细菌耐受噬菌体感染的分子机制研究进展

噬菌体是能感染细菌的病毒。为了抵抗噬菌体的感染,细菌进化出多种抵抗噬菌体感染的机制,这些机制的阐析极大地促进了基因编辑领域的发展,同时也为噬菌体治疗的开展奠定了基础。本文就细菌针对噬菌体感染的各个环节所进行的抵抗及其分子机制进行了简要综述,同时讨论了这些防御系统的存在对细菌自身的影响,分析了当前细菌耐受噬菌体机制研究存在的局限性,并对未来研究进行了展望。     

细菌与噬菌体相互抵抗机制研究进展

噬菌体作为一种侵染细菌的病毒,能够特异性识别宿主细菌。近年来,抗生素的过度使用导致耐药细菌的出现,噬菌体有望成为对抗耐药细菌的新武器。在细菌与噬菌体长期共进化过程中,二者都演化出一系列抵御策略。本文从抑制噬菌体吸附、阻止噬菌体DNA进入、切割噬菌体基因组、流产感染以及群体感应对噬菌体的调控等方面,对细菌抵抗噬菌体的机制以及噬菌体应对细菌的策略进行了综述,同时还列举了细菌和噬菌体相互抵抗机制的检测方法,以期为噬菌体在细菌控制中的应用以及探究细菌抵抗噬菌体的机制提供理论依据。     

噬菌体与细菌相互作用的分子机制研究进展

噬菌体与细菌是自然界中存在最广泛的两类微生物,两者在群体水平、个体水平以及分子水平上均存在复杂的相互作用关系.细菌能够影响溶原性噬菌体的溶原-裂解决策,而被噬菌体感染的细菌基因表达谱也会受到噬菌体影响,使宿主菌的代谢、应激、抵抗力、毒性等多种性状发生改变.现从细菌和噬菌体两者的角度,分别综述细菌抵抗噬菌体感染以及噬菌体...     

噬菌体治疗中细菌对噬菌体的抗性

抗生素治疗尽管有几十年有效治疗的历史,但随着越来越多耐/抗药性细菌的出现,细菌对抗生素的抗药性已成为一个大问题。噬菌体治疗是使用噬菌体作为抗菌剂来感染细菌株系,它一直是人们倡导的一个很有前途的常规抗生素治疗的替代方案。然而,由于细菌与噬菌体的协同进化中,细菌可以通过多种机制获得对噬菌体的抗性。因此,人们对噬菌体治疗抱有期望的同时,也关注噬菌体治疗长时间的使用之后,是否会与抗生素使用之后结果相类似,导致抗性细菌病原菌感染的治疗困难。综述了细菌-噬菌体协同进化中细菌病原菌对有感染能力的噬菌体是否会产生抗性,及其在噬菌体治疗中影响的争论,并展望了噬菌体治疗的潜在前景。     

细菌的噬菌体感染抗性机制

噬菌体广泛存在于生态环境中。细菌在与噬菌体长期的共进化过程中,衍化出了多种针对噬茵体感染的抗性机制。我们从宿主菌的抑制吸附、阻止噬菌体DNA注入、切断噬菌体DNA和影响其功能及流产感染等方面,对宿主菌抵抗噬菌体感染的机制进行了综述。     

弗氏柠檬酸细菌噬菌体的生物学特性

从属内溶菌谱分属于3个群的弗氏柠檬酸细菌噬菌体中,选出13株制成免疫血清,经血清中和试验,可将5l株噬菌体分为6个血清群,11个血清型。以电镜观察形态为基础,结合一级生长试验,噬菌斑形态观察,对温度、pH和柠檬酸钠试验,将13株噬菌体分为3类：第一类2株。具有等轴六角形头部和易弯曲的长尾,尾部无收缩性,属于长尾病毒科。血清学属于A群和B群,群间有低度相关。属内溶菌谱属于I类。 第二类4株。具有长六角形的头部和复杂尾,属于肌病毒科。血清学同属c群。属内溶菌谱分属于和I类。第三类7株。具有六角形头部和复杂尾,可能也属于肌病毒科。血清学分属于D、E、E群,群间有低度相关。属内溶菌谱属于币ll和币I“类。     

细菌毒素-抗毒素系统在噬菌体流产感染中的作用北大核心CSCD

细菌常受到数量众多的噬菌体感染,宿主细菌在和噬菌体竞赛中进化出多样化的分子策略,流产感染(abortive infection,Abi)是其中之一。毒素-抗毒素系统(toxin-antitoxin system,TA)会在细菌受到压力胁迫时表达并介导细菌的低代谢甚至休眠,还能直接减少子代噬菌体形成。此外,部分毒素序列和结构与Cas蛋白高度同源,噬菌体甚至会编码抗毒素类似物来阻遏对应毒素的活性。这表明流产感染中细菌死亡过程导致的噬菌体感染失败与TA功能高度重合,TA可能是噬菌体侵染宿主的主要阻力和防御力量之一。文中基于TA系统的分类和功能,对参与噬菌体流产感染的TA系统进行了综述,并预测具有流产功能的TA系统和其在抗生素开发和疾病治疗中的应用前景。这有助于认识细菌-噬菌体相互作用,并指导噬菌体治疗和合成生物学。     

细菌群体感应系统与噬菌体的相互作用机制研究进展

细菌在与噬菌体的长期共进化过程中形成多种抵抗噬菌体侵染的机制,其中群体感应参与的细菌抵御噬菌体侵染机制成为近年来的研究热点。群体感应与噬菌体之间的相互作用是复杂和多样的,本文将重点综述群体感应在噬菌体侵染中的作用、调控在噬菌体裂解-溶源转变的作用,以及群体感应与噬菌体的其他相互影响等内容,为噬菌体在细菌性疾病的治疗提供理论依据。     

关于噬菌体侵染细菌实验的教学策略探析

证明DNA是遗传物质的实验有两个,这两个实验都是高中阶段生物课程教学中非常重要的实验,一个是肺炎双球菌的转化实验,另外一个就是噬菌体侵染细菌实验,其中噬菌体侵染细菌实验探讨的难度相对较大。通过本文,笔者将结合自身教学经验,对该实验的教学策略进行探讨。     

噬菌体酶类降解细菌生物膜的研究进展

细菌生物膜(bacterial biofilm,BF)是细菌产生耐药性的重要原因之一,给抗生素治疗细菌感染带来极大困难.生物膜主要由细菌菌体和胞外聚合物质(extracellular polymeric substance,EPS)构成,其中EPS成分复杂,主要包括多糖(polysaccharides)、蛋白质、核酸和...     

Bacteriophage and bacteriophage resistance in lactic acid bacteria

Abstract: The study of bacteriophage-host interactions has been instrumental in the development of genetic systems in many genera, and laid many of the foundations of modern molecular genetics. Research into bacteriophage and bacteriophage resistance in the lactic acid bacteria has moved into a new and exciting dimension in recent years. Mechanisms such as adsorption inhibition, restriction and modification, and abortive infection which have been detected and described phenotypically over the past decade are now being subjected to molecular analysis, and this has led to a better understanding of the nature and variety of resistance systems employed by lactic acid bacteria to combat phage attack. In addition, analysis of different bacteriophage has increased our knowledge of these ubiquitous particles to the point where it is possible to construct novel phage resistances based on the phage genome itself. This review outlines the recent progress in the molecular analysis of bacteriophage, bacteriophage resistance and counter resistance, and the construction of novel resistance mechanisms.     

Copper resistance mechanisms in bacteria and fungi

Abstract: Copper is both an essential micronutrient and a toxic heavy metal for most living cells. The presence of high concentrations of cupric ions in the environment promotes the selection of microorganisms possessing genetic determinants for copper resistance. Several examples of chromosomal and plasmid copper-resistance systems in bacteria have been reported, and the mechanisms of resistance have started to be understood at the molecular level. Bacterial mechanisms of copper resistance are related to reduced copper transport, enhanced effiux of cupric ions, or copper complexation by cell components. Copper tolerance in fungi has also been ascribed to diverse mechanisms involving trapping of the metal by cell-wall components, altered uptake of copper, extracellular chelation or precipitation by secreted metabolites, and intracellular complexing by metallothioneins and phytochelatins; only the metallothionein chelation mechanism has been approached with molecular detail.     

主要医院感染病原菌的变迁及其耐药性分析

目的 分析永康市第一人民医院主要医院感染病原体和耐药性变迁,指导临床合理使用抗菌药物,防治医院感染。方法 用全国医院感染监测网软件,统计2000年1月～2003年12月医院感染主要病原体及其药敏结果,χ^2检验分析。结果 该院主要医院感染病原体依次是鲍曼不动杆菌、大肠埃希菌、金黄色葡萄球菌、肺炎克雷伯菌、铜绿假单胞菌、类白喉棒状杆菌、表皮葡萄球菌和阴沟肠杆菌。耐药率呈逐年增高趋势,但不同的细菌耐药率各具特点。革兰阳性（G^＋）菌对万古霉素的耐药率均为0,对利福平的耐药率均较低（0％～13．6％）,类白喉棒状杆菌对米诺四环素、妥布霉索和头孢哌酮的耐药率也较低。革兰阴性（G^-）菌对亚胺培南的耐药率均低（0％～36．8％）,鲍曼不动杆菌和阴沟肠杆菌具有多重高耐药性,铜绿假单胞菌对头孢吡肟、氨基糖苷类和环丙沙星的耐药率尚在较低水平（0％～36．4％）,大肠埃希菌和肺炎克雷伯菌的耐药性相似,对哌拉西林-他唑巴坦、头孢西丁的耐药率较低（0％～38．6％）。结论 细菌的耐药性与抗菌药物的使用及细菌自身复杂的耐药特性有关,及时送检感染部位标本,根据细菌药敏,合理使用抗菌药物控制感染,对降低细菌耐药率有现实意义。     

Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages

Background

Paenibacillus larvae is a Firmicute bacterium that causes American Foulbrood, a lethal disease in honeybees and is a major source of global agricultural losses. Although P. larvae phages were isolated prior to 2013, no full genome sequences of P. larvae bacteriophages were published or analyzed. This report includes an in-depth analysis of the structure, genomes, and relatedness of P. larvae myoviruses Abouo, Davis, Emery, Jimmer1, Jimmer2, and siphovirus phiIBB_Pl23 to each other and to other known phages.

Results

P. larvae phages Abouo, Davies, Emery, Jimmer1, and Jimmer2 are myoviruses with ~50 kbp genomes. The six P. larvae phages form three distinct groups by dotplot analysis. An annotated linear genome map of these six phages displays important identifiable genes and demonstrates the relationship between phages. Sixty phage assembly or structural protein genes and 133 regulatory or other non-structural protein genes were identifiable among the six P. larvae phages. Jimmer1, Jimmer2, and Davies formed stable lysogens resistant to superinfection by genetically similar phages. The correlation between tape measure protein gene length and phage tail length allowed identification of co-isolated phages Emery and Abouo in electron micrographs. A Phamerator database was assembled with the P. larvae phage genomes and 107 genomes of Firmicute-infecting phages, including 71 Bacillus phages. Phamerator identified conserved domains in 1,501 of 6,181 phamilies (only 24.3%) encoded by genes in the database and revealed that P. larvae phage genomes shared at least one phamily with 72 of the 107 other phages. The phamily relationship of large terminase proteins was used to indicate putative DNA packaging strategies. Analyses from CoreGenes, Phamerator, and electron micrograph measurements indicated Jimmer1, Jimmer2, Abouo and Davies were related to phages phiC2, EJ-1, KC5a, and AQ113, which are small-genome myoviruses that infect Streptococcus, Lactobacillus, and Clostridium, respectively.

Conclusions

This paper represents the first comparison of phage genomes in the Paenibacillus genus and the first organization of P. larvae phages based on sequence and structure. This analysis provides an important contribution to the field of bacteriophage genomics by serving as a foundation on which to build an understanding of the natural predators of P. larvae.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-745) contains supplementary material, which is available to authorized users.     

噬菌体在食品安全中的应用和潜在风险

近年来,经食品传播的感染性疾病时有发生,有的国家甚至有增多趋势。噬菌体在早期被用来治疗细菌性疾病,现在人们已经意识到噬菌体在食品工业上的应用前景也非常广阔。已经有人提出把它作为食品添加剂使用以杀灭食源性致病菌。而噬菌体本身的特性也确实说明,噬菌体是保障食品安全的理想工具。因为噬菌体不仅安全可靠,而且有严格的宿主特异性,在杀灭食源性致病菌的同时不会杀死生产中的发酵菌株。噬菌体可以用在食品生产中的各个环节以杀灭或抑制病原菌,比如原料采集、生产、储藏等环节。探讨噬菌体杀灭食源性致病菌的应用前景和潜在风险。     

Immobilization of bacteriophages on gold surfaces for the specific capture of pathogens

Techniques for the chemical attachment of wild-type bacteriophages onto gold surfaces and the subsequent capture of their host bacteria have been developed. The surfaces were modified with sugars (dextrose and sucrose) as well as amino acids (histidine and cysteine) to facilitate such attachment. Non-specific attachment was prevented by using bovine serum albumin as blocking layer. Surfaces modified with cysteine (and cysteamine) followed by activation using 2% gluteraldehyde resulted in an attachment density of 18 ± 0.15 phages/μm². This represented a 37-fold improvement compared to simply applying physisorption. Subsequently, the phage immobilized surfaces were exposed to the host E. coli EC12 bacteria and capture was confirmed by fluorescence microscopy. We obtained a bacterial capture density of 11.9 ± 0.2/100 μm², a 9-fold improvement when compared to those on physically adsorbed phages. The specificity of recognition was confirmed by exposing similar surfaces to three strains of non-host bacteria. These negative control experiments do not show any bacterial capture. In addition, no capture of the host was observed in the absence of the phages.     

The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity

Background

A rapid worldwide increase in the number of human infections caused by the extremely antibiotic resistant bacterium Stenotrophomonas maltophilia is prompting alarm. One potential treatment solution to the current antibiotic resistance dilemma is “phage therapy”, the clinical application of bacteriophages to selectively kill bacteria.

Results

Towards that end, phages DLP1 and DLP2 (vB_SmaS-DLP_1 and vB_SmaS-DLP_2, respectively) were isolated against S. maltophilia strain D1585. Host range analysis for each phage was conducted using 27 clinical S. maltophilia isolates and 11 Pseudomonas aeruginosa strains. Both phages exhibit unusually broad host ranges capable of infecting bacteria across taxonomic orders. Transmission electron microscopy of the phage DLP1 and DLP2 morphology reveals that they belong to the Siphoviridae family of bacteriophages. Restriction fragment length polymorphism analysis and complete genome sequencing and analysis indicates that phages DLP1 and DLP2 are closely related but different phages, sharing 96.7 % identity over 97.2 % of their genomes. These two phages are also related to P. aeruginosa phages vB_Pae-Kakheti_25 (PA25), PA73, and vB_PaeS_SCH_Ab26 (Ab26) and more distantly related to Burkholderia cepacia complex phage KL1, which together make up a taxonomic sub-family. Phages DLP1 and DLP2 exhibited significant differences in host ranges and growth kinetics.

Conclusions

The isolation and characterization of phages able to infect two completely different species of bacteria is an exciting discovery, as phages typically can only infect related bacterial species, and rarely infect bacteria across taxonomic families, let alone across taxonomic orders.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1848-y) contains supplementary material, which is available to authorized users.     

Cardiolipin and the osmotic stress responses of bacteria

Cells control their own hydration by accumulating solutes when they are exposed to high osmolality media and releasing solutes in response to osmotic down-shocks. Osmosensory transporters mediate solute accumulation and mechanosensitive channels mediate solute release. Escherichia coli serves as a paradigm for studies of cellular osmoregulation. Growth in media of high salinity alters the phospholipid headgroup and fatty acid compositions of bacterial cytoplasmic membranes, in many cases increasing the ratio of anionic to zwitterionic lipid. In E. coli, the proportion of cardiolipin (CL) increases as the proportion of phosphatidylethanolamine (PE) decreases when osmotic stress is imposed with an electrolyte or a non-electrolyte. Osmotic induction of the gene encoding CL synthase (cls) contributes to these changes. The proportion of phosphatidylglycerol (PG) increases at the expense of PE in cls⁻ bacteria and, in Bacillus subtilis, the genes encoding CL and PG synthases (clsA and pgsA) are both osmotically regulated. CL is concentrated at the poles of diverse bacterial cells. A FlAsH-tagged variant of osmosensory transporter ProP is also concentrated at E. coli cell poles. Polar concentration of ProP is CL-dependent whereas polar concentration of its paralogue LacY, a H⁺-lactose symporter, is not. The proportion of anionic lipids (CL and PG) modulates the function of ProP in vivo and in vitro. These effects suggest that the osmotic induction of CL synthesis and co-localization of ProP with CL at the cell poles adjust the osmolality range over which ProP activity is controlled by placing it in a CL-rich membrane environment. In contrast, a GFP-tagged variant of mechanosensitive channel MscL is not concentrated at the cell poles but anionic lipids bind to a specific site on each subunit of MscL and influence its function in vitro. The sub-cellular locations and lipid dependencies of other osmosensory systems are not known. Varying CL content is a key element of osmotic adaptation by bacteria but much remains to be learned about its roles in the localization and function of osmoregulatory proteins.     

1052株烧伤创面病原菌及其药敏分析

目的为了指导临床合理应用抗生素,提高治愈。方法所有标本均采用常规细菌培养,纸片扩散法对1052株病原菌行耐药性监测。结果360例患者送检标本1136份,检出1052株病原菌,其中G^-杆菌611株,占总检出率的58．08％,G^-球菌416株（39．54％）,MRSA253株,占金黄色葡萄球菌的60．82％,真菌25株（2．38％）。结论烧伤感染常见为铜绿假单胞菌,不动杆菌,变形杆菌,金黄色葡萄球菌和MRSA,且耐药性强。