Ten-year seed bank and vegetation dynamics of a tidal freshwater marsh

A decade-long examination was made of recruitment and establishment in a tidal freshwater high marsh along the Delaware River. Over the 10 yr of the study, seed bank, field seedlings, and vegetation showed variable patterns and significant year-to-year fluctuations. Patterns of each species were unique, perhaps the result of specific germination and/or establishment requirements and seedling morphology. For a given species there was little correlation among seed bank, seedling, and vegetation patterns, and germination success did not guarantee establishment. Species diversity showed significant year-to-year fluctuation, but there was no trend, and perennials did not change in importance during the 10-yr period. Because four annual species (Bidens laevis, Cuscuta gronovii, Impatiens capensis, and Polygonum arifolium) composed over 90% of the seed bank and field seedlings, and 58-89% ( = 70 ± 4) of the cover, community dynamics were dependent on seedling recruitment. For a given species life history stages (seed bank, field seedlings, and vegetation) were not predictable over the temporal scale of a decade. It is predicted, however, that if hydrology remains unchanged, the same suite of species will persist. The importance of the parasite Cuscuta gronovii is noteworthy.     

Review of ammonia-oxidizing bacteria and archaea in freshwater ponds

Aquaculture ponds are simple and unique ecosystems, which are affected intensively by human activities. In this mini-review, we focus our attention on the distribution and community diversity of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in pond water and sediments, as well as the possible ecological mechanisms involved. Moreover, we discuss the possibility of increasing the activity of ammonia-oxidizing organisms in order to improve the water quality in aquaculture ponds. Compared with eutrophic lakes, the significantly higher ammonia concentration in pond water does not lead to significantly higher AOB levels, and the abundance of AOA is too low to quantify accurately. Similar to eutrophic lakes, high abundances of AOA and AOB are present in the surface sediments at the same time, where the oxidation of ammonia is performed mainly by AOB. AOB and AOA exhibit significant seasonal variations in aquaculture ponds, which are affected by the temperature, pH, and dissolved oxygen. The dominant AOB species are Nitrosomonas and the Nitrosospira lineage in pond environments. Nitrososphaera or members of the Nitrososphaera-like cluster dominate the AOA species in surface sediments, whereas the Nitrosopumilus cluster dominates the deeper sediments. AOB and AOA can be enriched on artificial substrates suspended in the pond water, thereby potentially improving the water quality.

     

Ecophysiological characterization of ammonia-oxidizing archaea and bacteria from freshwater

Aerobic biological ammonia oxidation is carried out by two groups of microorganisms, ammonia-oxidizing bacteria (AOB) and the recently discovered ammonia-oxidizing archaea (AOA). Here we present a study using cultivation-based methods to investigate the differences in growth of three AOA cultures and one AOB culture enriched from freshwater environments. The strain in the enriched AOA culture belong to thaumarchaeal group I.1a, with the strain in one enrichment culture having the highest identity with "Candidatus Nitrosoarchaeum koreensis" and the strains in the other two representing a new genus of AOA. The AOB strain in the enrichment culture was also obtained from freshwater and had the highest identity to AOB from the Nitrosomonas oligotropha group (Nitrosomonas cluster 6a). We investigated the influence of ammonium, oxygen, pH, and light on the growth of AOA and AOB. The growth rates of the AOB increased with increasing ammonium concentrations, while the growth rates of the AOA decreased slightly. Increasing oxygen concentrations led to an increase in the growth rate of the AOB, while the growth rates of AOA were almost oxygen insensitive. Light exposure (white and blue wavelengths) inhibited the growth of AOA completely, and the AOA did not recover when transferred to the dark. AOB were also inhibited by blue light; however, growth recovered immediately after transfer to the dark. Our results show that the tested AOB have a competitive advantage over the tested AOA under most conditions investigated. Further experiments will elucidate the niches of AOA and AOB in more detail.     

Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh

Microbial iron oxidation is an integral part of the iron redox cycle in wetlands. Nonetheless, relatively little is known about the composition and ecology of iron-oxidizing communities in the soils and sediments of wetlands. In this study, sediment cores were collected across a freshwater tidal marsh in order to characterize the iron-oxidizing bacteria (FeOB) and to link their distributions to the geochemical properties of the sediments. We applied recently designed 16S rRNA primers targeting Gallionella-related FeOB by using a nested PCR-denaturing gradient gel electrophoresis (DGGE) approach combined with a novel quantitative PCR (qPCR) assay. Gallionella-related FeOB were detected in most of the samples. The diversity and abundance of the putative FeOB were generally higher in the upper 5 to 12 cm of sediment than in deeper sediment and higher in samples collected in April than in those collected in July and October. Oxygen supply by macrofauna appears to be a major force in controlling the spatial and temporal variations in FeOB communities. The higher abundance of Gallionella-related FeOB in April coincided with elevated concentrations of extractable Fe(III) in the sediments. Despite this coincidence, the distributions of FeOB did not exhibit a simple relationship to the redox zonation inferred from the geochemical depth profiles.     

Variation in wetland seed banks across a tidal freshwater landscape

Almost nothing is known about landscape-level variation in seed bank composition across complexes of hydrologically connected wetlands. We examined species composition of seed and spore banks in three habitats of tidal freshwater wetlands (marshes, swamp hollows, and swamp hummocks) along 48 km of tributaries throughout the tidal freshwater portions of the Nanticoke River watershed (Maryland and Delaware). Taxa and seedling density decreased with increasing distance upstream in the swamp hollows and hummocks, but increased or remained constant proceeding upstream in the marshes. Species rarefaction curves indicated equal taxa richness (28) between marshes and swamp hummocks at 175 individuals, with lower richness in swamp hollows (19). However, communities in swamp hollows were patchier and had an estimated total taxa richness of 52, similar to the marshes (50) and higher than swamp hummocks (41). Coefficients of variation for seedling emergence densities (136-180%) were greater than those of published seed bank studies conducted at smaller spatial scales in tidal freshwater marshes (36-117%). Our literature searches suggest that ours is the first study to document significant spatial trends in seed bank diversity and density across a wetland landscape.     

Interactions between soil physicochemistry and belowground biomass production in a freshwater tidal marsh

Plant and Soil - The success of tidal freshwater wetland restoration is typically gauged by the re-establishment of characteristics found in reference marshes. Although plant species composition...     

Vegetation changes in the freshwater tidal marsh of the Delaware estuary

We examined the areal extent and changes in thefreshwater tidal wetlands along a 56.4 km and a80.6 km reach of the Delaware River between Chester,Pa. and Trenton, N.J. Most of the remainingfreshwater tidal wetlands of the Delaware River arefound along tributaries which drain the coastal plainof New Jersey. We identified polygons of marsh, mud,and open water using color infrared aerial photographyobtained at low tide in 1977 and 1978. Marsh polygonswere classified into either high marsh or low marshaccording to the dominant visual signature of thevegetation of each polygon, and placed in a geographicinformation system for subsequent analysis. The totalarea of marsh within the two reaches totaled 1416 ha,of which 71% was high marsh and 29% low marsh. Asite re-examination in 1997 and 1998 of marsh arearepresenting 32% of the total marsh area revealedthat, while the total area of wetland appears to haveremained constant, high marsh vegetation along thelower reaches of the tributaries has been replaced bylow marsh vegetation. The fraction of the sample thatwas low marsh increased from 9% in 1977–78 to 34% in1997/8.     

Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments

To elucidate the geomicrobiological factors controlling nitrification in salt marsh sediments, a comprehensive approach involving sediment geochemistry, process rate measurements, and quantification of the genetic potential for nitrification was applied to three contrasting salt marsh habitats: areas colonized by the tall (TS) or short (SS) form of Spartina alterniflora and unvegetated creek banks (CBs). Nitrification and denitrification potential rates were strongly correlated with one another and with macrofaunal burrow abundance, indicating that coupled nitrification-denitrification was enhanced by macrofaunal burrowing activity. Ammonia monooxygenase (amoA) gene copy numbers were used to estimate the ammonia-oxidizing bacterial population size (5.6 x 10(4) to 1.3 x 10(6) g of wet sediment(-1)), which correlated with nitrification potentials and was 1 order of magnitude higher for TS and CB than for SS. TS and CB sediments also had higher Fe(III) content, higher Fe(III)-to-total reduced sulfur ratios, higher Fe(III) reduction rates, and lower dissolved sulfides than SS sediments. Iron(III) content and reduction rates were positively correlated with nitrification and denitrification potential and amoA gene copy number. Laboratory slurry incubations supported field data, confirming that increased amounts of Fe(III) relieved sulfide inhibition of nitrification. We propose that macrofaunal burrowing and high concentrations of Fe(III) stimulate nitrifying bacterial populations, and thus may increase nitrogen removal through coupled nitrification-denitrification in salt marsh sediments.     

Accelerated microbial organic matter mineralization following salt-water intrusion into tidal freshwater marsh soils

The impact of salt-water intrusion on microbial organic carbon (C) mineralization in tidal freshwater marsh (TFM) soils was investigated in a year-long laboratory experiment in which intact soils were exposed to a simulated tidal cycle of freshwater or dilute salt-water. Gas fluxes [carbon dioxide (CO₂) and methane (CH₄)], rates of microbial processes (sulfate reduction and methanogenesis), and porewater and solid phase biogeochemistry were measured throughout the experiment. Flux rates of CO₂ and, surprisingly, CH₄ increased significantly following salt-water intrusion, and remained elevated relative to freshwater cores for 6 and 5 months, respectively. Following salt-water intrusion, rates of sulfate reduction increased significantly and remained higher than rates in the freshwater controls throughout the experiment. Rates of acetoclastic methanogenesis were higher than rates of hydrogenotrophic methanogenesis, but the rates did not differ by salinity treatment. Soil organic C content decreased significantly in soils experiencing salt-water intrusion. Estimates of total organic C mineralized in freshwater and salt-water amended soils over the 1-year experiment using gas flux measurements (18.2 and 24.9 mol C m^?2, respectively) were similar to estimates obtained from microbial rates (37.8 and 56.2 mol C m^?2, respectively), and to losses in soil organic C content (0 and 44.1 mol C m^?2, respectively). These findings indicate that salt-water intrusion stimulates microbial decomposition, accelerates the loss of organic C from TFM soils, and may put TFMs at risk of permanent inundation.     

Variation in insect herbivory across a salt marsh tidal gradient influences plant survival and distribution

Herbivore damage and impact on plants often varies spatially across environmental gradients. Although such variation has been hypothesized to influence plant distribution, few quantitative evaluations exist. In this study I evaluated patterns of insect herbivory on an annual forb, Atriplex patula var. hastata, across a salt marsh tidal gradient, and performed experiments to examine potential causes and consequences of variation in herbivory. Damage to plants was generally twice as great at mid-tidal elevations, which are more frequently inundated, than at higher, less stressful, elevations at five of six surveyed sites. Field herbivore assays and herbivore preference experiments eliminated the hypothesis that plant damage was mediated by herbivore response to differences in host plants across the gradient. Alternately, greater herbivore densities in the mid-marsh, where densities of an alternate host plant (Salicornia europaea) were high, were associated with greater levels of herbivory on Atriplex, suggesting spillover effects. The effect of insect herbivores on host plant performance varied between the two sites studied more intensively. Where overall herbivore damage to plants was low, herbivory had no detectable effect on plant survival or seed production, and plant performance did not significantly differ between zones. However, where herbivore damage was high, herbivores dramatically reduced both plant survival (>50%) and fruit production (40-70%), and their effects were stronger in the harsher mid-marsh than the high marsh. Thus herbivores likely play a role in maintaining lower Atriplex densities in mid-marsh. Overall, these results suggest that variation in herbivore pressure can be an important determinant of patterns of plant abundance across environmental gradients.     

Production and standing crop patterns of giant cutgrass (Zizaniopsis miliacea) in a freshwater tidal marsh

Summary Growth cycles and production of aboveground and belowground giant cutgrass (Zizaniopsis miliacea (Michx.) Doell and Asch.) were studied in a freshwater tidal marsh along the lower Savannah River near Savannah, Georgia, USA. Minimum aboveground live standing crop (142 g/m²) occurred in March with a steady increase thereafter to an October maximum (1,039 g/m²) followed by a rapid decline. Giant cutgrass aboveground net primary production was approximately 1,530 g/m²/yr. Rhizomes (358 g/m²/yr) and roots (160 g/m²/yr) yielded an annual belowground production of 518 g/m²/yr. Total above and belowground annual net production was estimated at 2,048 g/m²/yr.Present Address: Institute of Ecology, University of Georgia, Athens, Georgia, 30602, USA     

Differential effects of chronic and acute simulated seawater intrusion on tidal freshwater marsh carbon cycling

Tidal freshwater ecosystems experience acute seawater intrusion associated with periodic droughts, but are expected to become chronically salinized as sea level rises. Here we report the results from an experimental manipulation in a tidal freshwater Zizaniopsis miliacea marsh on the Altamaha River, GA where diluted seawater was added to replicate marsh plots on either a press (constant) or pulse (2 months per year) basis. We measured changes in porewater chemistry (SO₄^2?, Cl^?, organic C, inorganic nitrogen and phosphorus), ecosystem CO₂ and CH₄ exchange, and microbial extracellular enzyme activity. We found that press (chronic) seawater additions increased porewater chloride and sulfate almost immediately, and ammonium and phosphate after 2–4 months. Chronic increases in salinity also decreased net ecosystem exchange, resulting in reduced CO₂ and CH₄ emissions from press plots. Our pulse treatment, designed to mimic natural salinity incursion in the Altamaha River (September and October), temporarily increased porewater ammonium concentrations but had few lasting effects on porewater chemistry or ecosystem carbon balance. Our findings suggest that long-term, chronic saltwater intrusion will lead to reduced C fixation and the potential for increased nutrient (N, P) export while acute pulses of saltwater will have temporary effects.     

Syntrophic-archaeal associations in a nutrient-impacted freshwater marsh

AIMS: Evaluation of the composition, distribution and activities of syntrophic bacteria and methanogens in soils from eutrophic and low nutrient regions of a freshwater marsh, and to compare these results with those obtained from a similar study in the Florida Everglades. METHODS AND RESULTS: Culture dependent and independent approaches were employed to study consortia of syntrophs and methanogens in a freshwater marsh. Methanogenesis from butyrate oxidation was fourfold higher in microcosms containing soil from eutrophic regions of the marsh than from low nutrient regions. Propionate was oxidized in eutrophic microcosms at lower rates than butyrate and with lower yields of methane. Sequence analysis of 16S rRNA gene clone libraries from DNA extracted from microcosms and soils revealed differences such that the dominant restriction fragment length polymorphism (RFLP) phylotypes (representing 82-88% of clone libraries) from eutrophic soils clustered with fatty acid oxidizing Syntrophomonas spp. The four dominant RFLP phylotypes (representing 11-24%) from microcosms containing soils from low nutrient regions were sequenced, and clustered with micro-organisms having the potential for fermentative and syntrophic metabolism. Archaeal 16S rRNA sequence analysis showed that methanogens from eutrophic regions were from diverse families, including Methanomicrobiaceae, Methanosarcinaceae, and Methanocorpusculaceae, but clone libraries from low nutrient soils revealed only members of Methanosarcinaceae. CONCLUSIONS: These findings indicate that syntroph-methanogen consortia differed with nutrient levels in a freshwater marsh. SIGNIFICANCE AND IMPACT OF THE STUDY: This is one of few studies addressing the distribution of fatty acid consuming-hydrogen producing bacteria (syntrophs) and their methanogenic partners in wetland soils, and the effects of eutrophication on the ecology these groups.     

Spatial and temporal dynamics of floating and drift-line seeds at a tidal freshwater marsh on the Potomac River, USA

The dispersal of seeds through hydrochory can be an important driver of community dynamics and play an integral role in the colonization of restored wetlands. We assessed sources of seeds on the shoreline and in adjacent waters of the Potomac River to Dyke Marsh in Virginia. Drift-line samples were taken at 40 random points four times during 2005–2006, and water surface net trawling took place on the Potomac River from 2003–2005 using six, 200-m transects around the perimeter of the marsh. Seed supply through hydrochory and species richness was low at Dyke Marsh when compared to other regional tidal freshwater marshes. We discovered distinct temporal patterns, where high species richness and seed density were found in the fall for the water trawl samples but in the spring for the drift-line samples. High fall dispersal in the water trawls may exist owing to peak plant senescence and seed release, while high seed germination in the spring along shorelines may arise due to sufficient cold stratification of marsh seeds.     

Causes of reduced clutch size in a tidal marsh endemic

We tested three hypotheses of clutch size variation in two subspecies of the swamp sparrow (Melospiza georgiana georgiana and M. g. nigrescens). Swamp sparrows follow the pattern of other estuarine endemics, where clutch size is smaller among tidal salt marsh populations (M. g. nigrescens) than their closest inland relatives (M. g. georgiana). Our results support predation risk and temperature, but not adult survival, as explanations of this pattern in swamp sparrows. Coastal nests were twice as likely to fail as inland nests, and parental activity around the nest site was positively related to clutch size at both sites. When brood size was controlled for, coastal adults visited nests less often and females vocalized less frequently during visits than inland birds, which may decrease nest detectability to predators. Coastal parents waited longer than inland birds to feed offspring in the presence of a model nest predator, but there was no difference in their response to models of predators of adults, as would be expected if coastal birds possessed increased longevity. Additionally, coastal females laid more eggs than inland females over a single season, following a within-season bet-hedging strategy rather than reducing within-season investment. Coastal territories experienced ambient air temperatures above the physiological zero of egg development more often, and higher temperatures during laying correlated with smaller clutches and increased egg inviability among coastal birds. Similar effects were not seen among inland nests, where laying temperatures were generally below physiological zero. Both subspecies showed an increase in hatching asynchrony and a decrease in apparent incubation length under high temperatures. Coastal individuals, however, showed less hatching asynchrony overall despite higher temperatures. Both air temperatures during laying and predation risk could potentially explain reduced clutch size in not only coastal plain swamp sparrows, but also other tidal marsh endemics.     

Epiphyton as a niche for ammonia-oxidizing bacteria: detailed comparison with benthic and pelagic compartments in shallow freshwater lakes

Next to the benthic and pelagic compartments, the epiphyton of submerged macrophytes may offer an additional niche for ammonia-oxidizing bacteria in shallow freshwater lakes. In this study, we explored the potential activities and community compositions of ammonia-oxidizing bacteria of the epiphytic, benthic, and pelagic compartments of seven shallow freshwater lakes which differed in their trophic status, distribution of submerged macrophytes, and restoration history. PCR-denaturing gradient gel electrophoresis analyses demonstrated that the epiphytic compartment was inhabited by species belonging to cluster 3 of the Nitrosospira lineage and to the Nitrosomonas oligotropha lineage. Both the ammonia-oxidizing bacterial community compositions and the potential activities differed significantly between compartments. Interestingly, both the ammonia-oxidizing bacterial community composition and potential activity were influenced by the restoration status of the different lakes investigated.