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1.
Dinuclear dichloro complexes [Ru(C6H6)Cl2]2, [Ru(p-MeC6H4 iPr)Cl2]2, [Ru(1,2,4,5-C6H2Me4)Cl2]2, and [Ru(C6Me6)Cl2]2 react in ethanol with p-bromothiophenol to give the corresponding cationic complexes [Ru2(C6H6)2(p-S-C6H4-Br)3]+ (1), [Ru2(p-MeC6H4 iPr)2(p-S-C6H4-Br)3]+ (2), [Ru2(1,2,4,5-C6H2Me4)2(p-S-C6H4-Br)3]+ (3), and [Ru2(C6Me6)2(p-S-C6H4-Br)3]+ (4), which can be isolated in quantitative yield as their chloride salts. X-ray structure analysis of these complexes shows that the nature of the arene ligand influences the folding of the p-S-C6H4-Br units. In 1, where the less hindered arene ligand is present, the three phenyl rings of the thiolato units are not constrained to a coplanar arrangement, whereas in 4 the C6Me6 forces the three phenyl rings to be in perfect planarity. Complexes 2 and 3 show an intermediary arrangement.  相似文献   

2.
《Inorganica chimica acta》2004,357(2):571-580
Treatment of the ligand N-(2-mercaptoethyl)-3,5-dimethylpyrazole with [Pd(CH3COO)2]3 and reaction of [PdCl(μ-med)]2 with pyridine (py) or triphenylphosphine (PPh3) in the presence of AgBF4 produced the following complexes: [Pd(CH3COO)(μ-med)]2, [Pd(μ-med)(py)]2(BF4)2 and [Pd(μ-med)(PPh3)]2(BF4)2. Similar reactions carried out with 2,2-bipyridine (bpy) or 1,3-bis(diphenylphosphino)propane (dppp) produced [Pd(μ-med)(bpy)]x(BF4)x (x=1 or 2) and [Pd(μ-med)(dppp)]x(BF4)x (x=1 or 2). Treatment of [Pd(μ-med)(bpy)]x(BF4)x with [PdCl2(CH3CN)2] produced [Pd3Cl2(μ-med)2(bpy)2](BF4)2. Treatment of [Pd(μ-med)(dppp)]x(BF4)x with [PdCl2(CH3CN)2] produced a mixture of [Pd(μ-Cl)(dppp)]2(BF4)2 and [Pd(μ-med)2(dppp)]2+. X-ray crystal structures of [Pd(μ-med)(PPh3)]2(BF4)2 · 2CH3CN and [Pd(μ-med)(bpy)]2(BF4)2 · 0.5CH3OH are presented.  相似文献   

3.
The reaction of the Tc(II) nitrosyl complex (Bu4N)[Tc(NO)Cl4] with di-(2-picolyl)(NEt)amine in methanol yields the neutral complex [Tc(NO)Cl(py-N(Et)-py)]. The reaction of the Tc(I) nitrosyl complex [Tc(NO)Cl2(HOMe)(PPh3)2] with this tridentate ligand yields cationic [Tc(NO)Cl(py-N(Et)-py)(PPh3)]Cl. These two complexes have been structurally characterized. The reaction of [Tc(NO)Cl2(HOMe)(PPh3)2] with the tetradentate ligand 1,4-bis-(2-pyridylmethyl)-1,4-diazobutane yields a mixture of products including cationic [Tc(NO)Cl(py-NH-NH-py)]Cl and cationic [Tc(NO)Cl(PPh3)(py-NH-NH∼py)]Cl, with a pyridyl terminus left dangling.  相似文献   

4.
A new approach to ligand design for the sequestration of metal-oxo cations has been called stereognostic coordination chemistry, in that the ligand incorporates a traditional Lewis base coordination to the metal center and a hydrogen bond donor to interact with the oxo group. This paper reports the synthesis of ligands that are more rigid and sterically predisposed to bind the targeted UO22+ cation. These are the tripod ligands tris-N,N′,N′′-[2-(2-carboxy-phenoxy)ethyl]-1,4,7-triazacyclononane bis-hydrochloride (ETAC · 2HCl) and tris-N,N′,N′′-[2-(2-carboxy-4-decyl-phenoxy)ethyl]-1,4,7-triazacyclononane tris-hydrochloride (DETAC · 3HCl), which chelate uranyl with a tris-carboxylate coordination sphere and provide a hydrogen bond donor through a protonated amine on the triazacyclononane macrocycle to interact with one uranyl oxo atom. Structural models predict that upon uranyl binding the hydrogen bond donor must point directly towards the oxo atom, enforcing a stereognostic interaction. Both ETAC and DETAC chelate the uranyl ion; DETAC is a powerful extractant and will quantitatively extract uranyl into an organic phase at pH 1.9 and above. The extraction coefficient is estimated to be 1014 in neutral aqueous conditions. Vibrational spectra of 18O labeled UO22+ have been used to probe the stereognostic coordination to uranyl utilizing hydrogen bonding.  相似文献   

5.
The present paper describes a new tripodal ligand containing imidazole and pyridine arms and its first cis-[RuIII(L)(Cl)2]ClO4 complex (1). The crystal structure of 1 shows RuIII in a distorted octahedral geometry, in which two chloride ions, cis-positioned to each other, are coordinated besides the four nitrogen atoms from the tetradentate ligand L. The cyclic voltammogram of 1 exhibits three redox processes at −67, +73 and +200 mV versus SCE, which are attributed to the RuIII/RuII couple in the cis-[RuIII(L)(Cl)2]+, cis-[RuII(L)(H2O)(Cl)]+ and cis-[RuII(L)(H2O)2]2+, respectively. After chemical reduction (Zn(Hg) or EuII) only the cis-[RuII(L)(H2O)2]2+ species is observed in the cyclic voltammetry. Complex 1 absorbs at 470 nm (ε=1.4×103 mol−1 L cm−1), 335 nm (ε=7.9×103 mol−1 L cm−1), 301 nm (ε=6.7×103 mol−1 L cm−1) and 264 nm (ε=9.9×103 mol−1 L cm−1), in water solution (CF3COOH, 0.01 mol L−1, μ=0.1 mol L−1 with CF3COONa). Spectroelectrochemical experiments show a decrease of the bands at 335 and 301 nm, which are attributed to LMCT transitions from the chloride to the RuIII center and the appearance of a broad band at 402 nm ascribed to MLCT transition from the RuII center to the pyridine ligand. The lability of the water ligands in the cis-[RuII(L)(H2O)2]2+ species has been investigated using the auxiliary ligand pyrazine. Reactions in the presence of stoichiometric and excess of pyrazine yield the same species, cis-[RuII(L)(H2O)(pz)]2+, which exhibits a reversible redox process at 493 mV versus SCE and absorbs at 438 nm (ε=5.1×103 mol−1 L cm−1) and 394 nm (ε=4.2×103 mol−1 L cm−1). Experiments performed with a large excess of pyrazine gave a specific rate constant k1=(2.8±0.5)×10−2 M−1 s−1, at 25 °C, in CF3COOH, 0.01 mol L−1, μ=0.1 mol L−1 (with CF3COONa).  相似文献   

6.
A new zirconium complex containing amidinate, guanidinate and amide ligand sets with formula Zr[(CyN)2CMe][(CyN)2CNMe2](NMe2)2 (1) (Cy = cyclohexyl) was synthesized by the insertion of the 1,3-dicyclohexylcarbodiimide moiety into the bond of zirconium and dimethylamido group. Characterization of the complex 1 was achieved using elemental analysis, 1H and 13C NMR spectra and single crystal X-ray diffraction. The molecular structure of the complex 1 revealed that the coordination geometry around the zirconium is a distorted pseudo-octahedron. The metal center is surrounded by the four nitrogen atoms of two bidentate amidinate and guanidinate ligands positioned cis to each other and two cis-NMe2 groups.  相似文献   

7.
Developing ligands capable of carbohydrate recognition has become increasingly important as the essential roles of glycoproteins and glycolipids in a diverse array of cellular signaling, pathophysiology, and immune response mechanisms are elucidated. Effective ligands for the glycan portion of glycoproteins and glycolipids are needed for pre‐enrichment proteomics strategies, as well as for the purification of individual glycoproteins from complex biological milieu encountered both in biochemistry research and bio‐pharmaceutical development. In this work, we developed a carbohydrate specific affinity ligand for glycoprotein purification using a one‐pot, multi‐component synthesis reaction (Ugi synthesis) and an amine‐functionalized benzoboroxole moiety immobilized on agarose beads. Benzoboroxoles are unique boronic acid derivatives that have recently been found to bind specifically to the cis‐diol groups of carbohydrates at physiological pH, with superior affinity to any other Wulff‐type boronic acid. The solid‐phase affinity ligand developed herein specifically binds the carbohydrate moiety of the glycoprotein glucose oxidase, as well as a fluorescein isothiocyanate‐dextran, as shown through deglycosylation binding studies. Additionally, the ligand is able to purify glucose oxidase from crude Escherichia coli lysate, at physiological pH, equitably to commercially available boronic acid‐functionalized agarose beads that required alkaline pH conditions. Thus, this affinity ligand is a marked improvement on current, commercially available boronic acid‐based glycoprotein enrichment matrices and has the potential to exhibit high individual glycoprotein specificity because of the additional functional groups available for variation on the Ugi scaffold. Copyright © 2015 John Wiley & Sons, Ltd.  相似文献   

8.
A number of bimetallic complexes of a macrocyclic binucleating ligand containing both six- and four-coordinate binding sites have been prepared in order to try to reproduce the behavior of certain metalloproteins. It was found that two-metal oxidation is severely impeded in bimetallic systems. It is postulated that the mutual deactivation of metal oxidation is principally the result of unfavorable ligand conformational adjustments which occur after the first metal is oxidized. It is shown that when these conformational restraints are removed, two-metal oxidations are possible.  相似文献   

9.
Four new coordination networks based on dipyridyl linkages 2,6-(N,N′-di(4-pyridyl)amino)pyridine (dpap) or 1,3-bis(4-pyridyl)propane (bpp) and different dicarboxylates have been synthesized and structurally characterized. Using dpap to react with two different dicarboxylates, maleic acid (H2mal) and 4,4′-sulfonyldibenzoate (H2sdba), respectively, two different two-dimensional (2D) coordination polymers of Cd(II), [Cd(dpap)(mal)]n (1) and {[Cd(dpap)(sdba)] · 2H2O}n (2) were obtained. Compound 1 features a 42-membered bimetallic macrocyclic structural motif which is extended by mal groups to form a 2D network. In the case of 2, two different layers can be achieved depending on the conformation of sdba. The layer has a (8210) net topology with Cd as nodes and dpap, sdba bridges as the connectors. The overall structure of {[Mn(dpap)(sdba)] · 1.5H2O}n (3) similar to that of 2 despite the presence of different metal ions. When dpap was replaced by bpp to react with Co(NO3)2 · 6H2O, another 1D coordination polymer, {[Co(bpp)(H2O)4] · sdba}n(4) was constructed. The 1D chains join sdba to make an overall 3D supramolecular architecture by hydrogen-bonding interactions ( (22), (12)). The Cd coordination polymers exhibit strong solid-state luminescence emission at room temperature. Thermal stability of these crystalline materials has been explored by thermogravimetric analysis of mass loss.  相似文献   

10.
In this study, the influences of initial settings, i.e. initial conformations, configurations and docking parameters, on docking results were investigated. The conformations used in the study were generated by the CAMDAS program. After the conformational search calculations, five structures were selected from the conformer groups according to their conformation energies and root mean square deviations against crystal structures; for example, the lowest energy conformer, as well as the closest and farthest conformers to the crystal structure, was retrieved. Several docking parameter settings were used (default, high speed, generating 50 poses). In this study, docking calculations were conducted using the GOLD, eHiTS, AutoDock, AutoDock vina, FRED and DOCK programs. The success rates of GOLD, eHiTS and FRED were better than those of AutoDock, AutoDock vina and DOCK. The docking results using the farthest conformations were worse than those obtained using other conformations, indicating that some conformation search for the ligand molecule should be performed before the docking calculations.  相似文献   

11.
Kobayashi S  Aoyama N  Manabe K 《Chirality》2003,15(2):124-126
Catalytic asymmetric allylation of aldehydes with allyltributyltin in aqueous media has been realized using combinations of cadmium bromide and chiral diamine ligands. These ligands were found to accelerate the reactions significantly.  相似文献   

12.
Addition of (Me3SiNHCH2CH2)2NH (H3[N3(TMS)]) or (Me3SiNH-o-C6H4)2NH (H3[ArN3(TMS)]) to a solution of TaMe5 yields [N3(TMS)]TaMe2 or [ArN3(TMS)]TaMe2, respectively. An X-ray study of [ArN3(TMS)]TaMe2 showed it to have an approximate trigonal bipyramidal structure in which the two methyl groups are in equatorial positions and the triamido ligand is approximately planar. Addition of (C6F5NHCH2CH2)2NH (H3[N3(C6F5)]) to TaMe5 yields first [(C6F5NCH2CH2)2NH]TaMe3, which then decomposes to [(C6F5NCH2CH2)2N]TaMe2. An X-ray study of [(C6F5NCH2CH2)2N]TaMe2 shows it to be approximately a trigonal bipyramid, but the C6F5 rings are oriented so that they lie approximately in the TaN3 plane and two ortho fluorines interact weakly with the metal. Trimethylaluminum attacks the central nitrogen atom in [N3(TMS)]TaMe2 to give [(Me3SiNCH2CH2)2NAlMe3]TaMe2, an X-ray study of which shows it to be a trigonal bipyramidal species similar to the first two structures, except that the C-Ta-C bond angle is approximately 30° smaller (106.6(12)°). Addition of B(C6F5)3 to [(C6F5NCH2CH2)2NH]TaMe3 yields {[(C6F5NCH2CH2)2NH]TaMe2}+ {B(C6F5)3Me}, the structure of which most closely resembles that of [(Me3SiNCH2CH2)2NAlMe3]TaMe2 in that the C-Ta-C angle is 102.0(6)°. The C6F5 rings in {[(C6F5NCH2CH2)2NH]TaMe2}+ are turned roughly perpendicular to the TaN3 plane, i.e. ortho fluorines do not interact with the metal in this molecule.  相似文献   

13.
Copper(II) coordination complexes of the neutral ligand, tris(3-tert-butyl-5-methyl-1-pyrazolyl)methane (L2′), i.e. the copper(II) nitrato complexes [Cu(L2′)(NO3)][Cu(NO3)4]1/2 (1) and [Cu(L2′)(NO3)](ClO4) (2) and the copper(II) chloro complex [Cu(L2′)(Cl)](ClO4) (3), and its anionic borate analogue, hydrotris(3-tert-butyl-5-methyl-1-pyrazolyl)borate (L2), i.e. the copper(II) nitrato complex [Cu(L2)(NO3)] (4) and the copper(II) chloro complex [Cu(L2)(Cl)] (5), were synthesized in order to investigate the influence of ligand framework and charge on their structure and physicochemical properties. While X-ray crystallography did not show any definitive trends in terms of copper(II) atom geometry in four-coordinate copper(II) chloro complexes 3 and 5, different structural trends were observed in five-coordinate copper(II) nitrato complexes 1, 2, and 4. These complexes were also characterized by spectroscopic techniques, namely, UV-Vis, ESR, IR/far-IR, and X-ray absorption spectroscopy.  相似文献   

14.
The reaction of CpCo(CO)2 with elemental sulfur yielded the new sulfur-rich compound Cp4Co43-S)(μ3-S2)3 (1). The structure of 1 contains a Co4S7 core composed of three μ3-disulfido ligands and one μ3-sulfido ligand. PEt3 abstracts sulfur from 1 to yield the new compound Cp4Co43-S)33-S2) (2). Compound 2 is also a cage compound, but it contains three μ3-sulfido ligands and only one μ3-disulfido ligand. Compound 2 is converted back to 1 by reaction with elemental sulfur. The selenium homologue Cp4Co43-Se)33-Se2) (3) was obtained from the reaction of CpCo(CO)2 with elemental selenium. The structures of 1, 2 and 3 were determined by single-crystal X-ray diffraction analyses.  相似文献   

15.
Caberoy NB  Zhou Y  Li W 《The EMBO journal》2010,29(23):3898-3910
Tubby and tubby-like protein 1 (Tulp1) are newly identified phagocytosis ligands to facilitate retinal pigment epithelium (RPE) and macrophage phagocytosis. Both proteins without classical signal peptide have been demonstrated with unconventional secretion. Here, we characterized them as novel MerTK ligands to facilitate phagocytosis. Tulp1 interacts with Tyro3, Axl and MerTK of the TAM receptor tyrosine kinase subfamily, whereas tubby binds only to MerTK. Excessive soluble MerTK extracellular domain blocked tubby- or Tulp1-mediated phagocytosis. Both ligands induced MerTK activation with receptor phosphorylation and signalling cascade, including non-muscle myosin II redistribution and co-localization with phagosomes. Tubby and Tulp1 are bridging molecules with their N-terminal region as MerTK-binding domain and C-terminal region as phagocytosis prey-binding domain (PPBD). Five minimal phagocytic determinants (MPDs) of K/R(X)(1-2)KKK in Tulp1 N-terminus were defined as essential motifs for MerTK binding, receptor phosphorylation and phagocytosis. PPBD was mapped to the highly conserved 54 amino acids at the C-terminal end of tubby and Tulp1. These data suggest that tubby and Tulp1 are novel bridging molecules to facilitate phagocytosis through MerTK.  相似文献   

16.
A new approach to predicting the ligand-binding sites of proteins was developed, using protein-ligand docking computation. In this method, many compounds in a random library are docked onto the whole protein surface. We assumed that the true ligand-binding site would exhibit stronger affinity to the compounds in the random library than the other sites, even if the random library did not include the ligand corresponding to the true binding site. We also assumed that the affinity of the true ligand-binding site would be correlated to the docking scores of the compounds in the random library, if the ligand-binding site was correctly predicted. We call this method the molecular-docking binding-site finding (MolSite) method. The MolSite method was applied to 89 known protein-ligand complex structures extracted from the Protein Data Bank, and it predicted the correct binding sites with about 80-99% accuracy, when only the single top-ranked site was adopted. In addition, the average docking score was weakly correlated to the experimental protein-ligand binding free energy, with a correlation coefficient of 0.44.  相似文献   

17.
As an extension of our study on the H-cluster model compounds, a series of diiron propanediselenolate (PDS)-type models have been successfully synthesized. Reaction of diselenol HSe(CH2)3SeH with Fe3(CO)12 in THF (tetrahydrofuran) at reflux gave the parent model compound [μ-Se(CH2)3Se-μ]Fe2(CO)6 (1) in 48% yield. Further reaction of 1 with PPh3 or PPh2H in the presence of Me3NO in MeCN at room temperature afforded the phosphine-monosubstituted model compounds [μ-Se(CH2)3Se-μ]Fe2(CO)5(L) (2, L = PPh3; 3, L = PPh2H) in 76% and 68% yields, respectively. Similarly, the N-heterocyclic carbene IMes-monosubstituted model compound [μ-Se(CH2)3Se-μ]Fe2(CO)5(IMes) (4) could be prepared in 46% yield by reaction of imidazolium salt IMes · HCl with n-BuLi followed by treatment of the resulting IMes ligand with 1 in THF at room temperature. Compounds 1-4 were fully characterized by elemental analysis and various spectroscopic methods. While the structures of 1-4 were further confirmed by X-ray crystallography, the comparative study of 1 and its analog [μ-S(CH2)3S-μ]Fe2(CO)6 demonstrates that 1 is a better catalyst for TsOH proton reduction to hydrogen under electrochemical conditions.  相似文献   

18.
One-dimensional {[Cu2(dppa)2(4,4′-bipy)(CH3CN)2](BF4)2 · 2CH3CN}n (1), two-dimensional {[Cu2(dppa)(4,4′-bipy)2(CH3CN)2](BF4)2 · 4CH2Cl2 · 4H2O}n (2) and three-dimensional {[Cu2(dppa)(4,4′-bipy)3](BF4)2 · 2CH2Cl2 · 3CH3CN · 3H2O}n (3) polymeric complexes have been prepared by self-assembly of [Cu(MeCN)4]BF4, Ph2PCCPPh2 (dppa) and 4,4′-bipyridine (4,4′-bipy) in a 2:2:1, 1:1:1 and 2:2:3 molar ratio, respectively. The structures of 1-3, determined by an X-ray diffraction study, reveal a linear spring-like architecture for 1, a planar honeycomb grid for 2 and an interlocked adamantoid network for 3.  相似文献   

19.
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20.
Bis(pyridine) complexes of molybdenum and tungsten, [M(η3-allyl)Cl(CO)2(NC5H5)2] (M=Mo; 3-Mo, M=W; 3-W), reacted with an equimolar amount of lithiated amidinate, Li[(PhN)2CR] (R=H; 4a-Li, R = CH3; 4b-Li), to yield corresponding amidinato(pyridine) complexes, [M(η3-allyl){(PhN)2CR}(CO)2(NC5H5)] (M=Mo, R=H; 5a-Mo, M=Mo, R=CH3; 5b-Mo, M=W, R=H; 5a-W), as a yellow solid. The dissociation of pyridine ligand from the central metal in complexes 5a was observed in a polar solvent such as acetonitrile. In these cases, although the formation of amidinato(acetonitrile) complexes, [M(η3-allyl){(PhN)2CH}(CO)2(NCMe)] (M=Mo; 6a-Mo, M=W; 6a-W), was suggested spectroscopically, isolation of complexes 6a was not successful but the re-formation of pyridine complexes 5a was observed. In the reactions of complexes 5a with PEt3 and with P(OMe)3, the substitution reactions easily took place to give [M(η3-allyl){(PhN)2CH}(CO)2(PEt3)] (M=Mo; 7a-Mo, M=W; 7a-W) and [M(η3-allyl){(PhN)2CH}(CO)2{P(OMe)3}] (M=Mo; 8a-Mo, M=W; 8a-W), respectively. These complexes were characterized spectroscopically as well as, in some cases, by X-ray analyses.  相似文献   

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