A radically non-morphemic approach to bidirectional syncretism

This paper addresses the question of how certain kinds of overlapping syncretisms in inflectional paradigms can be accounted for that Baerman et al. (Language 80:807–824, 2005) refer to as convergent/divergent bidirectional syncretisms (based on earlier work by Stump, Inflectional morphology, 2001). Bidirectional syncretism strongly resists accounts in terms of standard rules of exponence (or similar devices) that correlate inflection markers with (often underspecified) morpho-syntactic specifications (such rules are used in many morphological theories; e.g., Anderson, A-morphous morphology, 1992; Halle and Marantz in The view from building, pp. 111–176, 1993; Aronoff, Morphology by itself, 1994; Wunderlich in Yearbook of morphology 1995, pp. 93–114, 1996; and Stump, Inflectional morphology, 2001). The reason is that it is difficult to capture overlapping distributions by natural classes. In view of this, rules of referral have been proposed to derive bidirectional syncretism (Stump, Inflectional morphology, 2001; Baerman et al. (Language 80:807–824, 2005)). In contrast, I would like to pursue the hypothesis that systematic instances of overlapping syncretism ultimately motivate a new approach to inflectional morphology—one that fully dispenses with the assumption that morphological exponents are paired with morpho-syntactic feature specifications (and that therefore qualifies as radically non-morphemic): First, rules of exponence are replaced with feature co-occurrence restrictions (FCRs; Gazdar et al., Generalized Phrase Structure Grammar, 1985). For phonologically determined natural classes of exponents, FCRs state incompatibilites with morpho-syntactic feature specifications. Second, marker competition is resolved by a principle of Phonology-driven Marker Selection (PMS). PMS takes over the role of the Specificity (Blocking, Elsewhere, Panini) Principle of standard analyses. Empirically, the main focus is on Bonan declension; the analysis is subsequently extended to Gujarati conjugation and Latin o-declension, with further remarks on bidirectional syncretism in other inflectional paradigms.     

The gender assignment pattern of French nouns

Gender exponence in underived French nouns is particularly opaque. In this paper, we identify two subsystems of gender assignment: monogendered nouns, bi-gendered nouns; we show what they share and where they diverge. We show how the notorious floating final consonants of the language are handled in each subsystem for purposes of gender exponence. Our analysis and proposals develop in two steps: (a) we elaborate on the internal structure of √P, arguing that it is more richly articulated than had been assumed in previous work; (b) we propose that a gender feature sitting on n probes into its complement √P for valuation. Our proposal opens a range of selectional options of √P by n. These selectional options along with the probing device they feed, are shown to account for the French evidence.     

Plural exponence in the Nez Perce DP: a DM analysis

This paper analyzes two patterns of number marking in the DP in Nez Perce (Sahaptian) within the framework of Distributed Morphology. The first involves under-realization of plural on nouns. Number has classically been understood as a feature inherent to nouns, rather than to adjectives that modify them. In Nez Perce, however, only a small set of nouns show number morphology, whereas number morphology is highly productive on adjectival modifiers. Adjectives in fact may realize the plural more than once per word—an instance of multiple exponence. I show that the puzzle of under-realization for nouns can be solved through conditioned allomorphy, providing new evidence for the presence of gender features on n (Lowenstamm 2007; Kramer 2014). The puzzle of multiple exponence (over-realization) for adjectives can be solved through Local Dislocation (Embick and Noyer 2001) combined with very late insertion of reduplicative content (Haugen 2008, 2011), demonstrating one way the DM architecture may produce multiple exponence without recourse to dedicated mechanisms.     

Investigations on markedness,syncretism and zero exponence in morphology

The inventories of subject clitics in northern Italian varieties are affected by widespread morphological changes. One of these changes is syncretism. In addition, many dialects display defective paradigms where some of the clitics are missing. The clitics that undergo syncretism and the clitics that are missing tend to be the same: the first person singular and plural, the second plural, and, less frequently, the third plural. Working in the framework of Distributed Morphology, I argue that these clitics are the target of markedness constraints that trigger repair operations leading to either syncretism or the removal of forms from a paradigm. In particular, I propose two such operations: one is feature deletion, which deletes a marked feature specification. This operation is always followed by feature insertion, which inserts the opposite value of the deleted feature specification (this operation leads to syncretism). The other one is obliteration, which deletes a morphosyntactic node and leads to underspecified morphosyntactic representations (this operation leads to paradigmatic gaps). I investigate how these operations affect the morphological exponents in PF, creating syncretisms and gaps in exponence.     

Mechanistic investigation of platinum-catalysed hydroformylation of propene: A density functional study

The mechanism of hydroformylation of propene in the presence of both cis-PtH(SnCl₃)(PH₃)₂ and trans-PtH(SnCl₃)(PH₃)₂ catalysts has been investigated. A density functional study has been carried out for all of the elementary steps of the catalytic cycle, i.e. for the alkene coordination, for its insertion into the Pt-H bond, carbon monoxide activation and its subsequent insertion into the Pt-alkyl bond. Finally, the product forming step, the dihydrogen activation and aldehyde elimination have been investigated.It has been found that the regioselectivity of hydroformylation is determined in the olefin insertion step. The computed ratio of the linear regioisomer, n-butanal is predicted to be 83% when solvation corrections were employed, being in very good agreement with the experimental result. Among the elementary steps the hydrogenolysis has been found to be the slowest followed by the migratory carbon monoxide insertion step. Due to the crucial role of the trichlorostannato ligand the electronic effects of SnCl₃ has been analysed employing the charge decomposition analysis (CDA), the natural bond orbital (NBO) and the atoms in molecules (AIM) methods.     

Defining ‘periphrasis’: key notions

We examine the notion of ??(inflectional) periphrasis?? within the framework of Canonical Typology, and argue that the canonical approach allows us to define a logically coherent notion of periphrasis. We propose a set of canonical criteria for inflectional morphology and a set of canonical criteria for functional syntax, that is, syntactic constructions which include functional elements and which express grammatical features. We argue that canonical periphrasis is exemplified in our theoretical space of possibilities whenever a cell in a (canonically morphological) inflectional paradigm (??feature intersection??) is expressed by a multiword construction which respects the canonical properties of functional syntax. We compare our canonically-based approach with the approach of other authors, notably, Ackerman & Stump (2004), who argue for three sufficient conditions for a construction to be regarded as periphrastic: feature intersection, non-compositionality and distributed exponence. We argue that non-compositionality and distributed exponence, while sometimes diagnostic of periphrasis on a language-particular basis, do not constitute canonical properties of periphrasis. We also examine crucial but neglected syntactic aspects of periphrastic constructions: recursion of periphrases and headedness of periphrastic constructions. The approach we propose allows us to distinguish between constructions in actual languages which approximate the ideal of canonical periphrasis to various degrees without committing us to a categorical distinction between periphrastic and non-periphrastic constructions. At the same time we can capture the intuition that there is in some languages a distinct identifiable set of multiword constructions whose principal role is to realize grammatical features.     

Oxidative addition of methyl iodide to [Rh(CH3COCHCOCH3)(CO)(P(OCH2)3CCH3)]

The reaction rate of the oxidative addition and the following CO insertion step of methyl iodide with [Rh(acac)(CO)(P(OCH₂)₃CCH₃)] is determined. The key finding is that while [Rh(acac)(CO)(P(OCH₂)₃CCH₃)] oxidatively adds methyl iodide ca 300 times faster than the Monsanto catalyst, the CO insertion step is much slower. However, the rate-determining step of the oxidative addition reaction of the phosphorus-containing acetylacetonato-rhodium(I) complex, the carbonyl insertion step, is still in the same order or faster than the rate-determining oxidative addition step of iodomethane to [Rh(CO)₂I₂]⁻.     

Word construction: tracing an optimal path through the lexicon

Optimal Construction Morphology (OCM) is a new construction-based theory of morphology that selects the optimal combination of lexical constructions to best achieve a target meaning. OCM combines elements of realizational and item-based morphological theories. It is realizational, in that words are constructed in response to a given meaning target. It is incremental in that words are built from lexical structures, one layer at a time. It is optimizing in that, in response to a meaning target, the morphological grammar dips into the lexicon, building and assessing morphological constituents incrementally until the word being built optimally matches the target meaning. In this paper OCM is shown to illuminate a vexing optimization puzzle confronted by all theories of morphology: why is redundancy in morphology rejected as ungrammatical in some situations (“blocking”), but absolutely required in others (“multiple/extended exponence”)? The OCM analysis incorporates two notions of morphological strength that have been proposed in the literature: stem type, on a scale from root (weakest) to word (strongest), and exponence strength, related to productivity and parsability.     

The surface structure of a complex substrate revealed by enzyme kinetics and Freundlich constants for α-amylase interaction with the surface of starch

Background

Starch is a main source of carbohydrate in human diets, but differences are observed in postprandial glycaemia following ingestion of different foods containing identical starch contents. Such differences reflect variations in rates at which different starches are digested in the intestine. In seeking explanations for these differences, we have studied the interaction of α-amylase with starch granules. Understanding this key step in digestion should help with a molecular understanding for observed differences in starch digestion rates.

Methods

For enzymes acting upon solid substrates, a Freundlich equation relates reaction rate to enzyme adsorption at the surface. The Freundlich exponent (n) equals 2/3 for a liquid-smooth surface interface, 1/3 for adsorption to exposed edges of ordered structures and 1.0 for solution–solution interfaces. The topography of a number of different starch granules, revealed by Freundlich exponents, was compared with structural data obtained by differential scanning calorimetry and Fourier transform infrared spectroscopy with attenuated total internal reflectance (FTIR-ATR).

Results

Enzyme binding rate and FTIR-ATR peak ratio were directly proportional to n and Δ_gelH was inversely related to n. Amylase binds fastest to solubilised starch and to granules possessing smooth surfaces at the solid–liquid interface and slowest to granules possessing ordered crystalline surfaces.

Conclusions

Freundlich exponents provide information about surface blocklet structures of starch that supplements knowledge obtained from physical methods.

General Significance

Nanoscale structures at the surface of starch granules influence hydrolysis by α-amylase. This can be important in understanding how dietary starch is digested with relevance to diabetes, cardiovascular health and cancer.     

Carabelli's trait revisited: An examination of mesiolingual features at the enamel-dentine junction and enamel surface of Pan and Homo sapiens upper molars

Carabelli’s trait is a morphological feature that frequently occurs on the mesiolingual aspect of Homo sapiens upper molars. Similar structures also referred to as Carabelli’s trait have been reported in apes and fossil hominins. However, the morphological development and homology of these mesiolingual structures among hominoids are poorly understood. In this study, we employ micro-computed tomography to image the enamel-dentine junction (EDJ) and outer enamel surface (OES) of Pan (n = 48) and H. sapiens (n = 52) upper molars. We investigate the developmental origin of mesiolingual features in these taxa and establish the relative contribution of the EDJ and enamel cap to feature expression. Results demonstrate that mesiolingual features of H. sapiens molars develop at the EDJ and are similarly expressed at the OES. Morphological variation at both surfaces in this taxon can satisfactorily be assessed using standards for Carabelli’s trait developed by the Arizona State University Dental Anthropology System (ASUDAS). Relative to H. sapiens, Pan has an even greater degree of correspondence in feature expression between the EDJ and OES. Morphological manifestations in Pan molars are not necessarily limited to the protocone and are best characterized by a lingual cingulum that cannot be captured by the ASUDAS. Cusp-like structures, similar to those seen in marked Carabelli’s trait expressions in H. sapiens, were not found in Pan. This study provides a foundation for further analyses on the evolutionary history of mesiolingual dental traits within the hominoid lineage. It also highlights the wealth of morphological data that can be obtained at the EDJ for understanding tooth development and for characterizing tooth crown variation in worn fossil teeth.     

Neopolyploidy in Spartina pectinata Link: 1. Morphological analysis of tetraploid and hexaploid plants in a mixed natural population

Prairie cordgrass has been reported as a multi-polyploidy species having three cytotypes: tetra- (2n?=?4x?=?40), hexa- (2n?=?6x?=?60), and octoploid (2n?=?8x?=?80). A mixed-ploidy population comprising tetraploids and hexaploids was recently found at a single location in Illinois. However, adaptation and morphological differences between tetra- and hexaploids occurring in natural conditions as well as the contact zones of these cytotypes have yet to be determined. In this study, the cytotypes of 147 individuals of prairie cordgrass collected across the contact zone (4x?+?6x) were determined by flow cytometry using somatic G1 nuclei, and the results were confirmed by chromosome counts. Nineteen morphological characteristics were compared between the cytotypes. Tetra- and hexaploid plants have 2C genome sizes of 1.57 and 2.36?pg with chromosome counts of 40 and 60, respectively. This increase in polyploidy resulted in a greater variability of morphological expression in Illinois prairie cordgrass. Substantial differences in the flowering time, stomatal size, and plant morphological characteristics were observed between tetra- and hexaploids. The results indicate that the increasing of ploidy level in prairie cordgrass resulted in increased plant size in ploidy mixtures. The recent event of ploidy mixtures in prairie cordgrass natural populations offers unique opportunities for studying the formation and establishment of neopolyploidy.     

Electron tomography and cryo-SEM characterization reveals novel ultrastructural features of host-parasite interaction during Chlamydia abortus infection

Chlamydia (C.) abortus is a widely spread pathogen among ruminants that can be transmitted to women during pregnancy leading to severe systemic infection with consecutive abortion. As a member of the Chlamydiaceae, C. abortus shares the characteristic feature of an obligate intracellular biphasic developmental cycle with two morphological forms including elementary bodies (EBs) and reticulate bodies (RBs). In contrast to other chlamydial species, C. abortus ultrastructure has not been investigated yet. To do so, samples were fixed by high-pressure freezing and processed by different electron microscopic methods. Freeze-substituted samples were analysed by transmission electron microscopy, scanning transmission electron microscopical tomography and immuno-electron microscopy, and freeze-fractured samples were analysed by cryo-scanning electron microscopy. Here, we present three ultrastructural features of C. abortus that have not been reported up to now. Firstly, the morphological evidence that C. abortus is equipped with the type three secretion system. Secondly, the accumulation and even coating of whole inclusion bodies by membrane complexes consisting of multiple closely adjacent membranes which seems to be a C. abortus specific feature. Thirdly, the formation of small vesicles in the periplasmic space of RBs in the second half of the developmental cycle. Concerning the time point of their formation and the fact that they harbour chlamydial components, these vesicles might be morphological correlates of an intermediate step during the process of redifferentiation of RBs into EBs. As this feature has also been shown for C. trachomatis and C. pneumoniae, it might be a common characteristic of the family of Chlamydiaceae.     

The theoretical status of <Emphasis Type="Italic">ren’yoo</Emphasis> (stem) in Japanese verbal morphology

This paper contributes to the debate over the necessity of autonomous morphology in the sense of Aronoff (1994) by discussing Japanese verbs. The issue centers on the theoretical status of the so-called ren’yoo form, which the traditional approach says is selected morphologically by particular suffixes. I claim that there is no need to resort to morphological selection to obtain the correct form of Japanese verbs. Instead, the presence of [i], which appears in the ren’yoo form, is predicted either phonologically (as an epenthesis) or syntactically (as the infinitive marker). The evidence comes form modern Japanese as well as from premodern Japanese, and I argue that in diachrony as well, there is no evidence that autonomous morphology is playing active roles.     

Seasonal acclimatization in metabolic rate of the fan-fingered gecko,Ptyodactylus hasselquistii (Reptilia: Gekkonidae)

The resting metabolic rate of the fan-fingered gecko Ptyodactylus hasselquistii of various body masses was determined in relation to ambient temperatures ranging from 20 to 35°C during winter and summer acclimatization. Oxygen consumption (ml g⁻¹ h⁻¹) decreased with increasing mass at each temperature. The intraspecific exponents of body mass in relation to metabolic rate ranged from 0.62 to 0.79. Winter-acclimatized geckos had significantly lower metabolic rates than summer-acclimatized geckos at different temperatures, especially at low temperature (20°C). The pattern of acclimatization exhibited by P. hasselquistii may conserve energy during inactivity in winter and make activity more easily achieved during active seasons.     

Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila

Fatty acyl-AMP ligase (FAAL) is a new member of a family of adenylate-forming enzymes that were recently discovered in Mycobacterium tuberculosis. They are similar in sequence to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, while FACLs perform a two-step catalytic reaction, AMP ligation followed by CoA ligation using ATP and CoA as cofactors, FAALs produce only the acyl adenylate and are unable to perform the second step. We report X-ray crystal structures of full-length FAAL from Escherichia coli (EcFAAL) and FAAL from Legionella pneumophila (LpFAAL) bound to acyl adenylate, determined at resolution limits of 3.0 and 1.85 Å, respectively. The structures share a larger N-terminal domain and a smaller C-terminal domain, which together resemble the previously determined structures of FAAL and FACL proteins. Our two structures occur in quite different conformations. EcFAAL adopts the adenylate-forming conformation typical of FACLs, whereas LpFAAL exhibits a unique intermediate conformation. Both EcFAAL and LpFAAL have insertion motifs that distinguish them from the FACLs. Structures of EcFAAL and LpFAAL reveal detailed interactions between this insertion motif and the interdomain hinge region and with the C-terminal domain. We suggest that the insertion motifs support sufficient interdomain motions to allow substrate binding and product release during acyl adenylate formation, but they preclude CoA binding, thereby preventing CoA ligation.     

Testing the packing rule across the twig–petiole interface of temperate woody species

Theories that incorporate the area-preserving rule of Leonardo da Vinci predict that the sum of the cross-sectional lumen area of xylem conduits (vessels or tracheids) is constant across different levels of branching. If true, this rule obtains the packing rule, according to which (1) vessel cross-sectional lumen area (A) will negatively and isometrically scale to vessel number per unit area (N) and (2) the distal to proximal vessel diameter ratio (DR?=?D _n+1/D _n ) should scale as the ?1/2 power of the distal to proximal vessel number ratio (NR?=?N _n+1/N _n ), i.e., DR?=?NR^?1/2. Using data collected from the terminal twigs and the petioles of 60 temperate (27 evergreen and 33 deciduous) woody species from southwestern China, we determined the scaling relationships for A versus N and for DR versus NR. Analyses of the data revealed contrasting scaling exponents and normalization constants for A versus N and for DR versus NR and no consistent trend across the two species groupings or between the two organ types (as predicted by the area-preserving and packing rules). These results caution against applying these rules ubiquitously to all species or to different organ types (even on the same plant).     

Structural insights into substrate specificity of crotonase from the n-butanol producing bacterium Clostridium acetobutylicum

Crotonase from Clostridium acetobutylicum (CaCRT) is an enzyme that catalyzes the dehydration of 3-hydroxybutyryl-CoA to crotonyl-CoA in the n-butanol biosynthetic pathway. To investigate the molecular mechanism underlying n-butanol biosynthesis, we determined the crystal structures of the CaCRT protein in apo- and acetoacetyl-CoA bound forms. Similar to other canonical crotonase enzymes, CaCRT forms a hexamer by the dimerization of two trimers. A crystal structure of CaCRT in complex with acetoacetyl-CoA revealed that Ser69 and Ala24 to be signature residues of CaCRT, which results in a distinct ADP binding mode wherein the ADP moiety is bound at a different position compared with other crotonases. We also revealed that the substrate specificity of crotonase enzymes is determined by both the structural feature of the α3 helix region and the residues contributing the enoyl-CoA binding pocket. A tight formed α3 helix and two phenylalanine residues, Phe143 and Phe233, aid CaCRT to accommodate crotonyl-CoA as the substrate. The key residues involved in substrate binding, enzyme catalysis and substrate specificity were confirmed by site-directed mutagenesis.     

Atlantic moonfishes: independent pathways of karyotypic and morphological differentiation

Fish of the genus Selene, known as lookdowns or moonfish, are one of the most morphologically derived groups of the family Carangidae, whose phylogenetic relationships are still largely unknown. In this study, we discuss karyoevolutionary aspects of three representatives of this genus from the Western Atlantic: Selene brownii (2n = 48; FN = 48), Selene setapinnis (2n = 46; FN = 48), and Selene vomer (2n = 48; FN = 50). Their body patterns were also investigated and compared to one another and in relation to two other species of different genera. Two mechanisms of karyotypic evolution seem to have acted in the diversification of this genus, namely pericentric inversions and centric fusions. Mapping of rDNA sequences showed that chromosome pairs bearing 5S rDNA sites are similar, whereas those bearing 18 rDNA sites are morphologically distinct while apparently also exhibiting interspecies synteny. Although the nucleolar organizer-bearing chromosomes are extremely efficient cytotaxonomic markers among Selene species, others cytogenetic patterns of these species are relatively conserved. Hybridization with telomeric probes (TTAGGG)_n did not exhibit interstitial telomeric sites (ITS), especially in S. setapinnis, where, along with a reduction in diploid number, a large metacentric pair derived from centric fusion is present. Data obtained by geometric morphometrics enable a clear morphological distinction among the three species, as well as in relation to two other species of the genus Caranx and Oligoplites. Data obtained suggest that morphologic evolution in Selene species was primarily dissociated from visible changes that occurred at the chromosomal level.     

Gastrointestinal helminths in brown trout (Salmo trutta Linnaeus, 1758) captured in Galician rivers (NW Spain)

Specimens of Salmo trutta (n = 613) captured by local anglers in different rivers in Galicia (NW Spain) during the 2015 fishing season (15 March–15 August) were examined. In total 1479 adult helminths were recovered from the gastrointestinal tracts of 221 fish. Moreover, the microscopic observation of the sediments obtained, previous diphasic concentration, revealed the presence of helminth eggs in 485 trout specimens. The following species were identified by morphological and molecular analysis: Crepidostomum metoecus (8.97%) (Trematoda); Salmonema ephemeridarum (16.97%), Raphidascaris acus (9.46%) and Pseudocapillaria sp. (2.12%) (Nematoda); and Echinorhynchus truttae (8.48%) (Acanthocephala). The prevalence, mean intensity and mean abundance of each helminth species were determined in relation to size/age of the fish. The helminth infracommunity comprised a maximum of four species and the species richness was S = 5. The biological cycles of most of the helminth species recovered are dependent on benthic macroinvertebrate fauna, which, in turn, is influenced by the water quality. Therefore, any changes that take place in the aquatic ecosystem (due to anthropogenic activities or climate change) may be reflected in the helminth composition.