zone of ancient drainage, characterised by highly variable rainfall, long dry summers, low hydraulic gradients,...     

Functioning of land-water ecotones in relation to nutrient cycling

Preliminary results of the study on the functioning of the littoral zone of the Gooimeer, The Netherlands, are presented. The results comprise data on the chemical composition of the open water and the aquatic littoral zone, the composition of phytoplankton, metaphyton and epiphyton. On the basis of these data, the Gooimeer littoral zone is characterized as an eutrophic land-water ecotone dominated by a few species of primary producers. Some data on characteristic processes concerning the decomposition of organic matter in rooted littoral sediments are also discussed. Enzyme activities, relevant to mineralization of macrophytic polymers, appear to be highly stimulated in the reed belt of the littoral zone. A first impression of the distribution and the efflux of oxygen in the rhizosphere of reed is given.     

Fish assemblages in temporary ponds adjacent to 'terra-firme' streams in Central Amazonia

1. The effect of habitat structural features and physicochemical characteristics of the water on the composition and richness of fish assemblages in temporary ponds near streams were examined at three spatial scales: among ponds, among streams and between drainage basins, in a ‘terra‐firme’ (not subject to long‐term flooding) forest reserve in Central Amazonia. 2. The fish assemblage in temporary ponds was composed of subsets of 18 small‐bodied species widely distributed in the reserve. The assemblages had a nested subset structure, where smaller ponds contained subgroups of the species found in larger ponds. 3. Species composition and richness in temporary ponds were similar between drainage basins, although the fish assemblages in streams differed between basins. 4. Fish assemblage structure was influenced by local factors related to habitat structure, such as pond area and depth, canopy cover and hydroperiod. Physicochemical characteristics of the water in the ponds were similar between drainage basins and had little detectable effect on the structure of pond fish assemblages. 5. No correspondence was found between the composition, richness or abundance of fishes in the ponds and in stretches of the streams adjacent to the ponds. Therefore, it is not possible to predict the composition of these temporary pond fish assemblages from the fish assemblages found in adjacent streams.     

Fine-scale biogeographic differences in the crustacean fauna of a cave system in West Virginia,USA

We examined the distribution patterns of four amphipod and one isopod crustaceans in 23 cave stream segments within a subterranean drainage basin. The patterns indicate that invasion history is a strong determinant of the species' distributions. One set of species likely has invaded the cave system from the zone of interstitial water, and thus is distributed mainly in headwater streams throughout the drainage. One species probably invaded through upstream migration from the resurgence of the cave system, and thus is strongly associated with the larger, higher-order streams. The effect of interspecific interactions on the patterns of distribution is not apparent at our scale of analysis.     

Water balance and pattern of root water uptake by a Quercus coccifera L. evergreen srub

Summary The water balance of a Quercus coccifera evergreen scrub was studied over 7 consecutive years. This scrub grows on hard limestone. Soil water content was measured with a neutron meter. Calibration curves were calculated from (1) the thermal neutron macroscopic cross-sections of soil (<2-mm fraction) and rock samples, and (2) the profile of wet bulk density measured with a subsurface gamma-ray gauge. The annual and seasonal patterns of actual evapotranspiration and of deep drainage were calculated using field-measured drainage characteristics. The soil water content data were used to compute water uptake rates and pattern for the root zone over a 4-month drying period. The 906 mm of mean annual precipitation yielded 603 mm of actual evapotranspiration (AET) and 296 mm of drainage. No drainage occured with precipitation less than 578 mm. The average AET values for the months from April to September were 57, 74, 89, 96, 70, and 42 mm respectively. It was found that Quercus coccifera consumed considerable quantities of water from the soil-rock complex. Roots could extract 270 mm of water in the first 470 cm of soil. The results showed a gradual downward shift of the zone of maximum root water uptake as the soil dried.     

Temporal and altitudinal variations in the attached algae of mountain streams in Colorado

Attached algae were examined from eight sites in Central Colorado streams (five sites on St. Vrain Creek and three on the Snake River) between June and November, 1995. The sites ranged in elevation from 1600 m to 3500 m a.s.l.(plains zone to alpine zone). Seasonal variation in algal communities were qualified in forms of species composition and abundance (cell counts and biovolumes). The Ochiai coefficient of similarity was used to estimate degree of similarity between communities at different times, on different streams, and at different locations on the same stream. The composition of communities across streams for alpine and foothills zones was very close, but montane communities differed greatly across streams (similarity < 0.1). Temporal variability of attached algae was almost absent in the alpine zone, but was high in other zones. The composition of the alpine community in August developed downstream with a temporal shift: October in the montane and foothills zones, November in the plains zone. This revised version was published online in July 2006 with corrections to the Cover Date.